Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3421.1 and Xcc-8004.3422.1 are separated by 270 nucleotides Xcc-8004.3422.1 and Xcc-8004.3423.1 are separated by 377 nucleotides
Xcc-8004.3421.1: Xcc-8004.3421.1 - Outer membrane component of multidrug efflux pump, at 3,313,614 to 3,315,017
Xcc-8004.3421.1
Xcc-8004.3422.1: Xcc-8004.3422.1 - FIG01211191: hypothetical protein, at 3,315,288 to 3,315,485
Xcc-8004.3422.1
Xcc-8004.3423.1: Xcc-8004.3423.1 - Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43), at 3,315,863 to 3,316,990
Xcc-8004.3423.1
Position (kb) 3315
3316 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3314.346 kb on + strand, within Xcc-8004.3421.1 at 3314.346 kb on + strand, within Xcc-8004.3421.1 at 3314.347 kb on - strand, within Xcc-8004.3421.1 at 3314.347 kb on - strand, within Xcc-8004.3421.1 at 3314.347 kb on - strand, within Xcc-8004.3421.1 at 3314.347 kb on - strand, within Xcc-8004.3421.1 at 3314.347 kb on - strand, within Xcc-8004.3421.1 at 3315.016 kb on - strand at 3315.192 kb on + strand at 3315.192 kb on + strand at 3315.333 kb on + strand, within Xcc-8004.3422.1 at 3315.333 kb on + strand, within Xcc-8004.3422.1 at 3315.333 kb on + strand, within Xcc-8004.3422.1 at 3315.334 kb on - strand, within Xcc-8004.3422.1 at 3315.399 kb on + strand, within Xcc-8004.3422.1 at 3315.399 kb on + strand, within Xcc-8004.3422.1 at 3315.399 kb on + strand, within Xcc-8004.3422.1 at 3315.399 kb on + strand, within Xcc-8004.3422.1 at 3315.399 kb on + strand, within Xcc-8004.3422.1 at 3315.399 kb on + strand, within Xcc-8004.3422.1 at 3315.400 kb on - strand, within Xcc-8004.3422.1 at 3315.400 kb on - strand, within Xcc-8004.3422.1 at 3315.400 kb on - strand, within Xcc-8004.3422.1 at 3315.400 kb on - strand, within Xcc-8004.3422.1 at 3315.400 kb on - strand, within Xcc-8004.3422.1 at 3315.400 kb on - strand, within Xcc-8004.3422.1 at 3315.400 kb on - strand, within Xcc-8004.3422.1 at 3315.483 kb on + strand at 3315.484 kb on - strand at 3315.484 kb on - strand at 3315.550 kb on + strand at 3315.550 kb on + strand at 3315.550 kb on + strand at 3315.648 kb on + strand at 3315.649 kb on - strand at 3315.649 kb on - strand at 3315.649 kb on - strand at 3315.652 kb on + strand at 3315.652 kb on + strand at 3315.652 kb on + strand at 3315.652 kb on + strand at 3315.652 kb on + strand at 3315.653 kb on - strand at 3315.653 kb on - strand at 3315.653 kb on - strand at 3315.653 kb on - strand at 3315.793 kb on + strand at 3315.793 kb on + strand at 3315.793 kb on + strand at 3315.793 kb on + strand at 3315.793 kb on + strand at 3315.793 kb on + strand at 3315.793 kb on + strand at 3315.794 kb on - strand at 3315.794 kb on - strand at 3315.794 kb on - strand at 3315.794 kb on - strand at 3315.794 kb on - strand at 3315.799 kb on + strand at 3315.799 kb on + strand at 3315.799 kb on + strand at 3315.799 kb on + strand at 3315.799 kb on + strand at 3315.799 kb on + strand at 3315.799 kb on + strand at 3315.799 kb on + strand at 3315.799 kb on + strand at 3315.799 kb on + strand at 3315.799 kb on + strand at 3315.799 kb on + strand at 3315.799 kb on + strand at 3315.799 kb on + strand at 3315.799 kb on + strand at 3315.799 kb on + strand at 3315.800 kb on - strand at 3315.800 kb on - strand at 3315.800 kb on - strand at 3315.800 kb on - strand at 3315.800 kb on - strand at 3315.800 kb on - strand at 3315.800 kb on - strand at 3315.800 kb on - strand at 3315.800 kb on - strand at 3315.800 kb on - strand at 3315.800 kb on - strand at 3315.800 kb on - strand at 3315.800 kb on - strand at 3315.800 kb on - strand at 3315.801 kb on + strand at 3315.832 kb on + strand at 3315.832 kb on + strand at 3315.832 kb on + strand at 3315.832 kb on + strand at 3315.832 kb on + strand at 3315.832 kb on + strand at 3315.832 kb on + strand at 3315.832 kb on + strand at 3315.832 kb on + strand at 3315.832 kb on + strand at 3315.833 kb on - strand at 3315.833 kb on - strand at 3315.833 kb on - strand at 3316.043 kb on + strand, within Xcc-8004.3423.1 at 3316.043 kb on + strand, within Xcc-8004.3423.1 at 3316.043 kb on + strand, within Xcc-8004.3423.1 at 3316.043 kb on + strand, within Xcc-8004.3423.1 at 3316.043 kb on + strand, within Xcc-8004.3423.1 at 3316.043 kb on + strand, within Xcc-8004.3423.1 at 3316.043 kb on + strand, within Xcc-8004.3423.1 at 3316.043 kb on + strand, within Xcc-8004.3423.1 at 3316.043 kb on + strand, within Xcc-8004.3423.1 at 3316.043 kb on + strand, within Xcc-8004.3423.1 at 3316.044 kb on - strand, within Xcc-8004.3423.1 at 3316.044 kb on - strand, within Xcc-8004.3423.1 at 3316.044 kb on - strand, within Xcc-8004.3423.1 at 3316.089 kb on + strand, within Xcc-8004.3423.1 at 3316.090 kb on - strand, within Xcc-8004.3423.1 at 3316.090 kb on - strand, within Xcc-8004.3423.1 at 3316.090 kb on - strand, within Xcc-8004.3423.1 at 3316.090 kb on - strand, within Xcc-8004.3423.1 at 3316.090 kb on - strand, within Xcc-8004.3423.1 at 3316.090 kb on - strand, within Xcc-8004.3423.1 at 3316.090 kb on - strand, within Xcc-8004.3423.1 at 3316.131 kb on + strand, within Xcc-8004.3423.1 at 3316.132 kb on - strand, within Xcc-8004.3423.1 at 3316.146 kb on + strand, within Xcc-8004.3423.1 at 3316.146 kb on + strand, within Xcc-8004.3423.1 at 3316.146 kb on + strand, within Xcc-8004.3423.1 at 3316.146 kb on + strand, within Xcc-8004.3423.1 at 3316.146 kb on + strand, within Xcc-8004.3423.1 at 3316.146 kb on + strand, within Xcc-8004.3423.1 at 3316.146 kb on + strand, within Xcc-8004.3423.1 at 3316.146 kb on + strand, within Xcc-8004.3423.1 at 3316.146 kb on + strand, within Xcc-8004.3423.1 at 3316.146 kb on + strand, within Xcc-8004.3423.1 at 3316.146 kb on + strand, within Xcc-8004.3423.1 at 3316.146 kb on + strand, within Xcc-8004.3423.1 at 3316.146 kb on + strand, within Xcc-8004.3423.1 at 3316.146 kb on + strand, within Xcc-8004.3423.1 at 3316.146 kb on + strand, within Xcc-8004.3423.1 at 