Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3045.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylemvessel barcodes Location 3 6 dpi (25 plantes)
2,975,699	+		Xcc-8004.3044.1	0.54	+2.6
2,975,699	+		Xcc-8004.3044.1	0.54	+1.0
2,975,699	+		Xcc-8004.3044.1	0.54	+1.4
2,975,699	+		Xcc-8004.3044.1	0.54	+2.5
2,975,699	+		Xcc-8004.3044.1	0.54	-0.1
2,975,700	-		Xcc-8004.3044.1	0.54	-0.0
2,975,892	-		Xcc-8004.3044.1	0.67	-0.4
2,975,892	-		Xcc-8004.3044.1	0.67	+0.5
2,975,892	-		Xcc-8004.3044.1	0.67	-0.7
2,975,900	+		Xcc-8004.3044.1	0.67	+1.7
2,975,900	+		Xcc-8004.3044.1	0.67	-0.6
2,975,900	+		Xcc-8004.3044.1	0.67	+1.3
2,975,900	+		Xcc-8004.3044.1	0.67	+1.5
2,975,900	+		Xcc-8004.3044.1	0.67	-1.8
2,975,900	+		Xcc-8004.3044.1	0.67	+1.0
2,975,900	+		Xcc-8004.3044.1	0.67	-0.2
2,975,901	-		Xcc-8004.3044.1	0.67	-2.4
2,975,901	-		Xcc-8004.3044.1	0.67	+0.9
2,975,901	-		Xcc-8004.3044.1	0.67	+0.4
2,975,901	-		Xcc-8004.3044.1	0.67	-0.3
2,975,901	-		Xcc-8004.3044.1	0.67	-1.1
2,976,014	+		Xcc-8004.3044.1	0.75	-1.3
2,976,015	-		Xcc-8004.3044.1	0.75	+0.2
2,976,015	-		Xcc-8004.3044.1	0.75	-3.6
2,976,015	-		Xcc-8004.3044.1	0.75	-1.1
2,976,015	-		Xcc-8004.3044.1	0.75	+3.0
2,976,092	+		Xcc-8004.3044.1	0.80	+1.2
2,976,092	+		Xcc-8004.3044.1	0.80	+2.9
2,976,092	+		Xcc-8004.3044.1	0.80	+0.3
2,976,092	+		Xcc-8004.3044.1	0.80	+0.5
2,976,092	+		Xcc-8004.3044.1	0.80	-0.3
2,976,092	+		Xcc-8004.3044.1	0.80	-1.6
2,976,092	+		Xcc-8004.3044.1	0.80	-2.1
2,976,092	+		Xcc-8004.3044.1	0.80	-1.7
2,976,092	+		Xcc-8004.3044.1	0.80	+3.2
2,976,092	+		Xcc-8004.3044.1	0.80	-1.1
2,976,093	-		Xcc-8004.3044.1	0.80	+3.0
2,976,093	-		Xcc-8004.3044.1	0.80	+0.7
2,976,093	-		Xcc-8004.3044.1	0.80	-0.2
2,976,093	-		Xcc-8004.3044.1	0.80	-3.0
2,976,093	-		Xcc-8004.3044.1	0.80	-1.5
2,976,093	-		Xcc-8004.3044.1	0.80	+1.4
2,976,093	-		Xcc-8004.3044.1	0.80	-0.3
2,976,093	-		Xcc-8004.3044.1	0.80	-0.3
2,976,167	+		Xcc-8004.3044.1	0.84	-1.1
2,976,167	+		Xcc-8004.3044.1	0.84	+1.0
2,976,167	+		Xcc-8004.3044.1	0.84	-0.6
2,976,167	+		Xcc-8004.3044.1	0.84	+1.8
2,976,168	-		Xcc-8004.3044.1	0.84	-0.4
2,976,168	-		Xcc-8004.3044.1	0.84	-2.4
