Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3072.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3071.1 and Xcc-8004.3072.1 overlap by 4 nucleotidesXcc-8004.3072.1 and Xcc-8004.3073.1 overlap by 4 nucleotides Xcc-8004.3071.1: Xcc-8004.3071.1 - sialic acid-specific 9-O-acetylesterase, at 3,005,305 to 3,007,218 Xcc-8004.3071.1 Xcc-8004.3072.1: Xcc-8004.3072.1 - hypothetical protein, at 3,007,215 to 3,007,325 Xcc-8004.3072.1 Xcc-8004.3073.1: Xcc-8004.3073.1 - Cellulase, at 3,007,322 to 3,009,577 Xcc-8004.3073.1 Position (kb) 3007 3008Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3006.215 kb on + strand, within Xcc-8004.3071.1at 3006.215 kb on + strand, within Xcc-8004.3071.1at 3006.215 kb on + strand, within Xcc-8004.3071.1at 3006.215 kb on + strand, within Xcc-8004.3071.1at 3006.215 kb on + strand, within Xcc-8004.3071.1at 3006.215 kb on + strand, within Xcc-8004.3071.1at 3006.215 kb on + strand, within Xcc-8004.3071.1at 3006.215 kb on + strand, within Xcc-8004.3071.1at 3006.216 kb on - strand, within Xcc-8004.3071.1at 3006.216 kb on - strand, within Xcc-8004.3071.1at 3006.216 kb on - strand, within Xcc-8004.3071.1at 3006.216 kb on - strand, within Xcc-8004.3071.1at 3006.216 kb on - strand, within Xcc-8004.3071.1at 3006.216 kb on - strand, within Xcc-8004.3071.1at 3006.216 kb on - strand, within Xcc-8004.3071.1at 3006.216 kb on - strand, within Xcc-8004.3071.1at 3006.216 kb on - strand, within Xcc-8004.3071.1at 3006.216 kb on - strand, within Xcc-8004.3071.1at 3006.272 kb on + strand, within Xcc-8004.3071.1at 3006.272 kb on + strand, within Xcc-8004.3071.1at 3006.272 kb on + strand, within Xcc-8004.3071.1at 3006.272 kb on + strand, within Xcc-8004.3071.1at 3006.272 kb on + strand, within Xcc-8004.3071.1at 3006.272 kb on + strand, within Xcc-8004.3071.1at 3006.272 kb on + strand, within Xcc-8004.3071.1at 3006.272 kb on + strand, within Xcc-8004.3071.1at 3006.272 kb on + strand, within Xcc-8004.3071.1at 3006.272 kb on + strand, within Xcc-8004.3071.1at 3006.272 kb on + strand, within Xcc-8004.3071.1at 3006.272 kb on + strand, within Xcc-8004.3071.1at 3006.272 kb on + strand, within Xcc-8004.3071.1at 3006.272 kb on + strand, within Xcc-8004.3071.1at 3006.273 kb on - strand, within Xcc-8004.3071.1at 3006.273 kb on - strand, within Xcc-8004.3071.1at 3006.273 kb on - strand, within Xcc-8004.3071.1at 3006.273 kb on - strand, within Xcc-8004.3071.1at 3006.273 kb on - strand, within Xcc-8004.3071.1at 3006.273 kb on - strand, within Xcc-8004.3071.1at 3006.345 kb