Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4446.1 and Xcc-8004.4447.1 are separated by 114 nucleotides Xcc-8004.4447.1 and Xcc-8004.4448.1 are separated by 9 nucleotides
Xcc-8004.4446.1: Xcc-8004.4446.1 - Cytosol aminopeptidase PepA (EC 3.4.11.1), at 4,261,933 to 4,263,414
Xcc-8004.4446.1
Xcc-8004.4447.1: Xcc-8004.4447.1 - DNA polymerase III chi subunit (EC 2.7.7.7), at 4,263,529 to 4,263,954
Xcc-8004.4447.1
Xcc-8004.4448.1: Xcc-8004.4448.1 - FIG01211758: hypothetical protein, at 4,263,964 to 4,265,196
Xcc-8004.4448.1
Position (kb) 4263
4264 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4262.701 kb on + strand, within Xcc-8004.4446.1 at 4262.782 kb on + strand, within Xcc-8004.4446.1 at 4262.782 kb on + strand, within Xcc-8004.4446.1 at 4262.782 kb on + strand, within Xcc-8004.4446.1 at 4262.782 kb on + strand, within Xcc-8004.4446.1 at 4262.902 kb on + strand, within Xcc-8004.4446.1 at 4263.001 kb on + strand, within Xcc-8004.4446.1 at 4263.001 kb on + strand, within Xcc-8004.4446.1 at 4263.001 kb on + strand, within Xcc-8004.4446.1 at 4263.184 kb on + strand, within Xcc-8004.4446.1 at 4263.220 kb on + strand, within Xcc-8004.4446.1 at 4263.220 kb on + strand, within Xcc-8004.4446.1 at 4263.425 kb on + strand at 4263.952 kb on + strand at 4263.952 kb on + strand at 4263.952 kb on + strand at 4263.952 kb on + strand at 4263.952 kb on + strand at 4263.952 kb on + strand at 4263.952 kb on + strand at 4263.963 kb on + strand at 4263.963 kb on + strand at 4263.997 kb on + strand at 4263.997 kb on + strand at 4264.031 kb on + strand at 4264.032 kb on - strand at 4264.109 kb on + strand, within Xcc-8004.4448.1 at 4264.109 kb on + strand, within Xcc-8004.4448.1 at 4264.142 kb on + strand, within Xcc-8004.4448.1 at 4264.240 kb on + strand, within Xcc-8004.4448.1 at 4264.240 kb on + strand, within Xcc-8004.4448.1 at 4264.240 kb on + strand, within Xcc-8004.4448.1 at 4264.276 kb on + strand, within Xcc-8004.4448.1 at 4264.276 kb on + strand, within Xcc-8004.4448.1 at 4264.410 kb on - strand, within Xcc-8004.4448.1 at 4264.579 kb on + strand, within Xcc-8004.4448.1 at 4264.607 kb on + strand, within Xcc-8004.4448.1 at 4264.672 kb on + strand, within Xcc-8004.4448.1 at 4264.672 kb on + strand, within Xcc-8004.4448.1 at 4264.672 kb on + strand, within Xcc-8004.4448.1 at 4264.672 kb on + strand, within Xcc-8004.4448.1 at 4264.672 kb on + strand, within Xcc-8004.4448.1 at 4264.672 kb on + strand, within Xcc-8004.4448.1 at 4264.673 kb on - strand, within Xcc-8004.4448.1 at 4264.822 kb on + strand, within Xcc-8004.4448.1 at 4264.823 kb on - strand, within Xcc-8004.4448.1 at 4264.823 kb on - strand, within Xcc-8004.4448.1 at 4264.823 kb on - strand, within Xcc-8004.4448.1 at 4264.823 kb on - strand, within Xcc-8004.4448.1 at 4264.823 kb on - strand, within Xcc-8004.4448.1 at 4264.823 kb on - strand, within Xcc-8004.4448.1 at 4264.823 kb on - strand, within Xcc-8004.4448.1 at 4264.856 kb on + strand, within Xcc-8004.4448.1 at 4264.857 kb on - strand, within Xcc-8004.4448.1 at 4264.864 kb on + strand, within Xcc-8004.4448.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes) remove 4,262,701 + Xcc-8004.4446.1 0.52 -0.3 4,262,782 + Xcc-8004.4446.1 0.57 -0.7 4,262,782 + Xcc-8004.4446.1 0.57 +0.3 4,262,782 + Xcc-8004.4446.1 0.57 -2.2 4,262,782 + Xcc-8004.4446.1 0.57 -1.2 4,262,902 + Xcc-8004.4446.1 0.65 +1.8 4,263,001 + Xcc-8004.4446.1 0.72 -1.3 4,263,001 + Xcc-8004.4446.1 0.72 -1.1 4,263,001 + Xcc-8004.4446.1 0.72 -1.8 4,263,184 + Xcc-8004.4446.1 0.84 -3.6 4,263,220 + Xcc-8004.4446.1 0.87 -2.7 4,263,220 + Xcc-8004.4446.1 0.87 -0.5 4,263,425 + -1.9 4,263,952 + +0.7 4,263,952 + -0.6 4,263,952 + +0.4 4,263,952 + -2.4 4,263,952 + +1.0 4,263,952 + +1.5 4,263,952 + +0.1 4,263,963 + -0.1 4,263,963 + -0.2 4,263,997 + -1.6 4,263,997 + -0.9 4,264,031 + -0.7 4,264,032 - -0.9 4,264,109 + Xcc-8004.4448.1 0.12 -2.5 4,264,109 + Xcc-8004.4448.1 0.12 +1.3 4,264,142 + Xcc-8004.4448.1 0.14 -2.5 4,264,240 + Xcc-8004.4448.1 0.22 +2.7 4,264,240 + Xcc-8004.4448.1 0.22 +1.7 4,264,240 + Xcc-8004.4448.1 0.22 +0.5 4,264,276 + Xcc-8004.4448.1 0.25 -0.4 4,264,276 + Xcc-8004.4448.1 0.25 +0.7 4,264,410 - Xcc-8004.4448.1 0.36 -0.7 4,264,579 + Xcc-8004.4448.1 0.50 -2.7 4,264,607 + Xcc-8004.4448.1 0.52 -3.2 4,264,672 + Xcc-8004.4448.1 0.57 +0.3 4,264,672 + Xcc-8004.4448.1 0.57 +1.7 4,264,672 + Xcc-8004.4448.1 0.57 -1.1 4,264,672 + Xcc-8004.4448.1 0.57 +3.5 4,264,672 + Xcc-8004.4448.1 0.57 +0.9 4,264,672 + Xcc-8004.4448.1 0.57 +1.2 4,264,673 - Xcc-8004.4448.1 0.58 +0.3 4,264,822 + Xcc-8004.4448.1 0.70 -1.4 4,264,823 - Xcc-8004.4448.1 0.70 -0.7 4,264,823 - Xcc-8004.4448.1 0.70 +1.0 4,264,823 - Xcc-8004.4448.1 0.70 -2.7 4,264,823 - Xcc-8004.4448.1 0.70 +0.4 4,264,823 - Xcc-8004.4448.1 0.70 +2.2 4,264,823 - Xcc-8004.4448.1 0.70 +1.5 4,264,823 - Xcc-8004.4448.1 0.70 +0.7 4,264,856 + Xcc-8004.4448.1 0.72 -1.8 4,264,857 - Xcc-8004.4448.1 0.72 +0.7 4,264,864 + Xcc-8004.4448.1 0.73 +0.1
Or see this region's nucleotide sequence