2,976,168	-		Xcc-8004.3044.1	0.84	-0.1
2,976,168	-		Xcc-8004.3044.1	0.84	-0.9
2,976,234	+		Xcc-8004.3044.1	0.89	+0.1
2,976,234	+		Xcc-8004.3044.1	0.89	+1.7
2,976,234	+		Xcc-8004.3044.1	0.89	-0.1
2,976,235	-		Xcc-8004.3044.1	0.89	+1.2
2,976,296	+				+0.7
2,976,297	-				-1.8
2,976,297	-				+0.5
2,976,297	-				-0.0
2,976,297	-				+1.7
2,976,297	-				-0.1
2,976,371	+				+1.8
2,976,371	+				-1.4
2,976,371	+				-0.7
2,976,371	+				-2.1
2,976,371	+				-0.7
2,976,372	-				-0.6
2,976,372	-				+0.3
2,976,372	-				+2.2
2,976,372	-				+1.1
2,976,372	-				+0.4
2,976,372	-				-0.1
2,976,483	+				+1.6
2,976,483	+				+0.0
2,976,483	+				-1.6
2,976,483	+				+1.1
2,976,483	+				-2.2
2,976,483	+				-0.9
2,976,483	+				+2.3
2,976,484	-				+2.1
2,976,484	-				-0.1
2,976,484	-				-0.7
2,976,484	-				+1.1
2,976,484	-				-2.8
2,976,484	-				-1.7
2,976,484	-				-3.1
2,976,484	-				+1.6
2,976,484	-				+2.1
2,976,484	-				-1.5
2,976,484	-				+0.3
2,976,487	+				-0.0
2,976,487	+				+0.8
2,976,487	+				+3.9
2,976,487	+				+0.1
2,976,487	+				+2.9
2,976,488	-				+0.4
2,976,488	-				+0.5
2,976,488	-				+0.1
2,976,488	-				+1.0
2,976,488	-				-0.3
2,976,488	-				+1.4
2,976,488	-				+2.3
2,976,491	+				-1.5
2,976,492	-				+0.0
2,976,492	-				-1.4
2,976,492	-				+1.6
2,976,492	-				+1.4
2,976,492	-				+1.5
2,976,673	+				-0.2
2,976,673	+				+0.0
2,976,673	+				-1.2
2,976,673	+				-2.5
2,976,673	+				+1.4
2,976,673	+				-1.3
2,976,673	+				+3.0
2,976,673	+				+0.2
2,976,674	-				-0.0
2,976,674	-				+0.2
2,976,674	-				-0.9
2,976,674	-				+0.8
2,976,674	-				+0.5
2,976,674	-				-2.1
2,976,674	-				-0.4
2,976,674	-				-1.4
2,976,674	-				-0.9
2,977,216	+		Xcc-8004.3045.1	0.21	+0.8
2,977,216	+		Xcc-8004.3045.1	0.21	+0.6
2,977,216	+		Xcc-8004.3045.1	0.21	-3.8
2,977,216	+		Xcc-8004.3045.1	0.21	+0.4
2,977,217	-		Xcc-8004.3045.1	0.21	+1.2
2,977,217	-		Xcc-8004.3045.1	0.21	+1.5
2,977,217	-		Xcc-8004.3045.1	0.21	+0.8
2,977,217	-		Xcc-8004.3045.1	0.21	+1.4
2,977,217	-		Xcc-8004.3045.1	0.21	-2.4
2,977,217	-		Xcc-8004.3045.1	0.21	+0.4
2,977,327	+		Xcc-8004.3045.1	0.25	-1.6
