Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3639.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3637.1 and Xcc-8004.3639.1 are separated by 388 nucleotidesXcc-8004.3639.1 and Xcc-8004.3640.1 are separated by 13 nucleotidesXcc-8004.3640.1 and Xcc-8004.3641.1 are separated by 129 nucleotidesXcc-8004.3641.1 and Xcc-8004.3642.1 are separated by 163 nucleotides Xcc-8004.3637.1: Xcc-8004.3637.1 - hypothetical protein, at 3,519,616 to 3,520,152 Xcc-8004.3637.1 Xcc-8004.3639.1: Xcc-8004.3639.1 - Small-conductance mechanosensitive channel, at 3,520,541 to 3,521,107 Xcc-8004.3639.1 Xcc-8004.3640.1: Xcc-8004.3640.1 - Hypothetical Zinc-finger containing protein, at 3,521,121 to 3,521,387 Xcc-8004.3640.1 Xcc-8004.3641.1: Xcc-8004.3641.1 - FIG01210445: hypothetical protein, at 3,521,517 to 3,521,780 Xcc-8004.3641.1 Xcc-8004.3642.1: Xcc-8004.3642.1 - FIG01211227: hypothetical protein, at 3,521,944 to 3,522,117 Xcc-8004.3642.1 Position (kb) 3520 3521 3522Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 3519.630 kb on + strandat 3519.630 kb on + strandat 3519.630 kb on + strandat 3519.695 kb on + strand, within Xcc-8004.3637.1at 3519.695 kb on + strand, within Xcc-8004.3637.1at 3519.695 kb on + strand, within Xcc-8004.3637.1at 3519.695 kb on + strand, within Xcc-8004.3637.1at 3519.695 kb on + strand, within Xcc-8004.3637.1at 3519.696 kb on - strand, within Xcc-8004.3637.1at 3519.696 kb on - strand, within Xcc-8004.3637.1at 3519.696 kb on - strand, within Xcc-8004.3637.1at 3519.696 kb on - strand, within Xcc-8004.3637.1at 3519.696 kb on - strand, within Xcc-8004.3637.1at 3519.696 kb on - strand, within Xcc-8004.3637.1at 3519.696 kb on - strand, within Xcc-8004.3637.1at 3519.696 kb on - strand, within Xcc-8004.3637.1at 3519.696 kb on - strand, within Xcc-8004.3637.1at 3519.696 kb on - strand, within Xcc-8004.3637.1at 3519.705 kb on + strand, within Xcc-8004.3637.1at 3519.754 kb on + strand, within Xcc-8004.3637.1at 3519.754 kb on + strand, within Xcc-8004.3637.1at 3519.754 kb on + strand, within Xcc-8004.3637.1at 3519.754 kb on + strand, within Xcc-8004.3637.1at 3519.754 kb on + strand, within Xcc-8004.3637.1at 3519.754 kb on + strand, within Xcc-8004.3637.1at 3519.755 kb on - strand, within Xcc-8004.3637.1at 3519.755 kb on - strand, within Xcc-8004.3637.1at 3519.755 kb on - strand, within Xcc-8004.3637.1at 3519.755 kb on - strand, within Xcc-8004.3637.1at 3519.755 kb on - strand, within Xcc-8004.3637.1at 3519.755 kb on - strand, within Xcc-8004.3637.1at 3519.755 kb on - strand, within Xcc-8004.3637.1at 3519.755 kb on - strand, within Xcc-8004.3637.1at 3519.755 kb on - strand, within Xcc-8004.3637.1at 3519.755 kb on - strand, within Xcc-8004.3637.1at 3519.755 kb on - strand, within Xcc-8004.3637.1at 3519.772 kb on + strand, within Xcc-8004.3637.1at 3519.773 kb on - strand, within Xcc-8004.3637.1at 3519.806 kb on + strand, within Xcc-8004.3637.1at 3519.806 kb on + strand, within Xcc-8004.3637.1at 3519.806 kb on + strand, within Xcc-8004.3637.1at 3519.807 kb on - strand, within Xcc-8004.3637.1at 3519.968 kb on + strand, within Xcc-8004.3637.1at 3519.968 kb on + strand, within Xcc-8004.3637.1at 3519.969 kb on - strand, within Xcc-8004.3637.1at 3519.969 kb on - strand, within Xcc-8004.3637.1at 3519.975 kb on - strand, within Xcc-8004.3637.1at 3520.081 kb on - strand, within Xcc-8004.3637.1at 3520.123 kb on + strandat 3520.124 kb on - strandat 3520.139 kb on + strandat 3520.139 kb on + strandat 3520.139 kb on + strandat 3520.140 kb on - strandat 3520.140 kb on - strandat 3520.140 kb on - strandat 3520.140 kb on - strandat 3520.140 kb on - strandat 3520.303 kb on - strandat 3520.303 kb on - strandat 3520.322 kb on - strandat 3520.435 kb on + strandat 3520.435 kb on + strandat 3520.435 kb on + strandat 3520.472 kb on + strandat 3520.480 kb on + strandat 3520.480 kb on + strandat 3520.481 kb on - strandat 3520.485 kb on + strandat 3520.485 kb on + strandat 3520.486 kb on - strandat 3520.486 kb on - strandat 3520.486 kb on - strandat 3520.486 kb on - strandat 3520.500 kb on - strandat 3520.500 kb on - strandat 3520.500 kb on - strandat 3520.500 kb on - strandat 3520.500 kb on - strandat 3520.550 kb on - strandat 3520.550 kb on - strandat 3520.550 kb on - strandat 3520.550 kb on - strandat 3520.682 kb on + strand, within Xcc-8004.3639.1at 3520.682 kb on + strand, within Xcc-8004.3639.1at 3520.682 kb on + strand, within Xcc-8004.3639.1at 3520.683 kb on - strand, within Xcc-8004.3639.1at 3520.683 kb on - strand, within Xcc-8004.3639.1at 3520.752 kb on + strand, within Xcc-8004.3639.1at 3520.752 kb on + strand, within Xcc-8004.3639.1at 3520.753 kb on - strand, within Xcc-8004.3639.1at 3520.753 kb on - strand, within Xcc-8004.3639.1at 3520.753 kb on - strand, within Xcc-8004.3639.1at 3520.753 kb on - strand, within Xcc-8004.3639.1at 3520.988 kb on + strand, within Xcc-8004.3639.1at 3520.988 kb on + strand, within Xcc-8004.3639.1at 3520.988 kb on + strand, within Xcc-8004.3639.1at 3520.988 kb on + strand, within Xcc-8004.3639.1at 3520.989 kb on - strand, within Xcc-8004.3639.1at 3520.989 kb on - strand, within Xcc-8004.3639.1at 3520.989 kb on - strand, within Xcc-8004.3639.1at 3520.989 kb on - strand, within Xcc-8004.3639.1at 3520.989 kb on - strand, within