Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3157.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3156.1 and Xcc-8004.3157.1 overlap by 17 nucleotidesXcc-8004.3157.1 and Xcc-8004.3158.1 are separated by 31 nucleotidesXcc-8004.3158.1 and Xcc-8004.3159.1 are separated by 60 nucleotides Xcc-8004.3156.1: Xcc-8004.3156.1 - Magnesium and cobalt efflux protein CorC, at 3,073,965 to 3,075,275 Xcc-8004.3156.1 Xcc-8004.3157.1: Xcc-8004.3157.1 - ExoD protein, at 3,075,259 to 3,075,933 Xcc-8004.3157.1 Xcc-8004.3158.1: Xcc-8004.3158.1 - Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5), at 3,075,965 to 3,076,465 Xcc-8004.3158.1 Xcc-8004.3159.1: Xcc-8004.3159.1 - Luciferase-like, at 3,076,526 to 3,077,527 Xcc-8004.3159.1 Position (kb) 3075 3076Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3074.901 kb on + strand, within Xcc-8004.3156.1at 3074.901 kb on + strand, within Xcc-8004.3156.1at 3074.901 kb on + strand, within Xcc-8004.3156.1at 3074.902 kb on - strand, within Xcc-8004.3156.1at 3075.102 kb on + strand, within Xcc-8004.3156.1at 3075.129 kb on + strand, within Xcc-8004.3156.1at 3075.129 kb on + strand, within Xcc-8004.3156.1at 3075.130 kb on - strand, within Xcc-8004.3156.1at 3075.130 kb on - strand, within Xcc-8004.3156.1at 3075.130 kb on - strand, within Xcc-8004.3156.1at 3075.130 kb on - strand, within Xcc-8004.3156.1at 3075.130 kb on - strand, within Xcc-8004.3156.1at 3075.130 kb on - strand, within Xcc-8004.3156.1at 3075.130 kb on - strand, within Xcc-8004.3156.1at 3075.130 kb on - strand, within Xcc-8004.3156.1at 3075.132 kb on + strand, within Xcc-8004.3156.1at 3075.132 kb on + strand, within Xcc-8004.3156.1at 3075.132 kb on + strand, within Xcc-8004.3156.1at 3075.132 kb on + strand, within Xcc-8004.3156.1at 3075.133 kb on - strand, within Xcc-8004.3156.1at 3075.133 kb on - strand, within Xcc-8004.3156.1at 3075.482 kb on + strand, within Xcc-8004.3157.1at 3075.483 kb on - strand, within Xcc-8004.3157.1at 3075.483 kb on - strand, within Xcc-8004.3157.1at 3075.513 kb on - strand, within Xcc-8004.3157.1at 3075.698 kb on + strand, within Xcc-8004.3157.1at 3075.698 kb on + strand, within Xcc-8004.3157.1at 3075.698 kb on + strand, within Xcc-8004.3157.1at 3075.698 kb on + strand, within Xcc-8004.3157.1at 3075.698 kb on + strand, within Xcc-8004.3157.1at 3075.699 kb on - strand, within Xcc-8004.3157.1at 3075.699 kb on - strand, within Xcc-8004.3157.1at 3075.763 kb on + strand, within Xcc-8004.3157.1at 3075.764 kb on - strand, within Xcc-8004.3157.1at 3075.764 kb on - strand, within Xcc-8004.3157.1at 3075.764 kb on - strand, within Xcc-8004.3157.1at 3075.764 kb on - strand, within Xcc-8004.3157.1at 3075.764 kb on - strand, within Xcc-8004.3157.1at 3075.764 kb on - strand, within Xcc-8004.3157.1at 3075.764 kb on - strand, within Xcc-8004.3157.1at 3075.764 kb on - strand, within