Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4611.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4609.1 and Xcc-8004.4610.1 are separated by 204 nucleotidesXcc-8004.4610.1 and Xcc-8004.4611.1 overlap by 4 nucleotidesXcc-8004.4611.1 and Xcc-8004.4612.1 overlap by 4 nucleotides Xcc-8004.4609.1: Xcc-8004.4609.1 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 4,395,333 to 4,396,139 Xcc-8004.4609.1 Xcc-8004.4610.1: Xcc-8004.4610.1 - hypothetical protein, at 4,396,344 to 4,397,021 Xcc-8004.4610.1 Xcc-8004.4611.1: Xcc-8004.4611.1 - Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70), at 4,397,018 to 4,397,731 Xcc-8004.4611.1 Xcc-8004.4612.1: Xcc-8004.4612.1 - Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52), at 4,397,728 to 4,398,804 Xcc-8004.4612.1 Position (kb) 4397 4398Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 4396.048 kb on + strand, within Xcc-8004.4609.1at 4396.048 kb on + strand, within Xcc-8004.4609.1at 4396.048 kb on + strand, within Xcc-8004.4609.1at 4396.048 kb on + strand, within Xcc-8004.4609.1at 4396.049 kb on - strand, within Xcc-8004.4609.1at 4396.049 kb on - strand, within Xcc-8004.4609.1at 4396.049 kb on - strand, within Xcc-8004.4609.1at 4396.049 kb on - strand, within Xcc-8004.4609.1at 4396.049 kb on - strand, within Xcc-8004.4609.1at 4396.050 kb on + strand, within Xcc-8004.4609.1at 4396.050 kb on + strand, within Xcc-8004.4609.1at 4396.050 kb on + strand, within Xcc-8004.4609.1at 4396.051 kb on - strand, within Xcc-8004.4609.1at 4396.051 kb on - strand, within Xcc-8004.4609.1at 4396.051 kb on - strand, within Xcc-8004.4609.1at 4396.051 kb on - strand, within Xcc-8004.4609.1at 4396.131 kb on + strandat 4396.131 kb on + strandat 4396.131 kb on + strandat 4396.131 kb on + strandat 4396.131 kb on + strandat 4396.131 kb on + strandat 4396.131 kb on + strandat 4396.131 kb on + strandat 4396.132 kb on - strandat 4396.132 kb on - strandat 4396.132 kb on - strandat 4396.132 kb on - strandat 4396.132 kb on - strandat 4396.170 kb on + strandat 4396.170 kb on + strandat 4396.171 kb on - strandat 4396.171 kb on - strandat 4396.171 kb on - strandat 4396.171 kb on - strandat 4396.217 kb on + strandat 4396.218 kb on - strandat 4396.249 kb on + strandat 4396.249 kb on + strandat 4396.249 kb on + strandat 4396.249 kb on + strandat 4396.249 kb on + strandat 4396.249 kb on + strandat 4396.249 kb on + strandat 4396.250 kb on - strandat 4396.250 kb on - strandat 4396.250 kb on - strandat 4396.250 kb on - strandat 4396.250 kb on - strandat 4396.250 kb on - strandat 4396.250 kb on - strandat 4396.250 kb on - strandat 4396.264 kb on + strandat 4396.264 kb on + strandat 4396.264 kb on + strandat 4396.264 kb on + strandat 4396.265 kb on - strandat 4396.265 kb on - strandat 4396.288 kb on + strandat 4396.288 kb on + strandat 4396.288 kb on + strandat 4396.288 kb on + strandat 4396.288 kb on + strandat 4396.289 kb on - strandat 4396.289 kb on - strandat 4396.289 kb on - strandat 4396.337 kb on + strandat 