Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3021.1 and Xcc-8004.3022.1 are separated by 556 nucleotides Xcc-8004.3022.1 and Xcc-8004.3024.1 overlap by 4 nucleotides
Xcc-8004.3021.1: Xcc-8004.3021.1 - hypothetical protein, at 2,951,964 to 2,952,623
Xcc-8004.3021.1
Xcc-8004.3022.1: Xcc-8004.3022.1 - Putative deoxyribonuclease similar to YcfH, type 4, at 2,953,180 to 2,953,908
Xcc-8004.3022.1
Xcc-8004.3024.1: Xcc-8004.3024.1 - FIG014574: hypothetical protein, at 2,953,905 to 2,955,191
Xcc-8004.3024.1
Position (kb) 2953
2954 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 2952.411 kb on - strand, within Xcc-8004.3021.1 at 2952.411 kb on - strand, within Xcc-8004.3021.1 at 2952.433 kb on + strand, within Xcc-8004.3021.1 at 2952.434 kb on - strand, within Xcc-8004.3021.1 at 2952.523 kb on + strand, within Xcc-8004.3021.1 at 2952.545 kb on + strand, within Xcc-8004.3021.1 at 2952.545 kb on + strand, within Xcc-8004.3021.1 at 2952.546 kb on - strand, within Xcc-8004.3021.1 at 2952.546 kb on - strand, within Xcc-8004.3021.1 at 2952.546 kb on - strand, within Xcc-8004.3021.1 at 2952.548 kb on + strand, within Xcc-8004.3021.1 at 2952.549 kb on - strand, within Xcc-8004.3021.1 at 2952.549 kb on - strand, within Xcc-8004.3021.1 at 2952.596 kb on + strand at 2952.596 kb on + strand at 2952.596 kb on + strand at 2952.597 kb on - strand at 2952.597 kb on - strand at 2952.620 kb on - strand at 2952.620 kb on - strand at 2952.646 kb on + strand at 2952.678 kb on + strand at 2952.742 kb on + strand at 2952.743 kb on - strand at 2952.769 kb on + strand at 2952.769 kb on + strand at 2952.769 kb on + strand at 2952.770 kb on - strand at 2952.923 kb on + strand at 2952.923 kb on + strand at 2952.923 kb on + strand at 2952.923 kb on + strand at 2952.923 kb on + strand at 2952.924 kb on - strand at 2952.924 kb on - strand at 2952.924 kb on - strand at 2952.924 kb on - strand at 2952.924 kb on - strand at 2952.927 kb on + strand at 2952.927 kb on + strand at 2952.927 kb on + strand at 2952.927 kb on + strand at 2952.928 kb on - strand at 2952.933 kb on + strand at 2952.934 kb on - strand at 2952.977 kb on + strand at 2953.010 kb on + strand at 2953.010 kb on + strand at 2953.013 kb on + strand at 2953.013 kb on + strand at 2953.013 kb on + strand at 2953.013 kb on + strand at 2953.013 kb on + strand at 2953.013 kb on + strand at 2953.014 kb on - strand at 2953.014 kb on - strand at 2953.014 kb on - strand at 2953.014 kb on - strand at 2953.014 kb on - strand at 2953.014 kb on - strand at 2953.075 kb on + strand at 2953.151 kb on - strand at 2953.151 kb on - strand at 2953.161 kb on - strand at 2953.167 kb on + strand at 2953.181 kb on + strand at 2953.264 kb on - strand, within Xcc-8004.3022.1 at 2953.307 kb on + strand, within Xcc-8004.3022.1 at 2953.314 kb on + strand, within Xcc-8004.3022.1 at 2953.314 kb on + strand, within Xcc-8004.3022.1 at 2953.314 kb on + strand, within Xcc-8004.3022.1 at 2953.315 kb on - strand, within Xcc-8004.3022.1 at 2953.315 kb on - strand, within Xcc-8004.3022.1 at 2953.338 kb on + strand, within Xcc-8004.3022.1 at 2953.338 kb on + strand, within Xcc-8004.3022.1 at 2953.339 kb on - strand, within Xcc-8004.3022.1 at 2953.345 kb on - strand, within Xcc-8004.3022.1 at 2953.360 kb on - strand, within Xcc-8004.3022.1 at 2953.543 kb on - strand, within Xcc-8004.3022.1 at 2953.560 kb on + strand, within Xcc-8004.3022.1 at 2953.560 kb on + strand, within Xcc-8004.3022.1 at 2953.560 kb on + strand, within Xcc-8004.3022.1 at 2953.560 kb on + strand, within Xcc-8004.3022.1 at 2953.561 kb on - strand, within Xcc-8004.3022.1 at 2953.561 kb on - strand, within Xcc-8004.3022.1 at 2953.561 kb on - strand, within Xcc-8004.3022.1 at 2953.615 kb on - strand, within Xcc-8004.3022.1 at 2953.615 kb on - strand, within Xcc-8004.3022.1 at 2953.615 kb on - strand, within Xcc-8004.3022.1 at 2953.667 kb on + strand, within Xcc-8004.3022.1 at 2953.667 kb on + strand, within Xcc-8004.3022.1 at 2953.667 kb on + strand, within Xcc-8004.3022.1 at 2953.667 kb on + strand, within Xcc-8004.3022.1 at 2953.667 kb on + strand, within Xcc-8004.3022.1 at 2953.667 kb on + strand, within Xcc-8004.3022.1 at 2953.668 kb on - strand, within Xcc-8004.3022.1 at 2953.682 kb on - strand, within Xcc-8004.3022.1 at 2953.697 kb on - strand, within Xcc-8004.3022.1 at 2953.697 kb on - strand, within Xcc-8004.3022.1 at 2953.752 kb on + strand, within Xcc-8004.3022.1 at 2953.752 kb on + strand, within Xcc-8004.3022.1 at 2953.752 kb on + strand, within Xcc-8004.3022.1 at 2953.753 kb on - strand, within Xcc-8004.3022.1 at 2953.753 kb on - strand, within Xcc-8004.3022.1 at 2953.753 kb on - strand, within Xcc-8004.3022.1 at 2953.753 kb on - strand, within Xcc-8004.3022.1 at 2953.756 kb on + strand, within Xcc-8004.3022.1 at 2953.756 kb on + strand, within Xcc-8004.3022.1 at 2953.756 kb on + strand, within Xcc-8004.3022.1 at 2953.756 kb on + strand, within Xcc-8004.3022.1 at 2953.756 kb on + strand, within Xcc-8004.3022.1 at 2953.756 kb on + strand, within Xcc-8004.3022.1 at 2953.756 kb on + strand, within Xcc-8004.3022.1 at 2953.757 kb on - strand, within Xcc-8004.3022.1 at 2953.758 kb on + strand, within Xcc-8004.3022.1 at 2953.758 kb on + strand, within Xcc-8004.3022.1 at 2953.758 kb on + strand, within Xcc-8004.3022.1 at 2953.856 kb on - strand at 2953.877 kb on + strand at 2953.878 kb on - strand at 2953.878 kb on - strand at 2953.886 kb on - strand at 2953.886 kb on - strand at 2953.886 kb on - strand at 2953.959 kb on + strand at 2953.960 kb on - strand at 2953.960 kb on - strand at 2953.999 kb on + strand at 2954.000 kb on - strand at 2954.128 kb on + strand, within Xcc-8004.3024.1 at 2954.128 kb on + strand, within Xcc-8004.3024.1 at 2954.128 kb on + strand, within Xcc-8004.3024.1 at 2954.128 kb on + strand, within Xcc-8004.3024.1 at 2954.129 kb on - strand, within Xcc-8004.3024.1 at 2954.129 kb on - strand, within Xcc-8004.3024.1 at 2954.136 kb on - strand, within Xcc-8004.3024.1 at 2954.161 kb on + strand, within Xcc-8004.3024.1 at 2954.162 kb on - strand, within Xcc-8004.3024.1 at 2954.189 kb on + strand, within Xcc-8004.3024.1 at 2954.189 kb on + strand, within Xcc-8004.3024.1 at 2954.189 kb on + strand, within Xcc-8004.3024.1 at 2954.190 kb on - strand, within Xcc-8004.3024.1 at 2954.190 kb on - strand, within Xcc-8004.3024.1 at 2954.209 kb on + strand, within Xcc-8004.3024.1 at 2954.210 kb on - strand, within Xcc-8004.3024.1 at 2954.210 kb on - strand, within Xcc-8004.3024.1 at 2954.210 kb on - strand, within Xcc-8004.3024.1 