2,977,327	+		Xcc-8004.3045.1	0.25	-0.3
2,977,327	+		Xcc-8004.3045.1	0.25	-1.6
2,977,327	+		Xcc-8004.3045.1	0.25	-3.0
2,977,328	-		Xcc-8004.3045.1	0.25	-2.8
2,977,328	-		Xcc-8004.3045.1	0.25	-0.6
2,977,328	-		Xcc-8004.3045.1	0.25	-0.7
2,977,328	-		Xcc-8004.3045.1	0.25	+0.4
2,977,328	-		Xcc-8004.3045.1	0.25	-0.2
2,977,507	+		Xcc-8004.3045.1	0.32	-0.9
2,977,507	+		Xcc-8004.3045.1	0.32	-1.3
2,977,507	+		Xcc-8004.3045.1	0.32	+0.1
2,977,507	+		Xcc-8004.3045.1	0.32	-1.2
2,977,507	+		Xcc-8004.3045.1	0.32	+1.9
2,977,507	+		Xcc-8004.3045.1	0.32	+0.8
2,977,508	-		Xcc-8004.3045.1	0.32	-0.9
2,977,508	-		Xcc-8004.3045.1	0.32	+0.1
2,977,508	-		Xcc-8004.3045.1	0.32	+0.5
2,977,508	-		Xcc-8004.3045.1	0.32	+2.6
2,977,508	-		Xcc-8004.3045.1	0.32	+1.0
2,977,615	+		Xcc-8004.3045.1	0.36	-0.2
2,977,615	+		Xcc-8004.3045.1	0.36	-3.1
2,977,616	-		Xcc-8004.3045.1	0.36	+3.4
2,977,616	-		Xcc-8004.3045.1	0.36	-2.2
2,977,616	-		Xcc-8004.3045.1	0.36	-4.1
2,977,616	-		Xcc-8004.3045.1	0.36	-2.8
2,977,651	+		Xcc-8004.3045.1	0.37	-1.0
2,977,699	+		Xcc-8004.3045.1	0.39	+1.1
2,977,699	+		Xcc-8004.3045.1	0.39	+1.4
2,977,700	-		Xcc-8004.3045.1	0.39	-0.6
2,977,700	-		Xcc-8004.3045.1	0.39	+0.5
2,977,700	-		Xcc-8004.3045.1	0.39	+0.4
2,978,137	+		Xcc-8004.3045.1	0.56	-1.2
2,978,137	+		Xcc-8004.3045.1	0.56	-0.0
2,978,137	+		Xcc-8004.3045.1	0.56	-0.6
2,978,137	+		Xcc-8004.3045.1	0.56	+0.8
2,978,137	+		Xcc-8004.3045.1	0.56	-3.2
2,978,137	+		Xcc-8004.3045.1	0.56	-2.5
2,978,137	+		Xcc-8004.3045.1	0.56	+0.1
2,978,137	+		Xcc-8004.3045.1	0.56	-1.9
2,978,137	+		Xcc-8004.3045.1	0.56	-1.9
2,978,137	+		Xcc-8004.3045.1	0.56	-2.0
2,978,137	+		Xcc-8004.3045.1	0.56	-0.3
2,978,137	+		Xcc-8004.3045.1	0.56	+0.7
2,978,137	+		Xcc-8004.3045.1	0.56	-1.0
2,978,137	+		Xcc-8004.3045.1	0.56	+1.8
2,978,137	+		Xcc-8004.3045.1	0.56	+1.1
2,978,137	+		Xcc-8004.3045.1	0.56	-0.9
2,978,137	+		Xcc-8004.3045.1	0.56	-0.7
2,978,137	+		Xcc-8004.3045.1	0.56	+0.4
2,978,137	+		Xcc-8004.3045.1	0.56	-1.7
2,978,137	+		Xcc-8004.3045.1	0.56	-2.9
2,978,138	-		Xcc-8004.3045.1	0.56	-2.3
2,978,138	-		Xcc-8004.3045.1	0.56	-2.8
2,978,138	-		Xcc-8004.3045.1	0.56	-3.4