4396.558 kb on + strand, within Xcc-8004.4610.1at 4396.558 kb on + strand, within Xcc-8004.4610.1at 4396.558 kb on + strand, within Xcc-8004.4610.1at 4396.558 kb on + strand, within Xcc-8004.4610.1at 4396.559 kb on - strand, within Xcc-8004.4610.1at 4396.559 kb on - strand, within Xcc-8004.4610.1at 4396.559 kb on - strand, within Xcc-8004.4610.1at 4396.559 kb on - strand, within Xcc-8004.4610.1at 4396.559 kb on - strand, within Xcc-8004.4610.1at 4396.559 kb on - strand, within Xcc-8004.4610.1at 4396.559 kb on - strand, within Xcc-8004.4610.1at 4396.559 kb on - strand, within Xcc-8004.4610.1at 4396.559 kb on - strand, within Xcc-8004.4610.1at 4396.771 kb on + strand, within Xcc-8004.4610.1at 4396.772 kb on - strand, within Xcc-8004.4610.1at 4396.934 kb on + strand, within Xcc-8004.4610.1at 4397.171 kb on + strand, within Xcc-8004.4611.1at 4397.171 kb on + strand, within Xcc-8004.4611.1at 4397.171 kb on + strand, within Xcc-8004.4611.1at 4397.171 kb on + strand, within Xcc-8004.4611.1at 4397.172 kb on - strand, within Xcc-8004.4611.1at 4397.182 kb on - strand, within Xcc-8004.4611.1at 4397.337 kb on + strand, within Xcc-8004.4611.1at 4397.337 kb on + strand, within Xcc-8004.4611.1at 4397.337 kb on + strand, within Xcc-8004.4611.1at 4397.337 kb on + strand, within Xcc-8004.4611.1at 4397.338 kb on - strand, within Xcc-8004.4611.1at 4397.490 kb on + strand, within Xcc-8004.4611.1at 4397.490 kb on + strand, within Xcc-8004.4611.1at 4397.490 kb on + strand, within Xcc-8004.4611.1at 4397.490 kb on + strand, within Xcc-8004.4611.1at 4397.490 kb on + strand, within Xcc-8004.4611.1at 4397.490 kb on + strand, within Xcc-8004.4611.1at 4397.490 kb on + strand, within Xcc-8004.4611.1at 4397.491 kb on - strand, within Xcc-8004.4611.1at 4397.491 kb on - strand, within Xcc-8004.4611.1at 4397.491 kb on - strand, within Xcc-8004.4611.1at 4397.491 kb on - strand, within Xcc-8004.4611.1at 4397.491 kb on - strand, within Xcc-8004.4611.1at 4397.491 kb on - strand, within Xcc-8004.4611.1at 4397.491 kb on - strand, within Xcc-8004.4611.1at 4397.491 kb on - strand, within Xcc-8004.4611.1at 4397.491 kb on - strand, within Xcc-8004.4611.1at 4397.526 kb on + strand, within Xcc-8004.4611.1at 4397.526 kb on + strand, within Xcc-8004.4611.1at 4397.527 kb on - strand, within Xcc-8004.4611.1at 4397.625 kb on + strand, within Xcc-8004.4611.1at 4397.625 kb on + strand, within Xcc-8004.4611.1at 4397.626 kb on - strand, within Xcc-8004.4611.1at 4397.626 kb on - strand, within Xcc-8004.4611.1at 4397.626 kb on - strand, within Xcc-8004.4611.1at 4397.626 kb on - strand, within Xcc-8004.4611.1at 4397.626 kb on - strand, within Xcc-8004.4611.1at 4397.697 kb on + strandat 4397.840 kb on + strand, within Xcc-8004.4612.1at 4397.984 kb on + strand, within Xcc-8004.4612.1at 4397.984 kb on + strand, within Xcc-8004.4612.1at 4398.023 kb on + strand, within Xcc-8004.4612.1at 4398.023 kb on + strand, within Xcc-8004.4612.1at 4398.023 kb on + strand, within Xcc-8004.4612.1at 4398.023 kb on + strand, within Xcc-8004.4612.1at 4398.023 kb on + strand, within Xcc-8004.4612.1at 4398.024 kb on - strand, within Xcc-8004.4612.1at 4398.024 kb on - strand, within Xcc-8004.4612.1at 4398.098 kb on + strand, within Xcc-8004.4612.1at 4398.098 kb on + strand, within Xcc-8004.4612.1at 4398.098 kb on + strand, within Xcc-8004.4612.1at 4398.098 kb on + strand, within Xcc-8004.4612.1at 4398.098 kb on + strand, within Xcc-8004.4612.1at 4398.098 kb on + strand, within Xcc-8004.4612.1at 4398.099 kb on - strand, within Xcc-8004.4612.1at 4398.099 kb on - strand, within Xcc-8004.4612.1at 4398.152 kb on + strand, within Xcc-8004.4612.1at 4398.152 kb on + strand, within Xcc-8004.4612.1at 4398.153 kb on - strand, within Xcc-8004.4612.1at 4398.153 kb on - strand, within Xcc-8004.4612.1at 4398.340 kb on - strand, within Xcc-8004.4612.1at 4398.365 kb on + strand, within Xcc-8004.4612.1at 4398.366 kb on - strand, within Xcc-8004.4612.1at 4398.366 kb on - strand, within Xcc-8004.4612.1at 4398.366 kb on - strand, within Xcc-8004.4612.1at 4398.366 kb on - strand, within Xcc-8004.4612.1at 4398.563 kb on + strand, within Xcc-8004.4612.1at 4398.564 kb on - strand, within Xcc-8004.4612.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes)
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4,396,048 + Xcc-8004.4609.1 0.89 +1.8
4,396,048 + Xcc-8004.4609.1 0.89 -3.4
4,396,048 + Xcc-8004.4609.1 0.89 -0.5
4,396,048 + Xcc-8004.4609.1 0.89 -0.4
4,396,049 - Xcc-8004.4609.1 0.89 +0.3
4,396,049 - Xcc-8004.4609.1 0.89 -0.6
4,396,049 - Xcc-8004.4609.1 0.89 +0.4
4,396,049 - Xcc-8004.4609.1 0.89 +1.5
4,396,049 - Xcc-8004.4609.1 0.89 -1.9
4,396,050 + Xcc-8004.4609.1 0.89 -0.7
4,396,050 + Xcc-8004.4609.1 0.89 -0.1
4,396,050 + Xcc-8004.4609.1 0.89 +1.4
4,396,051 - Xcc-8004.4609.1 0.89 +1.5
4,396,051 - Xcc-8004.4609.1 0.89 +2.2
4,396,051 - Xcc-8004.4609.1 0.89 +0.1
4,396,051 - Xcc-8004.4609.1 0.89 +0.0
4,396,131 + +3.2
4,396,131 + -0.9
4,396,131 + +0.8
4,396,131 + -1.9
4,396,131 + -0.2
4,396,131 + +0.7
4,396,131 + +0.4
4,396,131 + -1.8
4,396,132 - -1.0
4,396,132 - -2.3
4,396,132 - -3.1
4,396,132 - +0.0
4,396,132 - -0.1
4,396,170 + -0.8
4,396,170 + +0.4
4,396,171 - +1.7
4,396,171 - +0.7
4,396,171 - -1.8
4,396,171 - -0.7
4,396,217 + -1.7
4,396,218 - +1.3
4,396,249 + +0.1
4,396,249 + -0.9
4,396,249 + -1.3
4,396,249 + +2.4
4,396,249 + +0.9
4,396,249 + -0.4
4,396,249 + -0.2
4,396,250 - -0.9
4,396,250 - -0.5
4,396,250 - -0.6
4,396,250 - +1.5
4,396,250 - -2.9
4,396,250 - -1.5
4,396,250 - +0.1
4,396,250 - +1.1
4,396,264 + +0.6
4,396,264 + -4.0
4,396,264 + -1.8
4,396,264 + +0.7
4,396,265 - -3.7
4,396,265 - -1.9
4,396,288 + +0.1
4,396,288 + +0.4
4,396,288 + +0.3
4,396,288 + -1.5
4,396,288 + -2.7
4,396,289 - +0.2
4,396,289 - -3.5
4,396,289 - -2.1
4,396,337 + +0.9
4,396,558 + Xcc-8004.4610.1 0.32 -1.4
4,396,558 + Xcc-8004.4610.1 0.32 -0.8
4,396,558 + Xcc-8004.4610.1 0.32 +1.8
4,396,558 + Xcc-8004.4610.1 0.32 +0.0
4,396,559 - Xcc-8004.4610.1 0.32 +0.3
4,396,559 - Xcc-8004.4610.1 0.32 -1.1
