Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4037.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylemvessel barcodes Location 3 6 dpi (25 plantes)
3,899,146	+		Xcc-8004.4035.1	0.81	-0.4
3,899,146	+		Xcc-8004.4035.1	0.81	-0.8
3,899,357	+				+0.9
3,899,357	+				-1.8
3,899,357	+				-0.3
3,899,357	+				-3.3
3,899,358	-				-1.5
3,899,358	-				-0.2
3,899,358	-				-1.1
3,899,394	+				-2.1
3,899,394	+				+0.4
3,899,394	+				-1.7
3,899,394	+				+0.8
3,899,394	+				-0.8
3,899,394	+				-1.4
3,899,394	+				-0.1
3,899,394	+				+1.7
3,899,394	+				-1.5
3,899,394	+				-1.4
3,899,394	+				+0.7
3,899,394	+				+0.4
3,899,394	+				-0.6
3,899,394	+				+0.1
3,899,394	+				-1.0
3,899,394	+				+0.7
3,899,394	+				-0.3
3,899,394	+				+0.7
3,899,394	+				-0.5
3,899,394	+				-2.4
3,899,394	+				+0.8
3,899,394	+				+1.2
3,899,395	-				-0.1
3,899,395	-				+2.7
3,899,395	-				-3.3
3,899,395	-				-1.9
3,899,395	-				-0.9
3,899,395	-				-3.2
3,899,395	-				-1.1
3,899,395	-				-2.4
3,899,395	-				+1.0
3,899,395	-				+1.7
3,899,395	-				+1.4
3,899,395	-				-0.6
3,899,395	-				-1.3
3,899,395	-				+0.5
3,899,395	-				+1.8
3,899,395	-				+1.1
3,899,395	-				+0.1
3,899,395	-				-1.5
3,899,395	-				+0.6
3,899,395	-				+0.6
3,899,532	-		Xcc-8004.4036.1	0.23	-3.1
3,899,532	-		Xcc-8004.4036.1	0.23	+1.7
3,899,580	+		Xcc-8004.4036.1	0.29	+0.1
3,899,706	+		Xcc-8004.4036.1	0.45	+1.0
3,899,706	+		Xcc-8004.4036.1	0.45	-0.7
3,899,706	+		Xcc-8004.4036.1	0.45	-2.3
3,899,706	+		Xcc-8004.4036.1	0.45	+1.6
3,899,706	+		Xcc-8004.4036.1	0.45	+1.0
3,899,706	+		Xcc-8004.4036.1	0.45	-2.7
3,899,706	+		Xcc-8004.4036.1	0.45	-0.1
3,899,707	-		Xcc-8004.4036.1	0.45	-0.2
3,899,710	+		Xcc-8004.4036.1	0.46	-0.6
3,899,710	+		Xcc-8004.4036.1	0.46	-1.1
3,899,710	+		Xcc-8004.4036.1	0.46	-1.9
3,899,710	+		Xcc-8004.4036.1	0.46	-0.1
3,899,710	+		Xcc-8004.4036.1	0.46	+0.8
3,899,710	+		Xcc-8004.4036.1	0.46	-2.3
3,899,710	+		Xcc-8004.4036.1	0.46	-1.0
3,899,710	+		Xcc-8004.4036.1	0.46	-1.8
3,899,710	+		Xcc-8004.4036.1	0.46	-1.9
3,899,710	+		Xcc-8004.4036.1	0.46	+0.2
3,899,710	+		Xcc-8004.4036.1	0.46	-0.5
3,899,710	+		Xcc-8004.4036.1	0.46	+2.7
3,899,710	+		Xcc-8004.4036.1	0.46	+0.1
3,899,710	+		Xcc-8004.4036.1	0.46	-0.8
3,899,710	+		Xcc-8004.4036.1	0.46	+1.7
3,899,711	-		Xcc-8004.4036.1	0.46	+2.2
3,899,711	-		Xcc-8004.4036.1	0.46	-2.6
3,899,711	-		Xcc-8004.4036.1	0.46	+1.7
3,899,711	-		Xcc-8004.4036.1	0.46	-0.5
3,899,711	-		Xcc-8004.4036.1	0.46	-0.5
3,899,711	-		Xcc-8004.4036.1	0.46	+0.2
3,899,711	-		Xcc-8004.4036.1	0.46	-1.5
3,899,711	-		Xcc-8004.4036.1	0.46	-0.1
3,899,711	-		Xcc-8004.4036.1	0.46	-3.2
3,899,711	-		Xcc-8004.4036.1	0.46	-2.2
3,899,711	-		Xcc-8004.4036.1	0.46	-2.0
3,899,711	-		Xcc-8004.4036.1	0.46	+1.0
3,899,711	-		Xcc-8004.4036.1	0.46	-0.9
3,899,711	-		Xcc-8004.4036.1	0.46	+0.8
