Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3238.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylemvessel barcodes Location 3 6 dpi (25 plantes)
3,146,957	+		Xcc-8004.3236.1	0.81	+0.2
3,146,958	-		Xcc-8004.3236.1	0.81	-0.6
3,146,958	-		Xcc-8004.3236.1	0.81	-1.6
3,146,958	-		Xcc-8004.3236.1	0.81	+2.0
3,146,992	+		Xcc-8004.3236.1	0.82	-1.1
3,146,992	+		Xcc-8004.3236.1	0.82	-1.5
3,146,992	+		Xcc-8004.3236.1	0.82	+0.3
3,146,992	+		Xcc-8004.3236.1	0.82	-0.7
3,146,992	+		Xcc-8004.3236.1	0.82	+0.5
3,146,992	+		Xcc-8004.3236.1	0.82	-0.4
3,146,992	+		Xcc-8004.3236.1	0.82	+2.0
3,146,992	+		Xcc-8004.3236.1	0.82	+1.2
3,146,992	+		Xcc-8004.3236.1	0.82	+0.9
3,146,992	+		Xcc-8004.3236.1	0.82	-0.6
3,146,993	-		Xcc-8004.3236.1	0.82	+1.7
3,146,993	-		Xcc-8004.3236.1	0.82	+0.2
3,146,993	-		Xcc-8004.3236.1	0.82	+1.2
3,147,131	-		Xcc-8004.3236.1	0.86	+0.4
3,147,140	-		Xcc-8004.3236.1	0.86	+1.6
3,147,145	+		Xcc-8004.3236.1	0.86	-0.6
3,147,267	+		Xcc-8004.3236.1	0.89	+2.9
3,147,267	+		Xcc-8004.3236.1	0.89	+1.4
3,147,268	-		Xcc-8004.3236.1	0.89	+0.4
3,147,268	-		Xcc-8004.3236.1	0.89	-3.6
3,147,268	-		Xcc-8004.3236.1	0.89	+0.4
3,147,268	-		Xcc-8004.3236.1	0.89	+0.4
3,147,268	-		Xcc-8004.3236.1	0.89	-1.6
3,147,268	-		Xcc-8004.3236.1	0.89	-1.7
3,147,268	-		Xcc-8004.3236.1	0.89	-0.6
3,147,268	-		Xcc-8004.3236.1	0.89	+0.6
3,147,337	+				+3.1
3,147,337	+				+1.2
3,147,338	-				+2.8
3,147,338	-				+0.4
3,147,338	-				+0.7
3,147,338	-				+0.8
3,147,362	+				+0.3
3,147,363	-				-0.3
3,147,363	-				+3.5
3,147,363	-				+3.1
3,147,368	+				+1.4
3,147,368	+				-1.1
3,147,368	+				-1.8
3,147,369	-				+0.8
3,147,386	+				+0.3
3,147,386	+				+0.5
3,147,386	+				+0.3
3,147,387	-				-2.7
3,147,387	-				+1.1
3,147,465	+				-0.6
3,147,466	-				+0.1
3,147,466	-				+0.4
3,147,495	+				-0.1
3,147,496	-				-0.1
3,147,496	-				-2.1
3,147,496	-				+0.1
3,147,496	-				-1.1
3,147,502	-				+1.0
3,147,502	-				+1.4
3,147,502	-				+2.4
3,147,502	-				-0.0
3,147,508	+				-1.3
3,147,508	+				+1.4
3,147,509	-				+0.3
3,147,523	+				-0.7
3,147,523	+				+1.4
3,147,523	+				-0.9
3,147,523	+				-2.9
3,147,523	+				-1.9
3,147,524	-				+0.0
3,147,524	-				-2.5
3,147,524	-				-1.1
3,147,693	+				-0.7
3,147,964	+		Xcc-8004.3238.1	0.35	+1.1
3,148,354	+				-2.6
3,148,354	+				+0.4
3,148,354	+				+0.9
3,148,354	+				+4.7
3,148,354	+				-1.9
3,148,410	+				+0.0
3,148,410	+				+1.1
