Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4551.1 and Xcc-8004.4553.1 are separated by 231 nucleotides Xcc-8004.4553.1 and Xcc-8004.4554.1 are separated by 292 nucleotides
Xcc-8004.4551.1: Xcc-8004.4551.1 - FIG01211963: hypothetical protein, at 4,346,645 to 4,347,799
Xcc-8004.4551.1
Xcc-8004.4553.1: Xcc-8004.4553.1 - FIG01211682: hypothetical protein, at 4,348,031 to 4,348,546
Xcc-8004.4553.1
Xcc-8004.4554.1: Xcc-8004.4554.1 - Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16), at 4,348,839 to 4,350,668
Xcc-8004.4554.1
Position (kb) 4348
4349 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4347.039 kb on + strand, within Xcc-8004.4551.1 at 4347.039 kb on + strand, within Xcc-8004.4551.1 at 4347.040 kb on - strand, within Xcc-8004.4551.1 at 4347.040 kb on - strand, within Xcc-8004.4551.1 at 4347.088 kb on + strand, within Xcc-8004.4551.1 at 4347.089 kb on - strand, within Xcc-8004.4551.1 at 4347.096 kb on - strand, within Xcc-8004.4551.1 at 4347.117 kb on + strand, within Xcc-8004.4551.1 at 4347.118 kb on - strand, within Xcc-8004.4551.1 at 4347.227 kb on + strand, within Xcc-8004.4551.1 at 4347.228 kb on - strand, within Xcc-8004.4551.1 at 4347.228 kb on - strand, within Xcc-8004.4551.1 at 4347.320 kb on - strand, within Xcc-8004.4551.1 at 4347.349 kb on + strand, within Xcc-8004.4551.1 at 4347.372 kb on + strand, within Xcc-8004.4551.1 at 4347.372 kb on + strand, within Xcc-8004.4551.1 at 4347.448 kb on + strand, within Xcc-8004.4551.1 at 4347.449 kb on - strand, within Xcc-8004.4551.1 at 4347.449 kb on - strand, within Xcc-8004.4551.1 at 4347.528 kb on + strand, within Xcc-8004.4551.1 at 4347.528 kb on + strand, within Xcc-8004.4551.1 at 4347.667 kb on - strand, within Xcc-8004.4551.1 at 4347.667 kb on - strand, within Xcc-8004.4551.1 at 4347.672 kb on + strand, within Xcc-8004.4551.1 at 4347.678 kb on + strand, within Xcc-8004.4551.1 at 4347.678 kb on + strand, within Xcc-8004.4551.1 at 4347.678 kb on + strand, within Xcc-8004.4551.1 at 4347.679 kb on - strand, within Xcc-8004.4551.1 at 4347.679 kb on - strand, within Xcc-8004.4551.1 at 4347.679 kb on - strand, within Xcc-8004.4551.1 at 4347.679 kb on - strand, within Xcc-8004.4551.1 at 4347.679 kb on - strand, within Xcc-8004.4551.1 at 4347.679 kb on - strand, within Xcc-8004.4551.1 at 4347.679 kb on - strand, within Xcc-8004.4551.1 at 4347.727 kb on - strand at 4347.949 kb on + strand at 4347.949 kb on + strand at 4347.949 kb on + strand at 4347.950 kb on - strand at 4347.950 kb on - strand at 4347.950 kb on - strand at 4348.114 kb on - strand, within Xcc-8004.4553.1 at 