Xcc-8004.3639.1at 3520.989 kb on - strand, within Xcc-8004.3639.1at 3521.159 kb on - strand, within Xcc-8004.3640.1at 3521.159 kb on - strand, within Xcc-8004.3640.1at 3521.159 kb on - strand, within Xcc-8004.3640.1at 3521.159 kb on - strand, within Xcc-8004.3640.1at 3521.211 kb on + strand, within Xcc-8004.3640.1at 3521.211 kb on + strand, within Xcc-8004.3640.1at 3521.211 kb on + strand, within Xcc-8004.3640.1at 3521.211 kb on + strand, within Xcc-8004.3640.1at 3521.211 kb on + strand, within Xcc-8004.3640.1at 3521.211 kb on + strand, within Xcc-8004.3640.1at 3521.211 kb on + strand, within Xcc-8004.3640.1at 3521.211 kb on + strand, within Xcc-8004.3640.1at 3521.212 kb on - strand, within Xcc-8004.3640.1at 3521.212 kb on - strand, within Xcc-8004.3640.1at 3521.212 kb on - strand, within Xcc-8004.3640.1at 3521.212 kb on - strand, within Xcc-8004.3640.1at 3521.212 kb on - strand, within Xcc-8004.3640.1at 3521.212 kb on - strand, within Xcc-8004.3640.1at 3521.212 kb on - strand, within Xcc-8004.3640.1at 3521.212 kb on - strand, within Xcc-8004.3640.1at 3521.212 kb on - strand, within Xcc-8004.3640.1at 3521.212 kb on - strand, within Xcc-8004.3640.1at 3521.212 kb on - strand, within Xcc-8004.3640.1at 3521.212 kb on - strand, within Xcc-8004.3640.1at 3521.212 kb on - strand, within Xcc-8004.3640.1at 3521.212 kb on - strand, within Xcc-8004.3640.1at 3521.212 kb on - strand, within Xcc-8004.3640.1at 3521.212 kb on - strand, within Xcc-8004.3640.1at 3521.252 kb on + strand, within Xcc-8004.3640.1at 3521.252 kb on + strand, within Xcc-8004.3640.1at 3521.253 kb on - strand, within Xcc-8004.3640.1at 3521.253 kb on - strand, within Xcc-8004.3640.1at 3521.253 kb on - strand, within Xcc-8004.3640.1at 3521.253 kb on - strand, within Xcc-8004.3640.1at 3521.253 kb on - strand, within Xcc-8004.3640.1at 3521.480 kb on + strandat 3521.480 kb on + strandat 3521.480 kb on + strandat 3521.481 kb on - strandat 3521.481 kb on - strandat 3521.481 kb on - strandat 3521.481 kb on - strandat 3521.732 kb on + strand, within Xcc-8004.3641.1at 3521.784 kb on - strandat 3521.784 kb on - strandat 3521.784 kb on - strandat 3521.784 kb on - strandat 3521.784 kb on - strandat 3521.784 kb on - strandat 3521.891 kb on + strandat 3521.891 kb on + strandat 3521.891 kb on + strandat 3521.891 kb on + strandat 3521.892 kb on - strandat 3521.892 kb on - strandat 3521.892 kb on - strandat 3521.892 kb on - strandat 3521.897 kb on + strandat 3521.898 kb on - strandat 3521.898 kb on - strandat 3521.907 kb on + strandat 3521.907 kb on + strandat 3521.908 kb on - strandat 3522.099 kb on + strand, within Xcc-8004.3642.1at 3522.100 kb on - strandat 3522.100 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes)
