Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4410.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4409.1 and Xcc-8004.4410.1 overlap by 19 nucleotidesXcc-8004.4410.1 and Xcc-8004.4411.1 overlap by 53 nucleotides Xcc-8004.4409.1: Xcc-8004.4409.1 - FIG01211368: hypothetical protein, at 4,217,323 to 4,218,291 Xcc-8004.4409.1 Xcc-8004.4410.1: Xcc-8004.4410.1 - FIG01212107: hypothetical protein, at 4,218,273 to 4,219,616 Xcc-8004.4410.1 Xcc-8004.4411.1: Xcc-8004.4411.1 - FIG01211880: hypothetical protein, at 4,219,564 to 4,221,471 Xcc-8004.4411.1 Position (kb) 4218 4219 4220Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4217.311 kb on + strandat 4217.311 kb on + strandat 4217.315 kb on - strandat 4217.315 kb on - strandat 4217.315 kb on - strandat 4217.315 kb on - strandat 4217.324 kb on + strandat 4217.405 kb on + strandat 4217.405 kb on + strandat 4217.405 kb on + strandat 4217.406 kb on - strandat 4217.491 kb on - strand, within Xcc-8004.4409.1at 4217.750 kb on + strand, within Xcc-8004.4409.1at 4217.750 kb on + strand, within Xcc-8004.4409.1at 4217.751 kb on - strand, within Xcc-8004.4409.1at 4217.751 kb on - strand, within Xcc-8004.4409.1at 4217.751 kb on - strand, within Xcc-8004.4409.1at 4217.751 kb on - strand, within Xcc-8004.4409.1at 4217.751 kb on - strand, within Xcc-8004.4409.1at 4217.751 kb on - strand, within Xcc-8004.4409.1at 4217.769 kb on - strand, within Xcc-8004.4409.1at 4217.769 kb on - strand, within Xcc-8004.4409.1at 4217.904 kb on - strand, within Xcc-8004.4409.1at 4218.263 kb on - strandat 4218.943 kb on + strand, within Xcc-8004.4410.1at 4218.943 kb on + strand, within Xcc-8004.4410.1at 4218.943 kb on + strand, within Xcc-8004.4410.1at 4218.944 kb on - strand, within Xcc-8004.4410.1at 4218.944 kb on - strand, within Xcc-8004.4410.1at 4218.944 kb on - strand, within Xcc-8004.4410.1at 4218.979 kb on + strand, within Xcc-8004.4410.1at 4218.979 kb on + strand, within Xcc-8004.4410.1at 4218.979 kb on + strand, within Xcc-8004.4410.1at 4218.979 kb on + strand, within Xcc-8004.4410.1at 4218.980 kb on - strand, within Xcc-8004.4410.1at 4218.980 kb on - strand, within Xcc-8004.4410.1at 4218.980 kb on - strand, within Xcc-8004.4410.1at 4218.991 kb on + strand, within Xcc-8004.4410.1at 4218.991 kb on + strand, within Xcc-8004.4410.1at 4218.991 kb on + strand, within Xcc-8004.4410.1at 4218.991 kb on + strand, within Xcc-8004.4410.1at 4218.992 kb on - strand, within Xcc-8004.4410.1at 4218.992 kb on - strand, within Xcc-8004.4410.1at 4219.118 kb on + strand, within Xcc-8004.4410.1at 4219.119 kb on - strand, within Xcc-8004.4410.1at 4219.119 kb on - strand, within Xcc-8004.4410.1at 4219.119 kb on - strand, within Xcc-8004.4410.1at 4219.126 kb on + strand, within Xcc-8004.4410.1at 4219.126 kb on + strand, within Xcc-8004.4410.1at 4219.126 kb on + strand, within Xcc-8004.4410.1at 4219.127 kb on - strand, within Xcc-8004.4410.1at 4219.127 kb on - strand, within Xcc-8004.4410.1at 4219.127 kb on - strand, within Xcc-8004.4410.1at 4219.127 kb on - strand, within Xcc-8004.4410.1at 4219.180 kb on + strand, within Xcc-8004.4410.1at 4219.181 kb on - strand, within Xcc-8004.4410.1at 4219.311 kb on + strand, within Xcc-8004.4410.1at 4219.311 kb on + strand, within Xcc-8004.4410.1at 4219.311 kb on + strand, within Xcc-8004.4410.1at 4219.312 kb on - strand, within Xcc-8004.4410.1at 4219.312 kb on - strand, within Xcc-8004.4410.1at 4219.312 kb on - strand, within Xcc-8004.4410.1at 4219.312 kb on - strand, within Xcc-8004.4410.1at 4219.312 kb on - strand, within Xcc-8004.4410.1at 4219.635 kb on - strandat 4219.670 kb on + strandat 4219.671 kb on - strandat 4219.697 kb on + strandat 4219.697 kb on + strandat 4219.697 kb on + strandat 4219.718 kb on + strandat 4219.736 kb on + strandat 4219.769 kb on + strand, within Xcc-8004.4411.1at 4219.770 kb on - strand, within Xcc-8004.4411.1at 4219.770 kb on - strand, within Xcc-8004.4411.1at 4219.773 kb on + strand, within Xcc-8004.4411.1at 4219.774 kb on - strand, within Xcc-8004.4411.1at 4219.846 kb on + strand, within Xcc-8004.4411.1at 4219.847 kb on - strand, within Xcc-8004.4411.1at 4219.973 kb on + strand, within Xcc-8004.4411.1at 4220.018 kb on + strand, within Xcc-8004.4411.1at 4220.018 kb on + strand, within Xcc-8004.4411.1at 4220.018 kb on + strand, within Xcc-8004.4411.1at 4220.019 kb on - strand, within Xcc-8004.4411.1at 4220.019 kb on - strand, within Xcc-8004.4411.1at 4220.162 kb on + strand, within Xcc-8004.4411.1at 4220.163 kb on - strand, within Xcc-8004.4411.1at 4220.163 kb on - strand, within Xcc-8004.4411.1at 4220.246 kb on + strand, within Xcc-8004.4411.1at 4220.246 kb on + strand, within Xcc-8004.4411.1at 4220.247 kb on - strand, within Xcc-8004.4411.1at 4220.247 kb on - strand, within Xcc-8004.4411.1at 4220.265 kb on - strand, within Xcc-8004.4411.1at 4220.285 kb on + strand, within Xcc-8004.4411.1at 4220.285 kb on + strand, within Xcc-8004.4411.1at 4220.286 kb on - strand, within Xcc-8004.4411.1at 4220.286 kb on - strand, within Xcc-8004.4411.1at 4220.286 kb on - strand, within