3,899,738	+		Xcc-8004.4036.1	0.49	-1.4
3,899,752	+		Xcc-8004.4036.1	0.51	+0.7
3,899,752	+		Xcc-8004.4036.1	0.51	-0.7
3,899,752	+		Xcc-8004.4036.1	0.51	+0.7
3,899,752	+		Xcc-8004.4036.1	0.51	-1.3
3,899,753	-		Xcc-8004.4036.1	0.51	-3.4
3,899,777	+		Xcc-8004.4036.1	0.55	-2.3
3,899,778	-		Xcc-8004.4036.1	0.55	+1.1
3,899,778	-		Xcc-8004.4036.1	0.55	+1.7
3,899,856	+		Xcc-8004.4036.1	0.65	+4.2
3,899,856	+		Xcc-8004.4036.1	0.65	+1.7
3,899,856	+		Xcc-8004.4036.1	0.65	-1.5
3,899,856	+		Xcc-8004.4036.1	0.65	-0.5
3,899,856	+		Xcc-8004.4036.1	0.65	-0.7
3,899,856	+		Xcc-8004.4036.1	0.65	-3.3
3,899,856	+		Xcc-8004.4036.1	0.65	+1.7
3,899,856	+		Xcc-8004.4036.1	0.65	+0.9
3,899,857	-		Xcc-8004.4036.1	0.65	-0.6
3,899,857	-		Xcc-8004.4036.1	0.65	-1.6
3,899,857	-		Xcc-8004.4036.1	0.65	-2.9
3,899,857	-		Xcc-8004.4036.1	0.65	+0.1
3,899,857	-		Xcc-8004.4036.1	0.65	+0.7
3,899,857	-		Xcc-8004.4036.1	0.65	+1.5
3,899,857	-		Xcc-8004.4036.1	0.65	-0.7
3,899,857	-		Xcc-8004.4036.1	0.65	+0.8
3,899,857	-		Xcc-8004.4036.1	0.65	-0.1
3,899,857	-		Xcc-8004.4036.1	0.65	-1.1
3,899,857	-		Xcc-8004.4036.1	0.65	-2.0
3,899,960	+		Xcc-8004.4036.1	0.78	-1.5
3,899,960	+		Xcc-8004.4036.1	0.78	+1.9
3,899,960	+		Xcc-8004.4036.1	0.78	-2.4
3,899,960	+		Xcc-8004.4036.1	0.78	+0.5
3,899,961	-		Xcc-8004.4036.1	0.79	+0.3
3,899,961	-		Xcc-8004.4036.1	0.79	-2.8
3,900,017	+		Xcc-8004.4036.1	0.86	-1.3
3,900,017	+		Xcc-8004.4036.1	0.86	-0.1
3,900,017	+		Xcc-8004.4036.1	0.86	-3.5
3,900,017	+		Xcc-8004.4036.1	0.86	+0.2
3,900,017	+		Xcc-8004.4036.1	0.86	+0.4
3,900,017	+		Xcc-8004.4036.1	0.86	+1.2
3,900,017	+		Xcc-8004.4036.1	0.86	+2.0
3,900,017	+		Xcc-8004.4036.1	0.86	-0.6
3,900,018	-		Xcc-8004.4036.1	0.86	-0.3
3,900,018	-		Xcc-8004.4036.1	0.86	-1.7
3,900,018	-		Xcc-8004.4036.1	0.86	-2.0
3,900,018	-		Xcc-8004.4036.1	0.86	-1.3
3,900,018	-		Xcc-8004.4036.1	0.86	-3.2
3,900,018	-		Xcc-8004.4036.1	0.86	+0.7
3,900,018	-		Xcc-8004.4036.1	0.86	-2.0
3,900,018	-		Xcc-8004.4036.1	0.86	-1.1
3,900,082	+				-2.0
3,900,082	+				+0.9
3,900,234	+				-2.7
3,900,389	+		Xcc-8004.4037.1	0.23	+0.2
3,900,389	+		Xcc-8004.4037.1	0.23	-2.0
3,900,390	-		Xcc-8004.4037.1	0.23	+1.3
3,900,558	-		Xcc-8004.4037.1	0.37	-0.5
3,900,605	+		Xcc-8004.4037.1	0.41	-0.7
3,900,606	-		Xcc-8004.4037.1	0.41	+2.3
3,900,620	+		Xcc-8004.4037.1	0.43	-2.3
3,900,620	+		Xcc-8004.4037.1	0.43	-2.7
3,900,620	+		Xcc-8004.4037.1	0.43	-1.8
3,900,620	+		Xcc-8004.4037.1	0.43	-1.1
3,900,621	-		Xcc-8004.4037.1	0.43	-1.0
3,900,621	-		Xcc-8004.4037.1	0.43	+0.1
3,900,662	+		Xcc-8004.4037.1	0.46	-1.8
3,900,663	-		Xcc-8004.4037.1	0.46	+1.5
3,900,663	-		Xcc-8004.4037.1	0.46	+1.9
3,900,677	+		Xcc-8004.4037.1	0.48	-0.8
3,900,678	-		Xcc-8004.4037.1	0.48	+1.2
3,900,764	+		Xcc-8004.4037.1	0.55	+2.1
3,900,764	+		Xcc-8004.4037.1	0.55	-0.8