Xcc-8004.3157.1at 3075.764 kb on - strand, within Xcc-8004.3157.1at 3075.966 kb on + strandat 3075.966 kb on + strandat 3075.966 kb on + strandat 3075.967 kb on - strandat 3076.035 kb on + strand, within Xcc-8004.3158.1at 3076.036 kb on - strand, within Xcc-8004.3158.1at 3076.036 kb on - strand, within Xcc-8004.3158.1at 3076.036 kb on - strand, within Xcc-8004.3158.1at 3076.143 kb on - strand, within Xcc-8004.3158.1at 3076.221 kb on + strand, within Xcc-8004.3158.1at 3076.221 kb on + strand, within Xcc-8004.3158.1at 3076.221 kb on + strand, within Xcc-8004.3158.1at 3076.221 kb on + strand, within Xcc-8004.3158.1at 3076.221 kb on + strand, within Xcc-8004.3158.1at 3076.221 kb on + strand, within Xcc-8004.3158.1at 3076.221 kb on + strand, within Xcc-8004.3158.1at 3076.222 kb on - strand, within Xcc-8004.3158.1at 3076.222 kb on - strand, within Xcc-8004.3158.1at 3076.222 kb on - strand, within Xcc-8004.3158.1at 3076.222 kb on - strand, within Xcc-8004.3158.1at 3076.222 kb on - strand, within Xcc-8004.3158.1at 3076.222 kb on - strand, within Xcc-8004.3158.1at 3076.246 kb on - strand, within Xcc-8004.3158.1at 3076.480 kb on + strandat 3076.480 kb on + strandat 3076.480 kb on + strandat 3076.480 kb on + strandat 3076.480 kb on + strandat 3076.481 kb on - strandat 3076.481 kb on - strandat 3076.481 kb on - strandat 3076.481 kb on - strandat 3076.481 kb on - strandat 3076.481 kb on - strandat 3076.602 kb on + strandat 3076.602 kb on + strandat 3076.602 kb on + strandat 3076.602 kb on + strandat 3076.602 kb on + strandat 3076.602 kb on + strandat 3076.602 kb on + strandat 3076.603 kb on - strandat 3076.603 kb on - strandat 3076.603 kb on - strandat 3076.603 kb on - strandat 3076.606 kb on + strandat 3076.865 kb on + strand, within Xcc-8004.3159.1at 3076.865 kb on + strand, within Xcc-8004.3159.1at 3076.865 kb on + strand, within Xcc-8004.3159.1at 3076.865 kb on + strand, within Xcc-8004.3159.1at 3076.866 kb on - strand, within Xcc-8004.3159.1at 3076.866 kb on - strand, within Xcc-8004.3159.1at 3076.866 kb on - strand, within Xcc-8004.3159.1at 3076.887 kb on + strand, within Xcc-8004.3159.1at 3076.888 kb on - strand, within Xcc-8004.3159.1at 3076.888 kb on - strand, within Xcc-8004.3159.1at 3076.888 kb on - strand, within Xcc-8004.3159.1at 3076.930 kb on - strand, within Xcc-8004.3159.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes)
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3,074,901 + Xcc-8004.3156.1 0.71 +0.4
3,074,901 + Xcc-8004.3156.1 0.71 -3.1
3,074,901 + Xcc-8004.3156.1 0.71 -2.0
3,074,902 - Xcc-8004.3156.1 0.71 -2.7
3,075,102 + Xcc-8004.3156.1 0.87 +0.5
3,075,129 + Xcc-8004.3156.1 0.89 -3.7
3,075,129 + Xcc-8004.3156.1 0.89 +0.1
3,075,130 - Xcc-8004.3156.1 0.89 -2.5
3,075,130 - Xcc-8004.3156.1 0.89 -2.2
3,075,130 - Xcc-8004.3156.1 0.89 -2.5
3,075,130 - Xcc-8004.3156.1 0.89 -1.4