2,978,138	-		Xcc-8004.3045.1	0.56	-3.9
2,978,138	-		Xcc-8004.3045.1	0.56	+0.1
2,978,138	-		Xcc-8004.3045.1	0.56	-0.9
2,978,138	-		Xcc-8004.3045.1	0.56	+1.4
2,978,138	-		Xcc-8004.3045.1	0.56	-1.4
2,978,138	-		Xcc-8004.3045.1	0.56	-2.8
2,978,138	-		Xcc-8004.3045.1	0.56	+0.9
2,978,222	+		Xcc-8004.3045.1	0.59	-1.2
2,978,223	-		Xcc-8004.3045.1	0.59	+0.1
2,978,433	-		Xcc-8004.3045.1	0.67	+3.2
2,978,532	+		Xcc-8004.3045.1	0.71	+1.8
2,978,596	+		Xcc-8004.3045.1	0.74	+0.1
2,978,596	+		Xcc-8004.3045.1	0.74	+1.1
2,978,596	+		Xcc-8004.3045.1	0.74	+1.3
2,978,597	-		Xcc-8004.3045.1	0.74	+0.7
2,978,597	-		Xcc-8004.3045.1	0.74	+1.3
2,978,597	-		Xcc-8004.3045.1	0.74	-1.3
2,978,605	+		Xcc-8004.3045.1	0.74	+0.8
2,978,605	+		Xcc-8004.3045.1	0.74	+1.3
2,978,606	-		Xcc-8004.3045.1	0.74	-1.1
2,978,606	-		Xcc-8004.3045.1	0.74	-0.8
2,978,606	-		Xcc-8004.3045.1	0.74	+1.6
2,978,860	+		Xcc-8004.3045.1	0.84	-0.1
2,978,860	+		Xcc-8004.3045.1	0.84	-2.1
2,978,860	+		Xcc-8004.3045.1	0.84	+1.3
2,978,860	+		Xcc-8004.3045.1	0.84	-0.5
2,978,860	+		Xcc-8004.3045.1	0.84	-1.1
2,978,860	+		Xcc-8004.3045.1	0.84	+0.2
2,978,860	+		Xcc-8004.3045.1	0.84	-2.2
2,978,860	+		Xcc-8004.3045.1	0.84	-0.6
2,978,860	+		Xcc-8004.3045.1	0.84	+0.7
2,978,860	+		Xcc-8004.3045.1	0.84	-0.5
2,978,860	+		Xcc-8004.3045.1	0.84	-1.7
2,978,860	+		Xcc-8004.3045.1	0.84	-3.3
2,978,860	+		Xcc-8004.3045.1	0.84	-0.0
2,978,860	+		Xcc-8004.3045.1	0.84	+1.4
2,978,861	-		Xcc-8004.3045.1	0.84	-0.0
2,978,861	-		Xcc-8004.3045.1	0.84	-0.5
2,978,861	-		Xcc-8004.3045.1	0.84	+1.4
2,978,861	-		Xcc-8004.3045.1	0.84	+1.4
2,978,861	-		Xcc-8004.3045.1	0.84	-1.8
2,978,861	-		Xcc-8004.3045.1	0.84	+0.7
2,978,861	-		Xcc-8004.3045.1	0.84	-2.9
2,978,861	-		Xcc-8004.3045.1	0.84	+5.5
2,978,905	+		Xcc-8004.3045.1	0.85	+0.8
2,978,905	+		Xcc-8004.3045.1	0.85	-0.7
2,978,905	+		Xcc-8004.3045.1	0.85	-0.2
2,978,905	+		Xcc-8004.3045.1	0.85	+1.1
2,978,905	+		Xcc-8004.3045.1	0.85	-1.1
2,978,905	+		Xcc-8004.3045.1	0.85	+1.9
2,978,905	+		Xcc-8004.3045.1	0.85	-2.7
2,978,906	-		Xcc-8004.3045.1	0.85	-0.6
2,978,906	-		Xcc-8004.3045.1	0.85	+0.4
2,978,906	-		Xcc-8004.3045.1	0.85	-1.3