Xcc-8004.4411.1at 4220.330 kb on + strand, within Xcc-8004.4411.1at 4220.330 kb on + strand, within Xcc-8004.4411.1at 4220.331 kb on - strand, within Xcc-8004.4411.1at 4220.331 kb on - strand, within Xcc-8004.4411.1at 4220.331 kb on - strand, within Xcc-8004.4411.1at 4220.331 kb on - strand, within Xcc-8004.4411.1at 4220.333 kb on + strand, within Xcc-8004.4411.1at 4220.333 kb on + strand, within Xcc-8004.4411.1at 4220.333 kb on + strand, within Xcc-8004.4411.1at 4220.334 kb on - strand, within Xcc-8004.4411.1at 4220.435 kb on + strand, within Xcc-8004.4411.1at 4220.435 kb on + strand, within Xcc-8004.4411.1at 4220.436 kb on - strand, within Xcc-8004.4411.1at 4220.475 kb on - strand, within Xcc-8004.4411.1at 4220.475 kb on - strand, within Xcc-8004.4411.1at 4220.475 kb on - strand, within Xcc-8004.4411.1at 4220.475 kb on - strand, within Xcc-8004.4411.1at 4220.475 kb on - strand, within Xcc-8004.4411.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes)
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4,217,311 + +1.9
4,217,311 + -1.0
4,217,315 - +0.7
4,217,315 - -1.5
4,217,315 - +0.5
4,217,315 - -1.1
4,217,324 + +1.6
4,217,405 + -1.2
4,217,405 + -2.3
4,217,405 + +0.8
4,217,406 - +0.7
4,217,491 - Xcc-8004.4409.1 0.17 -0.8
4,217,750 + Xcc-8004.4409.1 0.44 -0.3
4,217,750 + Xcc-8004.4409.1 0.44 +0.4
4,217,751 - Xcc-8004.4409.1 0.44 -1.7
4,217,751 - Xcc-8004.4409.1 0.44 -3.1
4,217,751 - Xcc-8004.4409.1 0.44 +1.4
4,217,751 - Xcc-8004.4409.1 0.44 +1.8
4,217,751 - Xcc-8004.4409.1 0.44 -0.0
4,217,751 - Xcc-8004.4409.1 0.44 +1.5
4,217,769 - Xcc-8004.4409.1 0.46 -1.9
4,217,769 - Xcc-8004.4409.1 0.46 +1.0
4,217,904 - Xcc-8004.4409.1 0.60 -1.5
4,218,263 - -0.9
4,218,943 + Xcc-8004.4410.1 0.50 +0.5
4,218,943 + Xcc-8004.4410.1 0.50 -0.8
4,218,943 + Xcc-8004.4410.1 0.50 -2.3
4,218,944 - Xcc-8004.4410.1 0.50 +0.5
4,218,944 - Xcc-8004.4410.1 0.50 -4.2
4,218,944 - Xcc-8004.4410.1 0.50 -3.1
4,218,979 + Xcc-8004.4410.1 0.53 +0.5
4,218,979 + Xcc-8004.4410.1 0.53 -4.1
4,218,979 + Xcc-8004.4410.1 0.53 +0.1
4,218,979 + Xcc-8004.4410.1 0.53 -0.9
4,218,980 - Xcc-8004.4410.1 0.53 -2.0
4,218,980 - Xcc-8004.4410.1 0.53 +1.0
4,218,980 - Xcc-8004.4410.1 0.53 +0.0
4,218,991 + Xcc-8004.4410.1 0.53 -0.7
4,218,991 + Xcc-8004.4410.1 0.53 -0.9
4,218,991 + Xcc-8004.4410.1 0.53 -0.8
4,218,991 + Xcc-8004.4410.1 0.53 +0.2
4,218,992 - Xcc-8004.4410.1 0.53 +0.2
4,218,992 - Xcc-8004.4410.1 0.53 +0.2
4,219,118 + Xcc-8004.4410.1 0.63 -1.2
4,219,119 - Xcc-8004.4410.1 0.63 -1.7
4,219,119 - Xcc-8004.4410.1 0.63 +0.4