on + strand, within Xcc-8004.3071.1at 3006.345 kb on + strand, within Xcc-8004.3071.1at 3006.346 kb on - strand, within Xcc-8004.3071.1at 3006.387 kb on - strand, within Xcc-8004.3071.1at 3006.387 kb on - strand, within Xcc-8004.3071.1at 3006.653 kb on - strand, within Xcc-8004.3071.1at 3006.689 kb on + strand, within Xcc-8004.3071.1at 3006.689 kb on + strand, within Xcc-8004.3071.1at 3006.690 kb on - strand, within Xcc-8004.3071.1at 3006.959 kb on + strand, within Xcc-8004.3071.1at 3006.959 kb on + strand, within Xcc-8004.3071.1at 3006.959 kb on + strand, within Xcc-8004.3071.1at 3006.959 kb on + strand, within Xcc-8004.3071.1at 3006.959 kb on + strand, within Xcc-8004.3071.1at 3006.959 kb on + strand, within Xcc-8004.3071.1at 3006.959 kb on + strand, within Xcc-8004.3071.1at 3006.959 kb on + strand, within Xcc-8004.3071.1at 3006.959 kb on + strand, within Xcc-8004.3071.1at 3006.959 kb on + strand, within Xcc-8004.3071.1at 3006.960 kb on - strand, within Xcc-8004.3071.1at 3006.960 kb on - strand, within Xcc-8004.3071.1at 3006.960 kb on - strand, within Xcc-8004.3071.1at 3006.960 kb on - strand, within Xcc-8004.3071.1at 3007.203 kb on + strandat 3007.203 kb on + strandat 3007.203 kb on + strandat 3007.204 kb on - strandat 3007.204 kb on - strandat 3007.279 kb on + strand, within Xcc-8004.3072.1at 3007.280 kb on - strand, within Xcc-8004.3072.1at 3007.286 kb on + strand, within Xcc-8004.3072.1at 3007.286 kb on + strand, within Xcc-8004.3072.1at 3007.287 kb on - strand, within Xcc-8004.3072.1at 3007.339 kb on - strandat 3007.368 kb on + strandat 3007.368 kb on + strandat 3007.369 kb on - strandat 3007.369 kb on - strandat 3007.369 kb on - strandat 3007.369 kb on - strandat 3007.408 kb on - strandat 3007.512 kb on + strandat 3007.513 kb on - strandat 3007.513 kb on - strandat 3007.641 kb on + strand, within Xcc-8004.3073.1at 3007.641 kb on + strand, within Xcc-8004.3073.1at 3007.641 kb on + strand, within Xcc-8004.3073.1at 3007.641 kb on + strand, within Xcc-8004.3073.1at 3007.641 kb on + strand, within Xcc-8004.3073.1at 3007.642 kb on - strand, within Xcc-8004.3073.1at 3007.642 kb on - strand, within Xcc-8004.3073.1at 3007.642 kb on - strand, within Xcc-8004.3073.1at 3007.761 kb on + strand, within Xcc-8004.3073.1at 3007.761 kb on + strand, within Xcc-8004.3073.1at 3007.761 kb on + strand, within Xcc-8004.3073.1at 3007.762 kb on - strand, within Xcc-8004.3073.1at 3007.762 kb on - strand, within Xcc-8004.3073.1at 3007.792 kb on - strand, within Xcc-8004.3073.1at 3007.792 kb