3,148,410	+				+0.8
3,148,410	+				-1.0
3,148,410	+				+0.6
3,148,410	+				+1.4
3,148,411	-				-0.1
3,148,411	-				+1.0
3,148,411	-				-2.0
3,148,411	-				-1.9
3,148,411	-				+0.5
3,148,411	-				+2.1
3,148,439	+				-2.3
3,148,439	+				-2.1
3,148,439	+				+0.4
3,148,439	+				-1.9
3,148,439	+				+2.0
3,148,440	-				-1.1
3,148,440	-				-1.8
3,148,440	-				-1.6
3,148,440	-				-0.6
3,148,440	-				-1.9
3,148,503	+				-1.0
3,148,503	+				+0.0
3,148,504	-				-1.4
3,148,504	-				+1.3
3,148,504	-				-0.3
3,148,504	-				-0.9
3,148,504	-				-0.2
3,148,523	+				-0.6
3,148,523	+				+0.2
3,148,524	-				+0.6
3,148,524	-				+1.1
3,148,524	-				+0.3
3,148,524	-				+1.2
3,148,524	-				-2.0
3,148,524	-				-0.3
3,148,558	+				+1.0
3,148,558	+				-1.1
3,148,558	+				-1.7
3,148,559	-				+0.1
3,148,559	-				-1.5
3,148,559	-				-0.6
3,148,559	-				+1.8
3,148,559	-				-1.6
3,148,567	-				-1.7
3,148,584	+				-1.9
3,148,585	-				-1.4
3,148,606	+				+2.4
3,148,606	+				-0.9
3,148,606	+				+0.7
3,148,606	+				-2.6
3,148,606	+				-3.1
3,148,607	-				-1.5
3,148,607	-				+0.4
3,148,607	-				+2.0
3,148,645	+				-2.6
3,148,645	+				-0.4
3,148,645	+				-0.0
3,148,645	+				-0.0
3,148,646	-				-1.1
3,148,694	+				+0.1
3,148,694	+				+0.1
3,148,694	+				-0.5
3,148,694	+				+0.7
3,148,694	+				+0.2
3,148,694	+				+0.4
3,148,694	+				-0.9
3,148,694	+				+0.4
3,148,694	+				+1.6
3,148,694	+				-1.0
3,148,694	+				+2.1
3,148,695	-				-0.5
3,148,695	-				+1.3
3,148,695	-				+1.9
3,148,695	-				+0.4
3,148,695	-				-1.9
3,148,695	-				+0.5
3,148,695	-				-2.9
3,148,695	-				+1.9
3,148,695	-				+0.5
3,148,695	-				+0.6
3,148,695	-				+0.4
3,148,717	-				+0.1
3,148,733	+				+0.4
3,148,733	+				-0.0
3,148,733	+				+0.4
3,148,733	+				-1.0
3,148,738	+				-0.0
3,148,738	+				+1.8
3,148,738	+				-1.5
3,148,739	-				-2.6
3,148,739	-				-0.7
3,148,763	+				-2.6
3,148,763	+				-0.8
3,148,763	+				+0.4
3,148,763	+				+0.1
3,148,763	+				+0.2
3,148,763	+				-1.4
3,148,763	+				-1.6
3,148,764	-				-0.3
3,148,764	-				+0.0
3,148,764	-				-1.4
3,148,764	-				-0.8
3,148,764	-				+1.3
3,148,764	-				-1.1
3,148,764	-				+0.3
3,148,764	-				-0.1
3,148,764	-				-0.5
3,148,764	-				+1.2
3,148,764	-				-2.0
3,148,770	+				+1.2
3,148,770	+				+0.7
3,148,770	+				+0.4
3,148,770	+				-1.6
3,148,770	+				-0.7
3,148,770	+				+1.5
3,148,770	+				+3.1
3,148,770	+				+0.8
3,148,770	+				+0.3
3,148,770	+				-1.9
