Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4326.1 and Xcc-8004.4327.1 overlap by 28 nucleotides Xcc-8004.4327.1 and Xcc-8004.4328.1 are separated by 18 nucleotides Xcc-8004.4328.1 and Xcc-8004.4330.1 are separated by 33 nucleotides Xcc-8004.4330.1 and Xcc-8004.4329.1 overlap by 39 nucleotides
Xcc-8004.4326.1: Xcc-8004.4326.1 - phosphoglycerate mutase, at 4,146,778 to 4,147,365
Xcc-8004.4326.1
Xcc-8004.4327.1: Xcc-8004.4327.1 - putative; ORF located using Glimmer/Genemark, at 4,147,338 to 4,147,538
Xcc-8004.4327.1
Xcc-8004.4328.1: Xcc-8004.4328.1 - putative; ORF located using Glimmer/Genemark, at 4,147,557 to 4,148,324
Xcc-8004.4328.1
Xcc-8004.4330.1: Xcc-8004.4330.1 - hypothetical protein, at 4,148,358 to 4,148,483
Xcc-8004.4330.1
Xcc-8004.4329.1: Xcc-8004.4329.1 - D-galactose 1-dehydrogenase (EC 1.1.1.48), at 4,148,445 to 4,149,398
Xcc-8004.4329.1
Position (kb) 4147
4148 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4146.442 kb on + strand at 4146.532 kb on + strand at 4146.537 kb on - strand at 4146.606 kb on - strand at 4146.667 kb on - strand at 4146.667 kb on - strand at 4146.667 kb on - strand at 4146.708 kb on + strand at 4146.709 kb on - strand at 4146.775 kb on + strand at 4147.035 kb on + strand, within Xcc-8004.4326.1 at 4147.035 kb on + strand, within Xcc-8004.4326.1 at 4147.060 kb on + strand, within Xcc-8004.4326.1 at 4147.123 kb on + strand, within Xcc-8004.4326.1 at 4147.174 kb on + strand, within Xcc-8004.4326.1 at 4147.175 kb on - strand, within Xcc-8004.4326.1 at 4147.261 kb on - strand, within Xcc-8004.4326.1 at 4147.507 kb on + strand, within Xcc-8004.4327.1 at 4147.672 kb on + strand, within Xcc-8004.4328.1 at 4147.679 kb on - strand, within Xcc-8004.4328.1 at 4147.679 kb on - strand, within Xcc-8004.4328.1 at 4147.679 kb on - strand, within Xcc-8004.4328.1 at 4147.742 kb on - strand, within Xcc-8004.4328.1 at 4147.827 kb on + strand, within Xcc-8004.4328.1 at 4147.828 kb on - strand, within Xcc-8004.4328.1 at 4147.828 kb on - strand, within Xcc-8004.4328.1 at 4147.999 kb on - strand, within Xcc-8004.4328.1 at 4148.002 kb on + strand, within Xcc-8004.4328.1 at 4148.178 kb on + strand, within Xcc-8004.4328.1 at 4148.323 kb on - strand at 4148.353 kb on + strand at 4148.354 kb on - strand at 4148.433 kb on - strand, within Xcc-8004.4330.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes) remove 4,146,442 + -2.3 4,146,532 + -1.8 4,146,537 - -0.7 4,146,606 - +0.5 4,146,667 - -0.9 4,146,667 - +1.7 4,146,667 - -0.7 4,146,708 + -1.9 4,146,709 - +3.2 4,146,775 + -1.9 4,147,035 + Xcc-8004.4326.1 0.44 +0.6 4,147,035 + Xcc-8004.4326.1 0.44 +2.5 4,147,060 + Xcc-8004.4326.1 0.48 -1.8 4,147,123 + Xcc-8004.4326.1 0.59 -0.6 4,147,174 + Xcc-8004.4326.1 0.67 -0.9 4,147,175 - Xcc-8004.4326.1 0.68 -0.9 4,147,261 - Xcc-8004.4326.1 0.82 +0.7 4,147,507 + Xcc-8004.4327.1 0.84 -1.4 4,147,672 + Xcc-8004.4328.1 0.15 +0.4 4,147,679 - Xcc-8004.4328.1 0.16 +0.8 4,147,679 - Xcc-8004.4328.1 0.16 +0.3 4,147,679 - Xcc-8004.4328.1 0.16 -1.3 4,147,742 - Xcc-8004.4328.1 0.24 -0.1 4,147,827 + Xcc-8004.4328.1 0.35 +0.1 4,147,828 - Xcc-8004.4328.1 0.35 +0.6 4,147,828 - Xcc-8004.4328.1 0.35 -3.2 4,147,999 - Xcc-8004.4328.1 0.58 -1.1 4,148,002 + Xcc-8004.4328.1 0.58 +1.2 4,148,178 + Xcc-8004.4328.1 0.81 +1.7 4,148,323 - -3.5 4,148,353 + +0.4 4,148,354 - -1.2 4,148,433 - Xcc-8004.4330.1 0.60 +1.6
Or see this region's nucleotide sequence