on - strand, within Xcc-8004.3073.1at 3008.016 kb on + strand, within Xcc-8004.3073.1at 3008.017 kb on - strand, within Xcc-8004.3073.1at 3008.051 kb on + strand, within Xcc-8004.3073.1at 3008.051 kb on + strand, within Xcc-8004.3073.1at 3008.051 kb on + strand, within Xcc-8004.3073.1at 3008.051 kb on + strand, within Xcc-8004.3073.1at 3008.051 kb on + strand, within Xcc-8004.3073.1at 3008.051 kb on + strand, within Xcc-8004.3073.1at 3008.051 kb on + strand, within Xcc-8004.3073.1at 3008.051 kb on + strand, within Xcc-8004.3073.1at 3008.052 kb on - strand, within Xcc-8004.3073.1at 3008.052 kb on - strand, within Xcc-8004.3073.1at 3008.052 kb on - strand, within Xcc-8004.3073.1at 3008.052 kb on - strand, within Xcc-8004.3073.1at 3008.052 kb on - strand, within Xcc-8004.3073.1at 3008.134 kb on - strand, within Xcc-8004.3073.1at 3008.179 kb on + strand, within Xcc-8004.3073.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes)
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3,006,215 + Xcc-8004.3071.1 0.48 +0.8
3,006,215 + Xcc-8004.3071.1 0.48 -1.8
3,006,215 + Xcc-8004.3071.1 0.48 +0.7
3,006,215 + Xcc-8004.3071.1 0.48 +0.5
3,006,215 + Xcc-8004.3071.1 0.48 -3.0
3,006,215 + Xcc-8004.3071.1 0.48 +0.6
3,006,215 + Xcc-8004.3071.1 0.48 +1.6
3,006,215 + Xcc-8004.3071.1 0.48 -1.9
3,006,216 - Xcc-8004.3071.1 0.48 +1.6
3,006,216 - Xcc-8004.3071.1 0.48 +1.4
3,006,216 - Xcc-8004.3071.1 0.48 -1.4
3,006,216 - Xcc-8004.3071.1 0.48 +0.7
3,006,216 - Xcc-8004.3071.1 0.48 +2.3
3,006,216 - Xcc-8004.3071.1 0.48 +1.7
3,006,216 - Xcc-8004.3071.1 0.48 +0.6
3,006,216 - Xcc-8004.3071.1 0.48 +0.3
3,006,216 - Xcc-8004.3071.1 0.48 +0.5
3,006,216 - Xcc-8004.3071.1 0.48 +2.5
3,006,272 + Xcc-8004.3071.1 0.51 -3.5
3,006,272 + Xcc-8004.3071.1 0.51 -1.6
3,006,272 + Xcc-8004.3071.1 0.51 -0.8
3,006,272 + Xcc-8004.3071.1 0.51 -3.5
3,006,272 + Xcc-8004.3071.1 0.51 +2.1
3,006,272 + Xcc-8004.3071.1 0.51 -2.2
3,006,272 + Xcc-8004.3071.1 0.51 +4.6
3,006,272 + Xcc-8004.3071.1 0.51 +1.8
3,006,272 + Xcc-8004.3071.1 0.51 +0.9
3,006,272 + Xcc-8004.3071.1 0.51 -1.0
3,006,272 + Xcc-8004.3071.1 0.51 -2.1
3,006,272 + Xcc-8004.3071.1 0.51 -0.9
3,006,272 + Xcc-8004.3071.1 0.51 +3.5
3,006,272 + Xcc-8004.3071.1 0.51 +1.0
3,006,273 - Xcc-8004.3071.1 0.51 +0.5
3,006,273 - Xcc-8004.3071.1 0.51 -0.4
3,006,273 - Xcc-8004.3071.1 0.51 -0.6
3,006,273 - Xcc-8004.3071.1 0.51 -1.6
3,006,273 - Xcc-8004.3071.1 0.51 -1.4
3,006,273 - Xcc-8004.3071.1 0.51 +1.2
3,006,345 + Xcc-8004.3071.1 0.54 +0.5
3,006,345 + Xcc-8004.3071.1 0.54 +1.2