3,900,764	+		Xcc-8004.4037.1	0.55	-1.1
3,900,764	+		Xcc-8004.4037.1	0.55	+0.8
3,900,764	+		Xcc-8004.4037.1	0.55	+0.4
3,900,764	+		Xcc-8004.4037.1	0.55	+0.5
3,900,764	+		Xcc-8004.4037.1	0.55	-3.0
3,900,764	+		Xcc-8004.4037.1	0.55	+3.1
3,900,765	-		Xcc-8004.4037.1	0.55	+0.0
3,900,765	-		Xcc-8004.4037.1	0.55	-1.6
3,900,765	-		Xcc-8004.4037.1	0.55	-1.7
3,900,765	-		Xcc-8004.4037.1	0.55	-1.5
3,900,765	-		Xcc-8004.4037.1	0.55	+1.8
3,900,770	+		Xcc-8004.4037.1	0.56	+0.7
3,900,770	+		Xcc-8004.4037.1	0.56	-1.2
3,900,771	-		Xcc-8004.4037.1	0.56	+0.5
3,900,771	-		Xcc-8004.4037.1	0.56	-0.3
3,900,771	-		Xcc-8004.4037.1	0.56	-1.6
3,901,075	+		Xcc-8004.4037.1	0.82	-1.4
3,901,075	+		Xcc-8004.4037.1	0.82	-0.5
3,901,075	+		Xcc-8004.4037.1	0.82	-0.7
3,901,076	-		Xcc-8004.4037.1	0.82	-0.4
3,901,076	-		Xcc-8004.4037.1	0.82	+0.1
3,901,156	+		Xcc-8004.4037.1	0.89	-2.1
3,901,190	+				-1.8
3,901,294	+				-0.9
3,901,294	+				-0.7
3,901,294	+				-1.0
3,901,294	+				-0.3
3,901,294	+				+2.5
3,901,294	+				-0.8
3,901,295	-				+0.9
3,901,355	+				+1.6
3,901,355	+				+0.3
3,901,355	+				+0.1
3,901,355	+				-0.5
3,901,355	+				+1.8
3,901,355	+				-0.4
3,901,355	+				-1.0
3,901,355	+				+0.4
3,901,356	-				-0.8
3,901,356	-				+1.5
3,901,356	-				+1.7
3,901,356	-				+1.7
3,901,356	-				-0.2
3,901,356	-				-2.7
3,901,356	-				-1.3
3,901,356	-				+0.1
3,901,356	-				+0.3
3,901,356	-				-0.4
3,901,425	-				-0.3
3,901,439	+				+0.4
3,901,439	+				+1.1
3,901,439	+				+0.1
3,901,440	-				-0.6
3,901,602	+				-1.9
3,901,602	+				-0.8
3,901,603	-				-1.2
3,901,637	+				-2.7
3,901,637	+				+0.1
3,901,637	+				+3.7
3,901,638	-				-2.5
3,901,638	-				-0.2
3,901,641	+				+1.4
3,901,641	+				-1.0
3,901,641	+				-3.1
3,901,641	+				+0.6
3,901,641	+				+0.7
3,901,641	+				+0.2
3,901,642	-				+0.0
3,901,642	-				+0.6
3,901,705	+				+0.2
3,901,705	+				+0.5
3,901,706	-				+0.3
3,901,706	-				+2.8
3,901,722	+				-0.7
3,901,723	-				+2.5
3,901,798	+		Xcc-8004.4038.1	0.13	+0.1
3,901,799	-		Xcc-8004.4038.1	0.13	-0.5
3,901,799	-		Xcc-8004.4038.1	0.13	-0.2
3,901,847	+		Xcc-8004.4038.1	0.23	-0.9
3,901,847	+		Xcc-8004.4038.1	0.23	-1.1
3,901,848	-		Xcc-8004.4038.1	0.23	-0.2
3,902,080	+		Xcc-8004.4038.1	0.71	+0.3
3,902,140	+		Xcc-8004.4038.1	0.83	+1.1
3,902,140	+		Xcc-8004.4038.1	0.83	-1.2
3,902,142	+		Xcc-8004.4038.1	0.84	+0.1
3,902,196	+				-2.0
3,902,197	-				-2.2
3,902,227	+				-0.6
3,902,227	+				+0.5
3,902,227	+				+1.7
3,902,228	-				+6.0
3,902,228	-				-1.5
3,902,228	-				+1.4
3,902,241	+				-0.3
3,902,241	+				+0.5
3,902,241	+				-0.0
3,902,241	+				+0.6
3,902,241	+				+5.8
3,902,242	-				+0.5
3,902,242	-				-1.7
3,902,242	-				+0.5
3,902,242	-				-1.2
3,902,242	-				-0.3
3,902,242	-				-0.7
3,902,243	+				+1.3
3,902,243	+				-1.2
3,902,244	-				+0.1
3,902,244	-				+1.4
3,902,244	-				+1.1