3316.147 kb on - strand, within Xcc-8004.3423.1 at 3316.147 kb on - strand, within Xcc-8004.3423.1 at 3316.147 kb on - strand, within Xcc-8004.3423.1 at 3316.147 kb on - strand, within Xcc-8004.3423.1 at 3316.147 kb on - strand, within Xcc-8004.3423.1 at 3316.147 kb on - strand, within Xcc-8004.3423.1 at 3316.147 kb on - strand, within Xcc-8004.3423.1 at 3316.147 kb on - strand, within Xcc-8004.3423.1 at 3316.147 kb on - strand, within Xcc-8004.3423.1 at 3316.147 kb on - strand, within Xcc-8004.3423.1 at 3316.152 kb on + strand, within Xcc-8004.3423.1 at 3316.152 kb on + strand, within Xcc-8004.3423.1 at 3316.152 kb on + strand, within Xcc-8004.3423.1 at 3316.152 kb on + strand, within Xcc-8004.3423.1 at 3316.152 kb on + strand, within Xcc-8004.3423.1 at 3316.152 kb on + strand, within Xcc-8004.3423.1 at 3316.152 kb on + strand, within Xcc-8004.3423.1 at 3316.152 kb on + strand, within Xcc-8004.3423.1 at 3316.152 kb on + strand, within Xcc-8004.3423.1 at 3316.153 kb on - strand, within Xcc-8004.3423.1 at 3316.153 kb on - strand, within Xcc-8004.3423.1 at 3316.153 kb on - strand, within Xcc-8004.3423.1 at 3316.153 kb on - strand, within Xcc-8004.3423.1 at 3316.153 kb on - strand, within Xcc-8004.3423.1 at 3316.153 kb on - strand, within Xcc-8004.3423.1 at 3316.153 kb on - strand, within Xcc-8004.3423.1 at 3316.153 kb on - strand, within Xcc-8004.3423.1 at 3316.153 kb on - strand, within Xcc-8004.3423.1 at 3316.153 kb on - strand, within Xcc-8004.3423.1 at 3316.153 kb on - strand, within Xcc-8004.3423.1 at 3316.153 kb on - strand, within Xcc-8004.3423.1 at 3316.153 kb on - strand, within Xcc-8004.3423.1 at 3316.308 kb on + strand, within Xcc-8004.3423.1 at 3316.308 kb on + strand, within Xcc-8004.3423.1 at 3316.308 kb on + strand, within Xcc-8004.3423.1 at 3316.308 kb on + strand, within Xcc-8004.3423.1 at 3316.308 kb on + strand, within Xcc-8004.3423.1 at 3316.308 kb on + strand, within Xcc-8004.3423.1 at 3316.308 kb on + strand, within Xcc-8004.3423.1 at 3316.308 kb on + strand, within Xcc-8004.3423.1 at 3316.309 kb on - strand, within Xcc-8004.3423.1 at 3316.309 kb on - strand, within Xcc-8004.3423.1 at 3316.309 kb on - strand, within Xcc-8004.3423.1 at 3316.309 kb on - strand, within Xcc-8004.3423.1 at 3316.309 kb on - strand, within Xcc-8004.3423.1 at 3316.335 kb on + strand, within Xcc-8004.3423.1 at 3316.335 kb on + strand, within Xcc-8004.3423.1 at 3316.335 kb on + strand, within Xcc-8004.3423.1 at 3316.336 kb on - strand, within Xcc-8004.3423.1 at 3316.336 kb on - strand, within Xcc-8004.3423.1 at 3316.336 kb on - strand, within Xcc-8004.3423.1 at 3316.443 kb on + strand, within Xcc-8004.3423.1 at 3316.443 kb on + strand, within Xcc-8004.3423.1 at 3316.443 kb on + strand, within Xcc-8004.3423.1 at 3316.443 kb on + strand, within Xcc-8004.3423.1 at 3316.444 kb on - strand, within Xcc-8004.3423.1 at 3316.444 kb on - strand, within Xcc-8004.3423.