2,978,906	-		Xcc-8004.3045.1	0.85	-0.8
2,978,956	+		Xcc-8004.3045.1	0.87	+0.8
2,978,956	+		Xcc-8004.3045.1	0.87	-3.3
2,978,956	+		Xcc-8004.3045.1	0.87	+2.1
2,978,956	+		Xcc-8004.3045.1	0.87	+2.4
2,978,957	-		Xcc-8004.3045.1	0.87	+0.7
2,978,957	-		Xcc-8004.3045.1	0.87	-2.2
2,979,344	-				+0.5
2,979,344	-				-0.3
2,979,353	-				-1.8
2,979,372	-				+2.1
2,979,417	-				-0.8
2,979,429	+				-0.9
2,979,429	+				+0.5
2,979,430	-				-1.0
2,979,430	-				-0.7
2,979,430	-				+1.8
2,979,431	+				+0.4
2,979,431	+				-1.8
2,979,442	+				+0.9
2,979,567	+				+0.3
2,979,658	+				+1.4
2,979,658	+				-1.3
2,979,658	+				-1.2
2,979,658	+				+0.2
2,979,659	-				+0.7
2,979,659	-				+0.4
2,979,659	-				-0.2
2,979,659	-				+0.9
2,980,000	+		Xcc-8004.3046.1	0.14	+0.6
2,980,000	+		Xcc-8004.3046.1	0.14	+1.4
2,980,001	-		Xcc-8004.3046.1	0.14	-1.7
2,980,001	-		Xcc-8004.3046.1	0.14	+0.8
2,980,013	-		Xcc-8004.3046.1	0.15	+0.7
2,980,013	-		Xcc-8004.3046.1	0.15	+0.9
2,980,013	-		Xcc-8004.3046.1	0.15	+0.2
2,980,013	-		Xcc-8004.3046.1	0.15	-1.2
2,980,062	+		Xcc-8004.3046.1	0.17	+1.3
2,980,081	+		Xcc-8004.3046.1	0.18	+0.6
2,980,081	+		Xcc-8004.3046.1	0.18	+7.5
2,980,081	+		Xcc-8004.3046.1	0.18	-0.4
2,980,081	+		Xcc-8004.3046.1	0.18	+0.7
2,980,081	+		Xcc-8004.3046.1	0.18	-0.6
2,980,082	-		Xcc-8004.3046.1	0.18	-1.2
2,980,084	+		Xcc-8004.3046.1	0.19	-2.2
2,980,084	+		Xcc-8004.3046.1	0.19	+1.0
2,980,084	+		Xcc-8004.3046.1	0.19	-1.5
2,980,084	+		Xcc-8004.3046.1	0.19	-2.5
2,980,084	+		Xcc-8004.3046.1	0.19	+0.2
2,980,084	+		Xcc-8004.3046.1	0.19	+0.3
2,980,085	-		Xcc-8004.3046.1	0.19	-2.6
2,980,085	-		Xcc-8004.3046.1	0.19	-0.3
2,980,085	-		Xcc-8004.3046.1	0.19	-1.9
2,980,085	-		Xcc-8004.3046.1	0.19	-3.9
2,980,085	-		Xcc-8004.3046.1	0.19	-0.2
2,980,085	-		Xcc-8004.3046.1	0.19	-0.1
2,980,085	-		Xcc-8004.3046.1	0.19	-4.5
2,980,243	+		Xcc-8004.3046.1	0.27	+1.5
2,980,243	+		Xcc-8004.3046.1	0.27	+2.3
2,980,243	+		Xcc-8004.3046.1	0.27	+1.5
2,980,244	-		Xcc-8004.3046.1	0.27	-2.3
2,980,244	-		Xcc-8004.3046.1	0.27	+2.0
2,980,244	-		Xcc-8004.3046.1	0.27	-1.2
2,980,244	-		Xcc-8004.3046.1	0.27	-1.2