4,396,559 - Xcc-8004.4610.1 0.32 +1.0
4,396,559 - Xcc-8004.4610.1 0.32 +0.2
4,396,559 - Xcc-8004.4610.1 0.32 +0.8
4,396,559 - Xcc-8004.4610.1 0.32 +0.1
4,396,559 - Xcc-8004.4610.1 0.32 -3.7
4,396,559 - Xcc-8004.4610.1 0.32 -2.0
4,396,559 - Xcc-8004.4610.1 0.32 +1.0
4,396,771 + Xcc-8004.4610.1 0.63 +0.7
4,396,772 - Xcc-8004.4610.1 0.63 -1.5
4,396,934 + Xcc-8004.4610.1 0.87 -1.8
4,397,171 + Xcc-8004.4611.1 0.21 +0.1
4,397,171 + Xcc-8004.4611.1 0.21 -3.2
4,397,171 + Xcc-8004.4611.1 0.21 -1.0
4,397,171 + Xcc-8004.4611.1 0.21 -1.4
4,397,172 - Xcc-8004.4611.1 0.22 +0.6
4,397,182 - Xcc-8004.4611.1 0.23 -2.3
4,397,337 + Xcc-8004.4611.1 0.45 +0.7
4,397,337 + Xcc-8004.4611.1 0.45 +0.9
4,397,337 + Xcc-8004.4611.1 0.45 -1.2
4,397,337 + Xcc-8004.4611.1 0.45 +0.4
4,397,338 - Xcc-8004.4611.1 0.45 -0.9
4,397,490 + Xcc-8004.4611.1 0.66 +5.3
4,397,490 + Xcc-8004.4611.1 0.66 -1.9
4,397,490 + Xcc-8004.4611.1 0.66 +0.9
4,397,490 + Xcc-8004.4611.1 0.66 +0.5
4,397,490 + Xcc-8004.4611.1 0.66 -1.7
4,397,490 + Xcc-8004.4611.1 0.66 +0.1
4,397,490 + Xcc-8004.4611.1 0.66 -2.8
4,397,491 - Xcc-8004.4611.1 0.66 +2.7
4,397,491 - Xcc-8004.4611.1 0.66 -0.1
4,397,491 - Xcc-8004.4611.1 0.66 -0.1
4,397,491 - Xcc-8004.4611.1 0.66 +1.3
4,397,491 - Xcc-8004.4611.1 0.66 +0.4
4,397,491 - Xcc-8004.4611.1 0.66 -0.3
4,397,491 - Xcc-8004.4611.1 0.66 +0.8
4,397,491 - Xcc-8004.4611.1 0.66 +0.8
4,397,491 - Xcc-8004.4611.1 0.66 -1.9
4,397,526 + Xcc-8004.4611.1 0.71 -0.0
4,397,526 + Xcc-8004.4611.1 0.71 -0.2
4,397,527 - Xcc-8004.4611.1 0.71 -2.0
4,397,625 + Xcc-8004.4611.1 0.85 +0.5
4,397,625 + Xcc-8004.4611.1 0.85 -0.4
4,397,626 - Xcc-8004.4611.1 0.85 +0.2
4,397,626 - Xcc-8004.4611.1 0.85 +1.3
4,397,626 - Xcc-8004.4611.1 0.85 -0.7
4,397,626 - Xcc-8004.4611.1 0.85 +1.4
4,397,626 - Xcc-8004.4611.1 0.85 +0.3
4,397,697 + -0.8
4,397,840 + Xcc-8004.4612.1 0.10 -0.8
4,397,984 + Xcc-8004.4612.1 0.24 -0.5
4,397,984 + Xcc-8004.4612.1 0.24 -0.6
4,398,023 + Xcc-8004.4612.1 0.27 -1.4
4,398,023 + Xcc-8004.4612.1 0.27 -2.1
4,398,023 + Xcc-8004.4612.1 0.27 -0.3
4,398,023 + Xcc-8004.4612.1 0.27 +0.8
4,398,023 + Xcc-8004.4612.1 0.27 -0.4
4,398,024 - Xcc-8004.4612.1 0.27 +1.0
4,398,024 - Xcc-8004.4612.1 0.27 +0.3
4,398,098 + Xcc-8004.4612.1 0.34 -2.1
4,398,098 + Xcc-8004.4612.1 0.34 +1.8
4,398,098 + Xcc-8004.4612.1 0.34 -1.5
4,398,098 + Xcc-8004.4612.1 0.34 +1.6
4,398,098 + Xcc-8004.4612.1 0.34 -1.3
4,398,098 + Xcc-8004.4612.1 0.34 -2.2
4,398,099 - Xcc-8004.4612.1 0.34 +4.5
4,398,099 - Xcc-8004.4612.1 0.34 -0.3
4,398,152 + Xcc-8004.4612.1 0.39 -0.3
4,398,152 + Xcc-8004.4612.1 0.39 -0.1
4,398,153 - Xcc-8004.4612.1 0.39 +2.7
4,398,153 - Xcc-8004.4612.1 0.39 +0.4
4,398,340 - Xcc-8004.4612.1 0.57 +0.7
4,398,365 + Xcc-8004.4612.1 0.59 -0.1
4,398,366 - Xcc-8004.4612.1 0.59 +0.9
4,398,366 - Xcc-8004.4612.1 0.59 -0.2
4,398,366 - Xcc-8004.4612.1 0.59 +0.5
4,398,366 - Xcc-8004.4612.1 0.59 +1.8
4,398,563 + Xcc-8004.4612.1 0.78 +0.9
4,398,564 - Xcc-8004.4612.1 0.78 -1.3

Or see this region's nucleotide sequence