3,006,346 - Xcc-8004.3071.1 0.54 -1.8
3,006,387 - Xcc-8004.3071.1 0.57 -0.2
3,006,387 - Xcc-8004.3071.1 0.57 +2.3
3,006,653 - Xcc-8004.3071.1 0.70 +0.7
3,006,689 + Xcc-8004.3071.1 0.72 +1.2
3,006,689 + Xcc-8004.3071.1 0.72 +0.4
3,006,690 - Xcc-8004.3071.1 0.72 -0.6
3,006,959 + Xcc-8004.3071.1 0.86 +3.4
3,006,959 + Xcc-8004.3071.1 0.86 +0.8
3,006,959 + Xcc-8004.3071.1 0.86 +1.4
3,006,959 + Xcc-8004.3071.1 0.86 -0.6
3,006,959 + Xcc-8004.3071.1 0.86 +0.0
3,006,959 + Xcc-8004.3071.1 0.86 +1.6
3,006,959 + Xcc-8004.3071.1 0.86 -1.8
3,006,959 + Xcc-8004.3071.1 0.86 -2.2
3,006,959 + Xcc-8004.3071.1 0.86 +1.6
3,006,959 + Xcc-8004.3071.1 0.86 +0.7
3,006,960 - Xcc-8004.3071.1 0.86 +1.2
3,006,960 - Xcc-8004.3071.1 0.86 -2.3
3,006,960 - Xcc-8004.3071.1 0.86 -0.6
3,006,960 - Xcc-8004.3071.1 0.86 -0.0
3,007,203 + -1.2
3,007,203 + -1.4
3,007,203 + -0.6
3,007,204 - +0.2
3,007,204 - -0.1
3,007,279 + Xcc-8004.3072.1 0.58 -2.5
3,007,280 - Xcc-8004.3072.1 0.59 +0.9
3,007,286 + Xcc-8004.3072.1 0.64 -1.2
3,007,286 + Xcc-8004.3072.1 0.64 -2.5
3,007,287 - Xcc-8004.3072.1 0.65 -2.1
3,007,339 - -0.9
3,007,368 + +0.2
3,007,368 + -0.6
3,007,369 - +0.4
3,007,369 - -0.2
3,007,369 - +0.6
3,007,369 - -0.8
3,007,408 - +0.5
3,007,512 + +0.5
3,007,513 - +1.7
3,007,513 - -1.1
3,007,641 + Xcc-8004.3073.1 0.14 +0.2
3,007,641 + Xcc-8004.3073.1 0.14 +0.1
3,007,641 + Xcc-8004.3073.1 0.14 -1.5
3,007,641 + Xcc-8004.3073.1 0.14 +1.4
3,007,641 + Xcc-8004.3073.1 0.14 +1.0
3,007,642 - Xcc-8004.3073.1 0.14 +1.0
3,007,642 - Xcc-8004.3073.1 0.14 +1.7
3,007,642 - Xcc-8004.3073.1 0.14 -2.4
3,007,761 + Xcc-8004.3073.1 0.19 -1.6
3,007,761 + Xcc-8004.3073.1 0.19 -1.6
3,007,761 + Xcc-8004.3073.1 0.19 -0.9
3,007,762 - Xcc-8004.3073.1 0.20 -1.3
3,007,762 - Xcc-8004.3073.1 0.20 +0.1
3,007,792 - Xcc-8004.3073.1 0.21 -1.9
3,007,792 - Xcc-8004.3073.1 0.21 +3.7
3,008,016 + Xcc-8004.3073.1 0.31 +1.6
3,008,017 - Xcc-8004.3073.1 0.31 -0.0
3,008,051 + Xcc-8004.3073.1 0.32 -0.5
3,008,051 + Xcc-8004.3073.1 0.32 -0.3
3,008,051 + Xcc-8004.3073.1 0.32 +0.9
3,008,051 + Xcc-8004.3073.1 0.32 -2.2
3,008,051 + Xcc-8004.3073.1 0.32 -2.4
3,008,051 + Xcc-8004.3073.1 0.32 +0.5
3,008,051 + Xcc-8004.3073.1 0.32 -2.1
3,008,051 + Xcc-8004.3073.1 0.32 -0.1
3,008,052 - Xcc-8004.3073.1 0.32 -0.8
3,008,052 - Xcc-8004.3073.1 0.32 +0.7
3,008,052 - Xcc-8004.3073.1 0.32 -1.7
3,008,052 - Xcc-8004.3073.1 0.32 +0.4
3,008,052 - Xcc-8004.3073.1 0.32 +0.8
3,008,134 - Xcc-8004.3073.1 0.36 +0.2
3,008,179 + Xcc-8004.3073.1 0.38 +0.1

Or see this region's nucleotide sequence