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes) remove 3,314,346 + Xcc-8004.3421.1 0.52 -1.1 3,314,346 + Xcc-8004.3421.1 0.52 -1.3 3,314,347 - Xcc-8004.3421.1 0.52 -0.9 3,314,347 - Xcc-8004.3421.1 0.52 -1.6 3,314,347 - Xcc-8004.3421.1 0.52 +2.0 3,314,347 - Xcc-8004.3421.1 0.52 +3.1 3,314,347 - Xcc-8004.3421.1 0.52 -0.1 3,315,016 - +2.0 3,315,192 + +3.3 3,315,192 + +0.1 3,315,333 + Xcc-8004.3422.1 0.23 +1.3 3,315,333 + Xcc-8004.3422.1 0.23 -0.6 3,315,333 + Xcc-8004.3422.1 0.23 +1.0 3,315,334 - Xcc-8004.3422.1 0.23 +0.4 3,315,399 + Xcc-8004.3422.1 0.56 +0.0 3,315,399 + Xcc-8004.3422.1 0.56 +0.1 3,315,399 + Xcc-8004.3422.1 0.56 -0.6 3,315,399 + Xcc-8004.3422.1 0.56 +1.1 3,315,399 + Xcc-8004.3422.1 0.56 -1.4 3,315,399 + Xcc-8004.3422.1 0.56 +0.5 3,315,400 - Xcc-8004.3422.1 0.57 +0.4 3,315,400 - Xcc-8004.3422.1 0.57 +1.3 3,315,400 - Xcc-8004.3422.1 0.57 -0.2 3,315,400 - Xcc-8004.3422.1 0.57 +1.1 3,315,400 - Xcc-8004.3422.1 0.57 -1.3 3,315,400 - Xcc-8004.3422.1 0.57 -2.3 3,315,400 - Xcc-8004.3422.1 0.57 -1.2 3,315,483 + -0.1 3,315,484 - -2.2 3,315,484 - +0.8 3,315,550 + -0.3 3,315,550 + -1.1 3,315,550 + +0.9 3,315,648 + -1.7 3,315,649 - -2.1 3,315,649 - +0.4 3,315,649 - +0.1 3,315,652 + +0.1 3,315,652 + +1.1 3,315,652 + +0.2 3,315,652 + +2.8 3,315,652 + -1.2 3,315,653 - +0.8 3,315,653 - -0.1 3,315,653 - -3.0 3,315,653 - -0.5 3,315,793 + +0.7 3,315,793 + -0.6 3,315,793 + -1.3 3,315,793 + +0.5 3,315,793 + +0.8 3,315,793 + +1.9 3,315,793 + -1.5 3,315,794 - +0.3 3,315,794 - -3.1 3,315,794 - -1.1 3,315,794 - -2.1 3,315,794 - +1.4 3,315,799 + -1.7 3,315,799 + -1.1 3,315,799 + +1.3 3,315,799 + +2.5 3,315,799 + -3.0 3,315,799 + +0.2 3,315,799 + -0.6 3,315,799 + -1.1 3,315,799 + +0.3 3,315,799 + +0.5 3,315,799 + -1.3 3,315,799 + +0.4 3,315,799 + +0.9 3,315,799 + -1.9 3,315,799 + +0.2 3,315,799 + +0.2 3,315,800 - +0.9 3,315,800 - +0.4 3,315,800 - -2.9 3,315,800 - -2.3 3,315,800 - +2.1 3,315,800 - +2.0 3,315,800 - -0.8 3,315,800 - +1.8 3,315,800 - +0.6 3,315,800 - -0.3 3,315,800 - -2.0 3,315,800 - -0.6 3,315,800 - +0.4 3,315,800 - +2.9 3,315,801 + -0.2 3,315,832 + -2.5 3,315,832 + -0.8 3,315,832 + -1.9 3,315,832 + -2.4 3,315,832 + +1.5 3,315,832 + +1.5 3,315,832 + +1.0 3,315,832 + -1.1 3,315,832 + +0.8 3,315,832 + +1.2 3,315,833 - +1.2 3,315,833 - -1.1 3,315,833 - +2.5 3,316,043 + Xcc-8004.3423.1 0.16 -0.2 3,316,043 + Xcc-8004.3423.1 0.16 -0.1 3,316,043 + Xcc-8004.3423.1 0.16 -1.6 3,316,043 + Xcc-8004.3423.1 0.16 -0.4 3,316,043 + Xcc-8004.3423.1 0.16 -1.9 3,316,043 + Xcc-8004.3423.1 0.16 -0.9 3,316,043 + Xcc-8004.3423.1 0.16 -0.8 3,316,043 + Xcc-8004.3423.1 0.16 +2.0 3,316,043 + Xcc-8004.3423.1 0.16 -0.5 3,316,043 + Xcc-8004.3423.1 0.16 +0.5 3,316,044 - Xcc-8004.3423.1 0.16 +2.5 3,316,044 - Xcc-8004.3423.1 0.16 -0.9 3,316,044 - Xcc-8004.3423.1 0.16 +3.3 3,316,089 + Xcc-8004.3423.1 0.20 -1.3 3,316,090 - Xcc-8004.3423.1 0.20 +1.8 3,316,090 - Xcc-8004.3423.1 0.20 +0.7 3,316,090 - Xcc-8004.3423.1 0.20 -1.2 3,316,090 - Xcc-8004.3423.1 0.20 +0.4 3,316,090 - Xcc-8004.3423.1 0.20 -2.6 3,316,090 - Xcc-8004.3423.1 0.20 +0.3 3,316,090 - Xcc-8004.3423.1 0.20 -0.6 3,316,131 + Xcc-8004.3423.1 0.24 -2.3 3,316,132 - Xcc-8004.3423.1 0.24 +1.1 3,316,146 + Xcc-8004.3423.1 0.25 -0.1 3,316,146 + Xcc-8004.3423.1 0.25 +1.3 3,316,146 + Xcc-8004.3423.1 0.25 +0.5 3,316,146 + Xcc-8004.3423.1 0.25 -2.2 3,316,146 + Xcc-8004.3423.1 0.25 +1.0 3,316,146 + Xcc-8004.3423.1 0.25 +0.3 3,316,146 + Xcc-8004.3423.1 0.25 +0.5 3,316,146 + Xcc-8004.3423.1 0.25 -0.8 3,316,146 + Xcc-8004.3423.1 0.25 +0.6 3,316,146 + Xcc-8004.3423.1 0.25 -1.6 3,316,146 + Xcc-8004.3423.1 0.25 +0.5 3,316,146 + Xcc-8004.3423.1 0.25 +2.1 3,316,146 + Xcc-8004.3423.1 0.25 +2.1 3,316,146 + Xcc-8004.3423.1 0.25 +1.1 3,316,146 + Xcc-8004.3423.1 0.25 +2.2 3,316,147 - Xcc-8004.3423.1 0.25 -2.1 3,316,147 - Xcc-8004.3423.1 0.25 +0.2 3,316,147 - Xcc-8004.3423.1 0.25 +0.0 3,316,147 - Xcc-8004.3423.1 0.25 -0.0 3,316,147 - Xcc-8004.3423.1 0.25 +0.1 3,316,147 - Xcc-8004.3423.1 0.25 +2.3 3,316,147 - Xcc-8004.3423.1 0.25 +2.0 3,316,147 - Xcc-8004.3423.1 0.25 -0.2 3,316,147 - Xcc-8004.3423.1 0.25 -0.8 3,316,147 - Xcc-8004.3423.1 0.25 +1.9 3,316,152 + Xcc-8004.3423.1 0.26 -3.3 3,316,152 + Xcc-8004.3423.1 0.26 -1.0 3,316,152 + Xcc-8004.3423.1 0.26 +3.1 3,316,152 + Xcc-8004.3423.1 0.26 -0.7 3,316,152 + Xcc-8004.3423.1 0.26 -0.0 3,316,152 + Xcc-8004.3423.1 0.26 +1.8 3,316,152 + Xcc-8004.3423.1 0.26 -1.9 3,316,152 + Xcc-8004.3423.1 0.26 -0.0 3,316,152 + Xcc-8004.3423.1 0.26 +0.1 3,316,153 - Xcc-8004.3423.1 0.26 +0.4 3,316,153 - Xcc-8004.3423.1 0.26 -1.0 3,316,153 - Xcc-8004.3423.1 0.26 -1.5 3,316,153 - Xcc-8004.3423.1 0.26 +0.4 3,316,153 - Xcc-8004.3423.1 0.26 +1.5 3,316,153 - Xcc-8004.3423.1 0.26 -1.1 3,316,153 - Xcc-8004.3423.1 0.26 -0.8 3,316,153 - Xcc-8004.3423.1 0.26 -1.4 3,316,153 - Xcc-8004.3423.1 0.26 +1.7 3,316,153 - Xcc-8004.3423.1 0.26 -0.8 3,316,153 - Xcc-8004.3423.1 0.26 +0.7 3,316,153 - Xcc-8004.3423.1 0.26 -1.3 3,316,153 - Xcc-8004.3423.1 0.26 +0.5 3,316,308 + Xcc-8004.3423.1 0.39 -0.6 3,316,308 + Xcc-8004.3423.1 0.39 +0.6 3,316,308 + Xcc-8004.3423.1 0.39 -0.3 3,316,308 + Xcc-8004.3423.1 0.39 -0.3 3,316,308 + Xcc-8004.3423.1 0.39 -1.0 3,316,308 + Xcc-8004.3423.1 0.39 +0.2 3,316,308 + Xcc-8004.3423.1 0.39 +0.7 3,316,308 + Xcc-8004.3423.1 0.39 -1.0 3,316,309 - Xcc-8004.3423.1 0.40 -0.0 3,316,309 - Xcc-8004.3423.1 0.40 +1.5 3,316,309 - Xcc-8004.3423.1 0.40 +0.3 3,316,309 - Xcc-8004.3423.1 0.40 +0.4 3,316,309 - Xcc-8004.3423.1 0.40 +1.0 3,316,335 + Xcc-8004.3423.1 0.42 -1.8 3,316,335 + Xcc-8004.3423.1 0.42 -0.0 3,316,335 + Xcc-8004.3423.1 0.42 -1.6 3,316,336 - Xcc-8004.3423.1 0.42 -0.7 3,316,336 - Xcc-8004.3423.1 0.42 +0.8 3,316,336 - Xcc-8004.3423.1 0.42 +0.5 3,316,443 + Xcc-8004.3423.1 0.51 -1.1 3,316,443 + Xcc-8004.3423.1 0.51 -0.5 3,316,443 + Xcc-8004.3423.1 0.51 -0.5 3,316,443 + Xcc-8004.3423.1 0.51 -1.3 3,316,444 - Xcc-8004.3423.1 0.52 -0.0 3,316,444 - Xcc-8004.3423.1 0.52 +1.2
Or see this region's nucleotide sequence