Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.407.1 and Xcc-8004.408.1 are separated by 136 nucleotides Xcc-8004.408.1 and Xcc-8004.409.1 are separated by 170 nucleotides Xcc-8004.409.1 and Xcc-8004.410.1 are separated by 303 nucleotides Xcc-8004.410.1 and Xcc-8004.411.1 overlap by 4 nucleotides
Xcc-8004.407.1: Xcc-8004.407.1 - NADPH:quinone oxidoreductase 2, at 394,602 to 395,489
Xcc-8004.407.1
Xcc-8004.408.1: Xcc-8004.408.1 - Redox-sensing transcriptional regulator QorR, putative, at 395,626 to 396,054
Xcc-8004.408.1
Xcc-8004.409.1: Xcc-8004.409.1 - hypothetical protein, at 396,225 to 396,419
Xcc-8004.409.1
Xcc-8004.410.1: Xcc-8004.410.1 - putative; ORF located using Glimmer/Genemark, at 396,723 to 397,223
Xcc-8004.410.1
Xcc-8004.411.1: Xcc-8004.411.1 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 397,220 to 399,331
Xcc-8004.411.1
Position (kb) 396
397 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 395.314 kb on + strand, within Xcc-8004.407.1 at 395.315 kb on - strand, within Xcc-8004.407.1 at 395.315 kb on - strand, within Xcc-8004.407.1 at 395.328 kb on + strand, within Xcc-8004.407.1 at 395.328 kb on + strand, within Xcc-8004.407.1 at 395.328 kb on + strand, within Xcc-8004.407.1 at 395.328 kb on + strand, within Xcc-8004.407.1 at 395.328 kb on + strand, within Xcc-8004.407.1 at 395.328 kb on + strand, within Xcc-8004.407.1 at 395.329 kb on - strand, within Xcc-8004.407.1 at 395.329 kb on - strand, within Xcc-8004.407.1 at 395.329 kb on - strand, within Xcc-8004.407.1 at 395.329 kb on - strand, within Xcc-8004.407.1 at 395.329 kb on - strand, within Xcc-8004.407.1 at 395.385 kb on + strand, within Xcc-8004.407.1 at 395.385 kb on + strand, within Xcc-8004.407.1 at 395.385 kb on + strand, within Xcc-8004.407.1 at 395.386 kb on - strand, within Xcc-8004.407.1 at 395.386 kb on - strand, within Xcc-8004.407.1 at 395.386 kb on - strand, within Xcc-8004.407.1 at 395.386 kb on - strand, within Xcc-8004.407.1 at 395.527 kb on - strand at 395.555 kb on + strand at 395.555 kb on + strand at 395.556 kb on - strand at 395.556 kb on - strand at 395.556 kb on - strand at 395.609 kb on + strand at 395.803 kb on - strand, within Xcc-8004.408.1 at 395.803 kb on - strand, within Xcc-8004.408.1 at 395.803 kb on - strand, within Xcc-8004.408.1 at 395.803 kb on - strand, within Xcc-8004.408.1 at 395.803 kb on - strand, within Xcc-8004.408.1 at 395.872 kb on + strand, within Xcc-8004.408.1 at 395.872 kb on + strand, within Xcc-8004.408.1 at 395.899 kb on + strand, within Xcc-8004.408.1 at 395.899 kb on + strand, within Xcc-8004.408.1 at 395.899 kb on + strand, within Xcc-8004.408.1 at 395.899 kb on + strand, within Xcc-8004.408.1 at 395.899 kb on + strand, within Xcc-8004.408.1 at 395.900 kb on - strand, within Xcc-8004.408.1 at 395.900 kb on - strand, within Xcc-8004.408.1 at 395.900 kb on - strand, within Xcc-8004.408.1 at 395.900 kb on - strand, within Xcc-8004.408.1 at 395.900 kb on - strand, within Xcc-8004.408.1 at 395.900 kb on - strand, within Xcc-8004.408.1 at 395.900 kb on - strand, within Xcc-8004.408.1 at 395.900 kb on - strand, within Xcc-8004.408.1 at 396.111 kb on + strand at 396.111 kb on + strand at 396.111 kb on + strand at 396.111 kb on + strand at 396.112 kb on - strand at 396.112 kb on - strand at 396.112 kb on - strand at 396.112 kb on - strand at 396.191 kb on + strand at 396.191 kb on + strand at 396.191 kb on + strand at 396.191 kb on + strand at 396.191 kb on + strand at 396.191 kb on + strand at 396.192 kb on - strand at 396.192 kb on - strand at 396.192 kb on - strand at 396.192 kb on - strand at 396.192 kb on - strand at 396.192 kb on - strand at 396.192 kb on - strand at 396.192 kb on - strand at 396.192 kb on - strand at 396.192 kb on - strand at 396.210 kb on - strand at 396.228 kb on + strand at 396.228 kb on + strand at 396.228 kb on + strand at 396.228 kb on + strand at 396.228 kb on + strand at 396.228 kb on + strand at 396.228 kb on + strand at 396.229 kb on - strand at 396.229 kb on - strand at 396.307 kb on - strand, within Xcc-8004.409.1 at 396.385 kb on - strand, within Xcc-8004.409.1 at 396.385 kb on - strand, within Xcc-8004.409.1 at 396.385 kb on - strand, within Xcc-8004.409.1 at 396.396 kb on + strand, within Xcc-8004.409.1 at 396.440 kb on + strand at 396.440 kb on + strand at 396.440 kb on + strand at 396.440 kb on + strand at 396.440 kb on + strand at 396.441 kb on - strand at 396.558 kb on + strand at 396.558 kb on + strand at 396.649 kb on + strand at 396.730 kb on + strand at 397.041 kb on + strand, within Xcc-8004.410.1 at 397.081 kb on - strand, within Xcc-8004.410.1 at 397.268 kb on + strand at 397.269 kb on - strand at 397.323 kb on + strand at 397.323 kb on + strand at 397.323 kb on + strand at 397.324 kb on - strand at 397.324 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes) remove 395,314 + Xcc-8004.407.1 0.80 +0.2 395,315 - Xcc-8004.407.1 0.80 -1.0 395,315 - Xcc-8004.407.1 0.80 +0.2 395,328 + Xcc-8004.407.1 0.82 +0.3 395,328 + Xcc-8004.407.1 0.82 +0.3 395,328 + Xcc-8004.407.1 0.82 +0.5 395,328 + Xcc-8004.407.1 0.82 +0.8 395,328 + Xcc-8004.407.1 0.82 -3.0 395,328 + Xcc-8004.407.1 0.82 +0.3 395,329 - Xcc-8004.407.1 0.82 -3.4 395,329 - Xcc-8004.407.1 0.82 -0.0 395,329 - Xcc-8004.407.1 0.82 -1.8 395,329 - Xcc-8004.407.1 0.82 -0.3 395,329 - Xcc-8004.407.1 0.82 -0.7 395,385 + Xcc-8004.407.1 0.88 +0.6 395,385 + Xcc-8004.407.1 0.88 -0.7 395,385 + Xcc-8004.407.1 0.88 -0.5 395,386 - Xcc-8004.407.1 0.88 +1.2 395,386 - Xcc-8004.407.1 0.88 -1.2 395,386 - Xcc-8004.407.1 0.88 -0.0 395,386 - Xcc-8004.407.1 0.88 -1.6 395,527 - -2.0 395,555 + +1.3 395,555 + +0.6 395,556 - +0.7 395,556 - +2.9 395,556 - -2.1 395,609 + +0.2 395,803 - Xcc-8004.408.1 0.41 -0.2 395,803 - Xcc-8004.408.1 0.41 -3.4 395,803 - Xcc-8004.408.1 0.41 -1.2 395,803 - Xcc-8004.408.1 0.41 -2.0 395,803 - Xcc-8004.408.1 0.41 +0.3 395,872 + Xcc-8004.408.1 0.57 +0.3 395,872 + Xcc-8004.408.1 0.57 +1.3 395,899 + Xcc-8004.408.1 0.64 -0.9 395,899 + Xcc-8004.408.1 0.64 +2.1 395,899 + Xcc-8004.408.1 0.64 +2.2 395,899 + Xcc-8004.408.1 0.64 +0.4 395,899 + Xcc-8004.408.1 0.64 +0.6 395,900 - Xcc-8004.408.1 0.64 +1.7 395,900 - Xcc-8004.408.1 0.64 +0.2 395,900 - Xcc-8004.408.1 0.64 -2.5 395,900 - Xcc-8004.408.1 0.64 -2.0 395,900 - Xcc-8004.408.1 0.64 +2.2 395,900 - Xcc-8004.408.1 0.64 -0.5 395,900 - Xcc-8004.408.1 0.64 -0.3 395,900 - Xcc-8004.408.1 0.64 +0.1 396,111 + +1.7 396,111 + +0.0 396,111 + -1.6 396,111 + +1.4 396,112 - +0.7 396,112 - -1.7 396,112 - +0.9 396,112 - -0.6 396,191 + -0.8 396,191 + +4.0 396,191 + +1.6 396,191 + +0.5 396,191 + -1.7 396,191 + -0.0 396,192 - -0.7 396,192 - +0.4 396,192 - +0.0 396,192 - -1.2 396,192 - -1.9 396,192 - -1.3 396,192 - +0.9 396,192 - -0.5 396,192 - +0.7 396,192 - -0.5 396,210 - -1.1 396,228 + -1.1 396,228 + +0.1 396,228 + -1.5 396,228 + +0.8 396,228 + -2.3 396,228 + +1.7 396,228 + -1.9 396,229 - -1.5 396,229 - -0.8 396,307 - Xcc-8004.409.1 0.42 -0.9 396,385 - Xcc-8004.409.1 0.82 +2.2 396,385 - Xcc-8004.409.1 0.82 -4.7 396,385 - Xcc-8004.409.1 0.82 +0.6 396,396 + Xcc-8004.409.1 0.88 +0.1 396,440 + -0.5 396,440 + -0.8 396,440 + +1.0 396,440 + -0.4 396,440 + -2.7 396,441 - +2.3 396,558 + +1.3 396,558 + -1.3 396,649 + -0.4 396,730 + +0.1 397,041 + Xcc-8004.410.1 0.63 +0.5 397,081 - Xcc-8004.410.1 0.71 +0.1 397,268 + +1.3 397,269 - -1.7 397,323 + +2.5 397,323 + -0.1 397,323 + +0.5 397,324 - +0.6 397,324 - +0.3
Or see this region's nucleotide sequence