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3,519,630 + -2.0
3,519,630 + +1.6
3,519,630 + +1.3
3,519,695 + Xcc-8004.3637.1 0.15 +0.6
3,519,695 + Xcc-8004.3637.1 0.15 -0.6
3,519,695 + Xcc-8004.3637.1 0.15 -2.6
3,519,695 + Xcc-8004.3637.1 0.15 -0.8
3,519,695 + Xcc-8004.3637.1 0.15 -1.4
3,519,696 - Xcc-8004.3637.1 0.15 -1.8
3,519,696 - Xcc-8004.3637.1 0.15 +2.1
3,519,696 - Xcc-8004.3637.1 0.15 +1.6
3,519,696 - Xcc-8004.3637.1 0.15 +0.9
3,519,696 - Xcc-8004.3637.1 0.15 -2.0
3,519,696 - Xcc-8004.3637.1 0.15 -1.0
3,519,696 - Xcc-8004.3637.1 0.15 +1.9
3,519,696 - Xcc-8004.3637.1 0.15 -1.8
3,519,696 - Xcc-8004.3637.1 0.15 +0.6
3,519,696 - Xcc-8004.3637.1 0.15 +1.6
3,519,705 + Xcc-8004.3637.1 0.17 -0.4
3,519,754 + Xcc-8004.3637.1 0.26 -0.5
3,519,754 + Xcc-8004.3637.1 0.26 +1.9
3,519,754 + Xcc-8004.3637.1 0.26 -1.9
3,519,754 + Xcc-8004.3637.1 0.26 -1.0
3,519,754 + Xcc-8004.3637.1 0.26 -2.6
3,519,754 + Xcc-8004.3637.1 0.26 -1.2
3,519,755 - Xcc-8004.3637.1 0.26 +0.4
3,519,755 - Xcc-8004.3637.1 0.26 +1.8
3,519,755 - Xcc-8004.3637.1 0.26 +0.6
3,519,755 - Xcc-8004.3637.1 0.26 -2.4
3,519,755 - Xcc-8004.3637.1 0.26 +2.3
3,519,755 - Xcc-8004.3637.1 0.26 -1.0
3,519,755 - Xcc-8004.3637.1 0.26 +0.3
3,519,755 - Xcc-8004.3637.1 0.26 -2.0
3,519,755 - Xcc-8004.3637.1 0.26 +0.4
3,519,755 - Xcc-8004.3637.1 0.26 -0.6
3,519,755 - Xcc-8004.3637.1 0.26 -1.9
3,519,772 + Xcc-8004.3637.1 0.29 -1.6
3,519,773 - Xcc-8004.3637.1 0.29 -1.0
3,519,806 + Xcc-8004.3637.1 0.35 -1.0
3,519,806 + Xcc-8004.3637.1 0.35 -1.6
3,519,806 + Xcc-8004.3637.1 0.35 -2.7
3,519,807 - Xcc-8004.3637.1 0.36 -0.4
3,519,968 + Xcc-8004.3637.1 0.66 -2.1
3,519,968 + Xcc-8004.3637.1 0.66 +1.1
3,519,969 - Xcc-8004.3637.1 0.66 +1.0
3,519,969 - Xcc-8004.3637.1 0.66 -1.9
3,519,975 - Xcc-8004.3637.1 0.67 -0.1
3,520,081 - Xcc-8004.3637.1 0.87 -1.8
3,520,123 + -0.4
3,520,124 - -1.0
3,520,139 + -1.3
3,520,139 + -0.9
3,520,139 + -0.8
3,520,140 - +2.1
3,520,140 - -0.2
3,520,140 - +1.6
3,520,140 - -2.3
3,520,140 - -2.1
3,520,303 - -0.3
3,520,303 - -0.1
3,520,322 - -0.2
3,520,435 + -0.5
3,520,435 + -3.6
3,520,435 + +1.1
3,520,472 + -0.0
3,520,480 + -2.7
3,520,480 + +0.7
3,520,481 - +0.2
3,520,485 + +0.6
3,520,485 + -2.2
3,520,486 - +1.6
3,520,486 - -2.0
3,520,486 - -1.4
3,520,486 - -2.6
3,520,500 - +0.1
3,520,500 - +1.9
3,520,500 - -0.3
3,520,500 - +3.9
3,520,500 - -0.2
3,520,550 - +2.0
3,520,550 - +0.2
3,520,550 - -2.9
3,520,550 - +2.6
3,520,682 + Xcc-8004.3639.1 0.25 +0.3
3,520,682 + Xcc-8004.3639.1 0.25 -0.3
3,520,682 + Xcc-8004.3639.1 0.25 +2.6
