Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4246.1 and Xcc-8004.4247.1 are separated by 144 nucleotides Xcc-8004.4247.1 and Xcc-8004.4248.1 are separated by 33 nucleotides Xcc-8004.4248.1 and Xcc-8004.4249.1 are separated by 86 nucleotides
Xcc-8004.4246.1: Xcc-8004.4246.1 - FIG01212910: hypothetical protein, at 4,069,360 to 4,069,818
Xcc-8004.4246.1
Xcc-8004.4247.1: Xcc-8004.4247.1 - Transcriptional regulator, MarR family, at 4,069,963 to 4,070,433
Xcc-8004.4247.1
Xcc-8004.4248.1: Xcc-8004.4248.1 - Enoyl-CoA hydratase (EC 4.2.1.17), at 4,070,467 to 4,071,294
Xcc-8004.4248.1
Xcc-8004.4249.1: Xcc-8004.4249.1 - Aldehyde dehydrogenase (EC 1.2.1.3), at 4,071,381 to 4,072,535
Xcc-8004.4249.1
Position (kb) 4070
4071
4072 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4069.657 kb on + strand, within Xcc-8004.4246.1 at 4069.658 kb on - strand, within Xcc-8004.4246.1 at 4069.761 kb on + strand, within Xcc-8004.4246.1 at 4069.761 kb on + strand, within Xcc-8004.4246.1 at 4069.816 kb on + strand at 4069.816 kb on + strand at 4069.816 kb on + strand at 4069.817 kb on - strand at 4069.817 kb on - strand at 4069.898 kb on + strand at 4069.902 kb on + strand at 4069.902 kb on + strand at 4070.000 kb on - strand at 4070.245 kb on + strand, within Xcc-8004.4247.1 at 4070.245 kb on + strand, within Xcc-8004.4247.1 at 4070.246 kb on - strand, within Xcc-8004.4247.1 at 4070.246 kb on - strand, within Xcc-8004.4247.1 at 4070.313 kb on + strand, within Xcc-8004.4247.1 at 4070.314 kb on - strand, within Xcc-8004.4247.1 at 4070.439 kb on + strand at 4070.440 kb on - strand at 4070.454 kb on + strand at 4070.454 kb on + strand at 4070.455 kb on - strand at 4070.644 kb on - strand, within Xcc-8004.4248.1 at 4070.678 kb on - strand, within Xcc-8004.4248.1 at 4070.737 kb on + strand, within Xcc-8004.4248.1 at 4070.738 kb on - strand, within Xcc-8004.4248.1 at 4071.052 kb on - strand, within Xcc-8004.4248.1 at 4071.142 kb on + strand, within Xcc-8004.4248.1 at 4071.160 kb on + strand, within Xcc-8004.4248.1 at 4071.160 kb on + strand, within Xcc-8004.4248.1 at 4071.161 kb on - strand, within Xcc-8004.4248.1 at 4071.247 kb on + strand at 4071.436 kb on + strand at 4071.437 kb on - strand at 4071.437 kb on - strand at 4071.523 kb on - strand, within Xcc-8004.4249.1 at 4071.757 kb on - strand, within Xcc-8004.4249.1 at 4071.759 kb on + strand, within Xcc-8004.4249.1 at 4071.759 kb on + strand, within Xcc-8004.4249.1 at 4071.759 kb on + strand, within Xcc-8004.4249.1 at 4071.759 kb on + strand, within Xcc-8004.4249.1 at 4071.897 kb on + strand, within Xcc-8004.4249.1 at 4071.898 kb on - strand, within Xcc-8004.4249.1 at 4071.898 kb on - strand, within Xcc-8004.4249.1 at 4071.898 kb on - strand, within Xcc-8004.4249.1 at 4071.972 kb on + strand, within Xcc-8004.4249.1 at 4071.972 kb on + strand, within Xcc-8004.4249.1 at 4071.973 kb on - strand, within Xcc-8004.4249.1 at 4071.973 kb on - strand, within Xcc-8004.4249.1 at 4071.973 kb on - strand, within Xcc-8004.4249.1 at 4071.973 kb on - strand, within Xcc-8004.4249.1 at 4071.973 kb on - strand, within Xcc-8004.4249.1 at 4071.973 kb on - strand, within Xcc-8004.4249.1 at 4071.974 kb on + strand, within Xcc-8004.4249.1 at 4071.975 kb on - strand, within Xcc-8004.4249.1 at 4072.285 kb on + strand, within Xcc-8004.4249.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes) remove 4,069,657 + Xcc-8004.4246.1 0.65 +0.2 4,069,658 - Xcc-8004.4246.1 0.65 +1.9 4,069,761 + Xcc-8004.4246.1 0.87 +1.3 4,069,761 + Xcc-8004.4246.1 0.87 -0.6 4,069,816 + +1.1 4,069,816 + -1.6 4,069,816 + -0.6 4,069,817 - -0.8 4,069,817 - -0.4 4,069,898 + -0.1 4,069,902 + -1.0 4,069,902 + +0.6 4,070,000 - -2.3 4,070,245 + Xcc-8004.4247.1 0.60 -0.5 4,070,245 + Xcc-8004.4247.1 0.60 -0.3 4,070,246 - Xcc-8004.4247.1 0.60 -2.1 4,070,246 - Xcc-8004.4247.1 0.60 +0.6 4,070,313 + Xcc-8004.4247.1 0.74 -0.8 4,070,314 - Xcc-8004.4247.1 0.75 -1.6 4,070,439 + -0.9 4,070,440 - +0.3 4,070,454 + +1.2 4,070,454 + +1.3 4,070,455 - -2.0 4,070,644 - Xcc-8004.4248.1 0.21 -0.7 4,070,678 - Xcc-8004.4248.1 0.25 -0.6 4,070,737 + Xcc-8004.4248.1 0.33 -1.5 4,070,738 - Xcc-8004.4248.1 0.33 -2.5 4,071,052 - Xcc-8004.4248.1 0.71 -0.6 4,071,142 + Xcc-8004.4248.1 0.82 -1.6 4,071,160 + Xcc-8004.4248.1 0.84 -2.3 4,071,160 + Xcc-8004.4248.1 0.84 -2.7 4,071,161 - Xcc-8004.4248.1 0.84 -2.8 4,071,247 + -0.7 4,071,436 + +1.5 4,071,437 - +2.9 4,071,437 - -0.7 4,071,523 - Xcc-8004.4249.1 0.12 +0.3 4,071,757 - Xcc-8004.4249.1 0.33 -0.4 4,071,759 + Xcc-8004.4249.1 0.33 +3.7 4,071,759 + Xcc-8004.4249.1 0.33 +1.0 4,071,759 + Xcc-8004.4249.1 0.33 +1.4 4,071,759 + Xcc-8004.4249.1 0.33 +1.3 4,071,897 + Xcc-8004.4249.1 0.45 +0.1 4,071,898 - Xcc-8004.4249.1 0.45 -2.0 4,071,898 - Xcc-8004.4249.1 0.45 +4.6 4,071,898 - Xcc-8004.4249.1 0.45 -0.1 4,071,972 + Xcc-8004.4249.1 0.51 -0.2 4,071,972 + Xcc-8004.4249.1 0.51 +1.5 4,071,973 - Xcc-8004.4249.1 0.51 -0.1 4,071,973 - Xcc-8004.4249.1 0.51 -2.7 4,071,973 - Xcc-8004.4249.1 0.51 +0.3 4,071,973 - Xcc-8004.4249.1 0.51 -2.1 4,071,973 - Xcc-8004.4249.1 0.51 -2.3 4,071,973 - Xcc-8004.4249.1 0.51 -0.4 4,071,974 + Xcc-8004.4249.1 0.51 -0.6 4,071,975 - Xcc-8004.4249.1 0.51 +0.4 4,072,285 + Xcc-8004.4249.1 0.78 -1.6
Or see this region's nucleotide sequence