3,075,130 - Xcc-8004.3156.1 0.89 +0.4
3,075,130 - Xcc-8004.3156.1 0.89 -1.6
3,075,130 - Xcc-8004.3156.1 0.89 +1.0
3,075,130 - Xcc-8004.3156.1 0.89 -0.6
3,075,132 + Xcc-8004.3156.1 0.89 -2.5
3,075,132 + Xcc-8004.3156.1 0.89 -0.8
3,075,132 + Xcc-8004.3156.1 0.89 -2.5
3,075,132 + Xcc-8004.3156.1 0.89 -1.0
3,075,133 - Xcc-8004.3156.1 0.89 -1.1
3,075,133 - Xcc-8004.3156.1 0.89 -2.6
3,075,482 + Xcc-8004.3157.1 0.33 -0.1
3,075,483 - Xcc-8004.3157.1 0.33 +1.3
3,075,483 - Xcc-8004.3157.1 0.33 -1.2
3,075,513 - Xcc-8004.3157.1 0.38 +2.9
3,075,698 + Xcc-8004.3157.1 0.65 +1.7
3,075,698 + Xcc-8004.3157.1 0.65 -2.1
3,075,698 + Xcc-8004.3157.1 0.65 -0.8
3,075,698 + Xcc-8004.3157.1 0.65 +3.0
3,075,698 + Xcc-8004.3157.1 0.65 +0.4
3,075,699 - Xcc-8004.3157.1 0.65 -1.5
3,075,699 - Xcc-8004.3157.1 0.65 -0.5
3,075,763 + Xcc-8004.3157.1 0.75 +0.2
3,075,764 - Xcc-8004.3157.1 0.75 +1.8
3,075,764 - Xcc-8004.3157.1 0.75 +1.0
3,075,764 - Xcc-8004.3157.1 0.75 +1.8
3,075,764 - Xcc-8004.3157.1 0.75 -1.7
3,075,764 - Xcc-8004.3157.1 0.75 -2.8
3,075,764 - Xcc-8004.3157.1 0.75 -0.9
3,075,764 - Xcc-8004.3157.1 0.75 +0.7
3,075,764 - Xcc-8004.3157.1 0.75 +0.9
3,075,764 - Xcc-8004.3157.1 0.75 -0.2
3,075,966 + -0.0
3,075,966 + -0.3
3,075,966 + -1.6
3,075,967 - -1.7
3,076,035 + Xcc-8004.3158.1 0.14 -0.4
3,076,036 - Xcc-8004.3158.1 0.14 +1.5
3,076,036 - Xcc-8004.3158.1 0.14 -1.0
3,076,036 - Xcc-8004.3158.1 0.14 +0.2
3,076,143 - Xcc-8004.3158.1 0.36 +0.9
3,076,221 + Xcc-8004.3158.1 0.51 +1.8
3,076,221 + Xcc-8004.3158.1 0.51 +0.5
3,076,221 + Xcc-8004.3158.1 0.51 -0.4
3,076,221 + Xcc-8004.3158.1 0.51 -0.6
3,076,221 + Xcc-8004.3158.1 0.51 +0.5
3,076,221 + Xcc-8004.3158.1 0.51 +0.4
3,076,221 + Xcc-8004.3158.1 0.51 +0.8
3,076,222 - Xcc-8004.3158.1 0.51 +1.2
3,076,222 - Xcc-8004.3158.1 0.51 +0.6
3,076,222 - Xcc-8004.3158.1 0.51 +0.0
3,076,222 - Xcc-8004.3158.1 0.51 +1.9
3,076,222 - Xcc-8004.3158.1 0.51 -2.7
3,076,222 - Xcc-8004.3158.1 0.51 -1.2
3,076,246 - Xcc-8004.3158.1 0.56 -1.4
3,076,480 + +1.2
3,076,480 + +1.4
3,076,480 + +1.4
3,076,480 + -1.5
3,076,480 + +0.4
3,076,481 - +0.9
3,076,481 - -0.8
3,076,481 - -0.3
3,076,481 - +0.7
3,076,481 - -1.4
3,076,481 - -2.2
3,076,602 + -0.4
3,076,602 + -1.1
3,076,602 + -1.1
3,076,602 + -0.4
3,076,602 + +0.3
3,076,602 + -1.0
3,076,602 + -2.3
3,076,603 - -0.8
3,076,603 - -0.4
3,076,603 - -0.1
3,076,603 - +1.8
3,076,606 + -2.5
3,076,865 + Xcc-8004.3159.1 0.34 +0.2
3,076,865 + Xcc-8004.3159.1 0.34 -0.2
3,076,865 + Xcc-8004.3159.1 0.34 +2.4
3,076,865 + Xcc-8004.3159.1 0.34 -0.2
3,076,866 - Xcc-8004.3159.1 0.34 +0.8
3,076,866 - Xcc-8004.3159.1 0.34 -0.9
3,076,866 - Xcc-8004.3159.1 0.34 +0.2
3,076,887 + Xcc-8004.3159.1 0.36 -0.4
3,076,888 - Xcc-8004.3159.1 0.36 -1.4
3,076,888 - Xcc-8004.3159.1 0.36 -0.8
3,076,888 - Xcc-8004.3159.1 0.36 +1.0
3,076,930 - Xcc-8004.3159.1 0.40 -1.4

Or see this region's nucleotide sequence