3,520,683 - Xcc-8004.3639.1 0.25 +2.2
3,520,683 - Xcc-8004.3639.1 0.25 +1.1
3,520,752 + Xcc-8004.3639.1 0.37 -0.2
3,520,752 + Xcc-8004.3639.1 0.37 -0.3
3,520,753 - Xcc-8004.3639.1 0.37 +0.7
3,520,753 - Xcc-8004.3639.1 0.37 +0.3
3,520,753 - Xcc-8004.3639.1 0.37 +1.2
3,520,753 - Xcc-8004.3639.1 0.37 +0.7
3,520,988 + Xcc-8004.3639.1 0.79 -4.0
3,520,988 + Xcc-8004.3639.1 0.79 -1.3
3,520,988 + Xcc-8004.3639.1 0.79 -0.9
3,520,988 + Xcc-8004.3639.1 0.79 +1.2
3,520,989 - Xcc-8004.3639.1 0.79 +2.1
3,520,989 - Xcc-8004.3639.1 0.79 +0.6
3,520,989 - Xcc-8004.3639.1 0.79 +0.8
3,520,989 - Xcc-8004.3639.1 0.79 +1.7
3,520,989 - Xcc-8004.3639.1 0.79 -0.6
3,520,989 - Xcc-8004.3639.1 0.79 +0.8
3,521,159 - Xcc-8004.3640.1 0.14 -0.4
3,521,159 - Xcc-8004.3640.1 0.14 -0.4
3,521,159 - Xcc-8004.3640.1 0.14 -2.3
3,521,159 - Xcc-8004.3640.1 0.14 +0.3
3,521,211 + Xcc-8004.3640.1 0.34 -1.1
3,521,211 + Xcc-8004.3640.1 0.34 -2.0
3,521,211 + Xcc-8004.3640.1 0.34 -1.6
3,521,211 + Xcc-8004.3640.1 0.34 -1.0
3,521,211 + Xcc-8004.3640.1 0.34 +0.3
3,521,211 + Xcc-8004.3640.1 0.34 -0.3
3,521,211 + Xcc-8004.3640.1 0.34 +1.6
3,521,211 + Xcc-8004.3640.1 0.34 +0.9
3,521,212 - Xcc-8004.3640.1 0.34 -0.0
3,521,212 - Xcc-8004.3640.1 0.34 -1.4
3,521,212 - Xcc-8004.3640.1 0.34 -2.3
3,521,212 - Xcc-8004.3640.1 0.34 -1.1
3,521,212 - Xcc-8004.3640.1 0.34 -0.1
3,521,212 - Xcc-8004.3640.1 0.34 +0.9
3,521,212 - Xcc-8004.3640.1 0.34 -1.0
3,521,212 - Xcc-8004.3640.1 0.34 -1.8
3,521,212 - Xcc-8004.3640.1 0.34 -0.2
3,521,212 - Xcc-8004.3640.1 0.34 -2.1
3,521,212 - Xcc-8004.3640.1 0.34 +1.8
3,521,212 - Xcc-8004.3640.1 0.34 -1.1
3,521,212 - Xcc-8004.3640.1 0.34 +2.6
3,521,212 - Xcc-8004.3640.1 0.34 -0.2
3,521,212 - Xcc-8004.3640.1 0.34 +1.6
3,521,212 - Xcc-8004.3640.1 0.34 -1.3
3,521,252 + Xcc-8004.3640.1 0.49 -0.7
3,521,252 + Xcc-8004.3640.1 0.49 +0.7
3,521,253 - Xcc-8004.3640.1 0.49 +1.0
3,521,253 - Xcc-8004.3640.1 0.49 -3.5
3,521,253 - Xcc-8004.3640.1 0.49 +1.6
3,521,253 - Xcc-8004.3640.1 0.49 -0.3
3,521,253 - Xcc-8004.3640.1 0.49 +1.1
3,521,480 + +1.3
3,521,480 + -1.2
3,521,480 + -1.5
3,521,481 - +0.6
3,521,481 - -1.1
3,521,481 - -0.4
3,521,481 - -2.3
3,521,732 + Xcc-8004.3641.1 0.81 +0.6
3,521,784 - +1.1
3,521,784 - +0.1
3,521,784 - +1.9
3,521,784 - +1.6
3,521,784 - +1.6
3,521,784 - -0.8
3,521,891 + -2.3
3,521,891 + +5.7
3,521,891 + -2.0
3,521,891 + -0.3
3,521,892 - +1.9
3,521,892 - +1.0
3,521,892 - +0.2
3,521,892 - -0.9
3,521,897 + -1.2
3,521,898 - -0.7
3,521,898 - +0.6
3,521,907 + +2.6
3,521,907 + +1.2
3,521,908 - -1.4
3,522,099 + Xcc-8004.3642.1 0.89 -0.1
3,522,100 - -1.4
3,522,100 - -2.5

Or see this region's nucleotide sequence