3,148,770	+				+4.2
3,148,771	-				+0.9
3,148,771	-				+1.7
3,148,771	-				-2.3
3,148,771	-				-0.3
3,148,771	-				+2.2
3,148,771	-				-1.0
3,148,771	-				-1.5
3,148,771	-				+1.4
3,148,771	-				+0.4
3,148,771	-				-1.6
3,148,771	-				-1.5
3,148,771	-				+1.0
3,148,771	-				-1.6
3,148,771	-				-0.4
3,148,771	-				+0.3
3,148,771	-				-1.7
3,148,771	-				-0.6
3,148,771	-				+0.0
3,148,771	-				+1.2
3,148,771	-				-3.3
3,148,771	-				+0.8
3,148,771	-				-0.8
3,148,774	+				+0.2
3,148,774	+				-1.0
3,148,774	+				-0.1
3,148,774	+				+1.1
3,148,774	+				-1.4
3,148,774	+				+0.6
3,148,774	+				+0.3
3,148,774	+				-1.7
3,148,775	-				-1.0
3,148,775	-				+1.0
3,148,775	-				+1.3
3,148,775	-				+0.7
3,148,775	-				-1.2
3,148,775	-				+0.7
3,148,775	-				-0.2
3,148,775	-				-1.9
3,148,775	-				+0.4
3,148,775	-				+2.1
3,148,775	-				+0.1
3,148,780	+				-2.6
3,148,780	+				+1.2
3,148,780	+				-0.6
3,148,780	+				+0.9
3,148,780	+				-1.4
3,148,780	+				+0.0
3,148,780	+				-1.6
3,148,780	+				+1.4
3,148,781	-				-0.3
3,148,781	-				-4.2
3,148,781	-				-0.9
3,148,781	-				-0.1
3,148,781	-				-2.8
3,148,781	-				-0.8
3,148,781	-				-1.7
3,148,781	-				+0.2
3,148,781	-				+0.5
3,148,781	-				-1.4
3,148,785	+				+0.4
3,148,785	+				+0.1
3,148,785	+				+0.9
3,148,785	+				+0.2
3,148,785	+				-2.7
3,148,786	-				-4.2
3,148,818	+				-1.7
3,148,818	+				-1.6
3,148,818	+				-0.4
3,148,818	+				+1.4
3,148,818	+				-2.3
3,148,818	+				-0.9
3,148,818	+				-0.4
3,148,819	-				+0.4
3,148,819	-				-0.3
3,148,819	-				+0.4
3,148,819	-				-1.4
3,148,875	+				-0.5
3,148,911	+				-0.9
3,148,911	+				-1.0
3,148,912	-				-1.6
3,148,912	-				+0.5
3,148,912	-				-3.9
3,148,912	-				+1.1
3,148,920	+				-1.4
3,148,920	+				+2.2
3,148,920	+				+1.4
3,148,920	+				-0.9
3,148,920	+				+0.3
3,148,920	+				-0.6
3,148,920	+				+0.4
3,148,921	-				+2.0
3,148,921	-				-0.1
3,148,928	+				-2.0
3,148,928	+				-0.5
3,148,929	-				+0.6
3,148,929	-				+1.1
3,148,929	-				+2.5
3,148,966	+		Xcc-8004.3239.1	0.19	+0.2
3,148,966	+		Xcc-8004.3239.1	0.19	+0.4
3,148,966	+		Xcc-8004.3239.1	0.19	+2.1
3,148,967	-		Xcc-8004.3239.1	0.20	+0.5
3,148,967	-		Xcc-8004.3239.1	0.20	-0.9
3,148,967	-		Xcc-8004.3239.1	0.20	+0.5
3,149,010	+		Xcc-8004.3239.1	0.35	-0.1
3,149,010	+		Xcc-8004.3239.1	0.35	-0.6
3,149,010	+		Xcc-8004.3239.1	0.35	+2.1
3,149,010	+		Xcc-8004.3239.1	0.35	+0.7
3,149,010	+		Xcc-8004.3239.1	0.35	+0.0