4348.203 kb on + strand, within Xcc-8004.4553.1 at 4348.203 kb on + strand, within Xcc-8004.4553.1 at 4348.204 kb on - strand, within Xcc-8004.4553.1 at 4348.204 kb on - strand, within Xcc-8004.4553.1 at 4348.398 kb on + strand, within Xcc-8004.4553.1 at 4348.546 kb on + strand at 4348.588 kb on - strand at 4348.612 kb on - strand at 4348.612 kb on - strand at 4348.612 kb on - strand at 4348.612 kb on - strand at 4348.692 kb on - strand at 4348.710 kb on - strand at 4348.710 kb on - strand at 4348.710 kb on - strand at 4348.720 kb on + strand at 4348.720 kb on + strand at 4348.781 kb on - strand at 4348.810 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes) remove 4,347,039 + Xcc-8004.4551.1 0.34 +0.2 4,347,039 + Xcc-8004.4551.1 0.34 +0.9 4,347,040 - Xcc-8004.4551.1 0.34 +2.0 4,347,040 - Xcc-8004.4551.1 0.34 +2.7 4,347,088 + Xcc-8004.4551.1 0.38 -1.8 4,347,089 - Xcc-8004.4551.1 0.38 +2.0 4,347,096 - Xcc-8004.4551.1 0.39 +0.8 4,347,117 + Xcc-8004.4551.1 0.41 +1.2 4,347,118 - Xcc-8004.4551.1 0.41 -0.9 4,347,227 + Xcc-8004.4551.1 0.50 -1.3 4,347,228 - Xcc-8004.4551.1 0.50 -4.1 4,347,228 - Xcc-8004.4551.1 0.50 -1.6 4,347,320 - Xcc-8004.4551.1 0.58 +1.4 4,347,349 + Xcc-8004.4551.1 0.61 +0.5 4,347,372 + Xcc-8004.4551.1 0.63 -0.0 4,347,372 + Xcc-8004.4551.1 0.63 +2.0 4,347,448 + Xcc-8004.4551.1 0.70 +0.7 4,347,449 - Xcc-8004.4551.1 0.70 -1.9 4,347,449 - Xcc-8004.4551.1 0.70 -1.4 4,347,528 + Xcc-8004.4551.1 0.76 +1.0 4,347,528 + Xcc-8004.4551.1 0.76 +1.4 4,347,667 - Xcc-8004.4551.1 0.88 +0.1 4,347,667 - Xcc-8004.4551.1 0.88 -1.3 4,347,672 + Xcc-8004.4551.1 0.89 +1.5 4,347,678 + Xcc-8004.4551.1 0.89 +0.5 4,347,678 + Xcc-8004.4551.1 0.89 +3.7 4,347,678 + Xcc-8004.4551.1 0.89 +1.5 4,347,679 - Xcc-8004.4551.1 0.90 -0.6 4,347,679 - Xcc-8004.4551.1 0.90 +0.7 4,347,679 - Xcc-8004.4551.1 0.90 -0.1 4,347,679 - Xcc-8004.4551.1 0.90 -0.9 4,347,679 - Xcc-8004.4551.1 0.90 -0.4 4,347,679 - Xcc-8004.4551.1 0.90 -0.6 4,347,679 - Xcc-8004.4551.1 0.90 -0.3 4,347,727 - -0.0 4,347,949 + +0.1 4,347,949 + -0.7 4,347,949 + +2.0 4,347,950 - -0.0 4,347,950 - +2.0 4,347,950 - -0.4 4,348,114 - Xcc-8004.4553.1 0.16 +2.1 4,348,203 + Xcc-8004.4553.1 0.33 +0.5 4,348,203 + Xcc-8004.4553.1 0.33 +0.7 4,348,204 - Xcc-8004.4553.1 0.34 -0.1 4,348,204 - Xcc-8004.4553.1 0.34 -1.0 4,348,398 + Xcc-8004.4553.1 0.71 -0.9 4,348,546 + -0.2 4,348,588 - -2.4 4,348,612 - -1.3 4,348,612 - +0.9 4,348,612 - -1.5 4,348,612 - -0.6 4,348,692 - +0.1 4,348,710 - -0.2 4,348,710 - -1.5 4,348,710 - -0.3 4,348,720 + -1.2 4,348,720 + +0.3 4,348,781 - +1.5 4,348,810 + +2.6
Or see this region's nucleotide sequence