4,219,119 - Xcc-8004.4410.1 0.63 -0.9
4,219,126 + Xcc-8004.4410.1 0.63 -1.7
4,219,126 + Xcc-8004.4410.1 0.63 +3.3
4,219,126 + Xcc-8004.4410.1 0.63 -0.7
4,219,127 - Xcc-8004.4410.1 0.64 -1.3
4,219,127 - Xcc-8004.4410.1 0.64 -1.8
4,219,127 - Xcc-8004.4410.1 0.64 -1.3
4,219,127 - Xcc-8004.4410.1 0.64 +0.7
4,219,180 + Xcc-8004.4410.1 0.67 -0.2
4,219,181 - Xcc-8004.4410.1 0.68 +0.1
4,219,311 + Xcc-8004.4410.1 0.77 +0.2
4,219,311 + Xcc-8004.4410.1 0.77 -1.1
4,219,311 + Xcc-8004.4410.1 0.77 +1.4
4,219,312 - Xcc-8004.4410.1 0.77 +0.1
4,219,312 - Xcc-8004.4410.1 0.77 -0.9
4,219,312 - Xcc-8004.4410.1 0.77 +0.7
4,219,312 - Xcc-8004.4410.1 0.77 +0.3
4,219,312 - Xcc-8004.4410.1 0.77 +3.9
4,219,635 - -1.1
4,219,670 + -0.9
4,219,671 - +0.1
4,219,697 + +1.4
4,219,697 + -0.5
4,219,697 + -1.4
4,219,718 + +0.9
4,219,736 + +1.7
4,219,769 + Xcc-8004.4411.1 0.11 -2.0
4,219,770 - Xcc-8004.4411.1 0.11 +1.7
4,219,770 - Xcc-8004.4411.1 0.11 +1.8
4,219,773 + Xcc-8004.4411.1 0.11 +0.4
4,219,774 - Xcc-8004.4411.1 0.11 +1.2
4,219,846 + Xcc-8004.4411.1 0.15 +0.7
4,219,847 - Xcc-8004.4411.1 0.15 -0.7
4,219,973 + Xcc-8004.4411.1 0.21 -0.7
4,220,018 + Xcc-8004.4411.1 0.24 +1.7
4,220,018 + Xcc-8004.4411.1 0.24 +2.1
4,220,018 + Xcc-8004.4411.1 0.24 +2.2
4,220,019 - Xcc-8004.4411.1 0.24 +0.9
4,220,019 - Xcc-8004.4411.1 0.24 -0.3
4,220,162 + Xcc-8004.4411.1 0.31 +0.6
4,220,163 - Xcc-8004.4411.1 0.31 +0.5
4,220,163 - Xcc-8004.4411.1 0.31 +0.1
4,220,246 + Xcc-8004.4411.1 0.36 +4.0
4,220,246 + Xcc-8004.4411.1 0.36 -1.1
4,220,247 - Xcc-8004.4411.1 0.36 -2.1
4,220,247 - Xcc-8004.4411.1 0.36 +3.7
4,220,265 - Xcc-8004.4411.1 0.37 -0.5
4,220,285 + Xcc-8004.4411.1 0.38 -1.2
4,220,285 + Xcc-8004.4411.1 0.38 +0.2
4,220,286 - Xcc-8004.4411.1 0.38 -2.3
4,220,286 - Xcc-8004.4411.1 0.38 -1.0
4,220,286 - Xcc-8004.4411.1 0.38 +1.1
4,220,330 + Xcc-8004.4411.1 0.40 +0.9
4,220,330 + Xcc-8004.4411.1 0.40 -1.8
4,220,331 - Xcc-8004.4411.1 0.40 +2.2
4,220,331 - Xcc-8004.4411.1 0.40 -0.4
4,220,331 - Xcc-8004.4411.1 0.40 -0.2
4,220,331 - Xcc-8004.4411.1 0.40 +2.2
4,220,333 + Xcc-8004.4411.1 0.40 -0.9
4,220,333 + Xcc-8004.4411.1 0.40 -1.1
4,220,333 + Xcc-8004.4411.1 0.40 -0.7
4,220,334 - Xcc-8004.4411.1 0.40 +0.4
4,220,435 + Xcc-8004.4411.1 0.46 -0.7
4,220,435 + Xcc-8004.4411.1 0.46 -0.2
4,220,436 - Xcc-8004.4411.1 0.46 -1.5
4,220,475 - Xcc-8004.4411.1 0.48 -2.7
4,220,475 - Xcc-8004.4411.1 0.48 -0.4
4,220,475 - Xcc-8004.4411.1 0.48 -0.1
4,220,475 - Xcc-8004.4411.1 0.48 +1.0
4,220,475 - Xcc-8004.4411.1 0.48 +0.1

Or see this region's nucleotide sequence