3,149,010	+		Xcc-8004.3239.1	0.35	-2.5
3,149,011	-		Xcc-8004.3239.1	0.35	-0.1
3,149,011	-		Xcc-8004.3239.1	0.35	-0.8
3,149,011	-		Xcc-8004.3239.1	0.35	+2.6
3,149,120	+		Xcc-8004.3239.1	0.74	+1.4
3,149,120	+		Xcc-8004.3239.1	0.74	+0.6
3,149,120	+		Xcc-8004.3239.1	0.74	-0.6
3,149,120	+		Xcc-8004.3239.1	0.74	-1.7
3,149,120	+		Xcc-8004.3239.1	0.74	-2.2
3,149,120	+		Xcc-8004.3239.1	0.74	-0.0
3,149,120	+		Xcc-8004.3239.1	0.74	-0.8
3,149,120	+		Xcc-8004.3239.1	0.74	+1.0
3,149,120	+		Xcc-8004.3239.1	0.74	+0.5
3,149,120	+		Xcc-8004.3239.1	0.74	-1.8
3,149,120	+		Xcc-8004.3239.1	0.74	+3.3
3,149,121	-		Xcc-8004.3239.1	0.74	+1.4
3,149,121	-		Xcc-8004.3239.1	0.74	-1.8
3,149,121	-		Xcc-8004.3239.1	0.74	-0.3
3,149,121	-		Xcc-8004.3239.1	0.74	-0.9
3,149,121	-		Xcc-8004.3239.1	0.74	+0.4
3,149,121	-		Xcc-8004.3239.1	0.74	-1.2
3,149,121	-		Xcc-8004.3239.1	0.74	+1.7
3,149,121	-		Xcc-8004.3239.1	0.74	+1.4
3,149,121	-		Xcc-8004.3239.1	0.74	-2.0
3,149,121	-		Xcc-8004.3239.1	0.74	-3.0
3,149,121	-		Xcc-8004.3239.1	0.74	+0.0
3,149,121	-		Xcc-8004.3239.1	0.74	-0.6
3,149,121	-		Xcc-8004.3239.1	0.74	+0.2
3,149,121	-		Xcc-8004.3239.1	0.74	+1.7
3,149,130	+		Xcc-8004.3239.1	0.77	+0.4
3,149,130	+		Xcc-8004.3239.1	0.77	-1.7
3,149,130	+		Xcc-8004.3239.1	0.77	-1.5
3,149,130	+		Xcc-8004.3239.1	0.77	-0.0
3,149,130	+		Xcc-8004.3239.1	0.77	-1.7
3,149,130	+		Xcc-8004.3239.1	0.77	-0.4
3,149,130	+		Xcc-8004.3239.1	0.77	-2.1
3,149,131	-		Xcc-8004.3239.1	0.78	-1.7
3,149,131	-		Xcc-8004.3239.1	0.78	-2.1
3,149,131	-		Xcc-8004.3239.1	0.78	+1.1
3,149,131	-		Xcc-8004.3239.1	0.78	-1.4
3,149,131	-		Xcc-8004.3239.1	0.78	-1.6
3,149,131	-		Xcc-8004.3239.1	0.78	+0.4
3,149,140	+		Xcc-8004.3239.1	0.81	-0.2
3,149,140	+		Xcc-8004.3239.1	0.81	-2.0
3,149,140	+		Xcc-8004.3239.1	0.81	-2.0
3,149,140	+		Xcc-8004.3239.1	0.81	+0.8
3,149,140	+		Xcc-8004.3239.1	0.81	+0.3
3,149,140	+		Xcc-8004.3239.1	0.81	-1.6
3,149,140	+		Xcc-8004.3239.1	0.81	+1.0
3,149,141	-		Xcc-8004.3239.1	0.81	+0.6
3,149,141	-		Xcc-8004.3239.1	0.81	+2.7
3,149,141	-		Xcc-8004.3239.1	0.81	+2.3
3,149,141	-		Xcc-8004.3239.1	0.81	+2.5
3,149,141	-		Xcc-8004.3239.1	0.81	-1.0
3,149,141	-		Xcc-8004.3239.1	0.81	-0.4
3,149,141	-		Xcc-8004.3239.1	0.81	+2.9
3,149,141	-		Xcc-8004.3239.1	0.81	+0.1
3,149,141	-		Xcc-8004.3239.1	0.81	-0.1
3,149,152	+		Xcc-8004.3239.1	0.85	-2.6
3,149,153	-		Xcc-8004.3239.1	0.85	-0.6
3,149,179	-				+0.9