at 2954.210 kb on - strand, within Xcc-8004.3024.1 at 2954.215 kb on + strand, within Xcc-8004.3024.1 at 2954.238 kb on + strand, within Xcc-8004.3024.1 at 2954.239 kb on - strand, within Xcc-8004.3024.1 at 2954.259 kb on - strand, within Xcc-8004.3024.1 at 2954.262 kb on + strand, within Xcc-8004.3024.1 at 2954.265 kb on + strand, within Xcc-8004.3024.1 at 2954.266 kb on - strand, within Xcc-8004.3024.1 at 2954.317 kb on + strand, within Xcc-8004.3024.1 at 2954.318 kb on - strand, within Xcc-8004.3024.1 at 2954.356 kb on - strand, within Xcc-8004.3024.1 at 2954.356 kb on - strand, within Xcc-8004.3024.1 at 2954.356 kb on - strand, within Xcc-8004.3024.1 at 2954.497 kb on + strand, within Xcc-8004.3024.1 at 2954.520 kb on + strand, within Xcc-8004.3024.1 at 2954.520 kb on + strand, within Xcc-8004.3024.1 at 2954.521 kb on - strand, within Xcc-8004.3024.1 at 2954.521 kb on - strand, within Xcc-8004.3024.1 at 2954.521 kb on - strand, within Xcc-8004.3024.1 at 2954.521 kb on - strand, within Xcc-8004.3024.1 at 2954.628 kb on + strand, within Xcc-8004.3024.1 at 2954.629 kb on - strand, within Xcc-8004.3024.1 at 2954.675 kb on + strand, within Xcc-8004.3024.1 at 2954.675 kb on + strand, within Xcc-8004.3024.1 at 2954.675 kb on + strand, within Xcc-8004.3024.1 at 2954.675 kb on + strand, within Xcc-8004.3024.1 at 2954.675 kb on + strand, within Xcc-8004.3024.1 at 2954.676 kb on - strand, within Xcc-8004.3024.1 at 2954.676 kb on - strand, within Xcc-8004.3024.1 at 2954.676 kb on - strand, within Xcc-8004.3024.1 at 2954.676 kb on - strand, within Xcc-8004.3024.1 at 2954.676 kb on - strand, within Xcc-8004.3024.1 at 2954.676 kb on - strand, within Xcc-8004.3024.1 at 2954.676 kb on - strand, within Xcc-8004.3024.1 at 2954.676 kb on - strand, within Xcc-8004.3024.1 at 2954.676 kb on - strand, within Xcc-8004.3024.1 at 2954.676 kb on - strand, within Xcc-8004.3024.1 at 2954.676 kb on - strand, within Xcc-8004.3024.1 at 2954.676 kb on - strand, within Xcc-8004.3024.1 at 2954.712 kb on + strand, within Xcc-8004.3024.1 at 2954.713 kb on - strand, within Xcc-8004.3024.1 at 2954.713 kb on - strand, within Xcc-8004.3024.1 at 2954.721 kb on - strand, within Xcc-8004.3024.1 at 2954.721 kb on - strand, within Xcc-8004.3024.1 at 2954.730 kb on + strand, within Xcc-8004.3024.1 at 2954.731 kb on - strand, within Xcc-8004.3024.1 at 2954.735 kb on + strand, within Xcc-8004.3024.1 at 2954.736 kb on - strand, within Xcc-8004.3024.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes) remove 2,952,411 - Xcc-8004.3021.1 0.68 -1.1 2,952,411 - Xcc-8004.3021.1 0.68 -3.2 2,952,433 + Xcc-8004.3021.1 0.71 -1.0 2,952,434 - Xcc-8004.3021.1 0.71 +0.1 2,952,523 + Xcc-8004.3021.1 0.85 -2.2 2,952,545 + Xcc-8004.3021.1 0.88 -0.8 2,952,545 + Xcc-8004.3021.1 0.88 -0.2 2,952,546 - Xcc-8004.3021.1 0.88 -2.6 2,952,546 - Xcc-8004.3021.1 0.88 -1.0 2,952,546 - Xcc-8004.3021.1 0.88 -1.4 2,952,548 + Xcc-8004.3021.1 0.88 +0.7 2,952,549 - Xcc-8004.3021.1 0.89 -0.4 2,952,549 - Xcc-8004.3021.1 0.89 -2.4 2,952,596 + +0.4 2,952,596 + +0.1 2,952,596 + -1.3 2,952,597 - +3.7 2,952,597 - +1.3 2,952,620 - +1.7 2,952,620 - -0.2 2,952,646 + +0.8 2,952,678 + +0.7 2,952,742 + +3.1 2,952,743 - +1.2 2,952,769 + -0.2 2,952,769 + -0.6 2,952,769 + -0.4 2,952,770 - +1.3 2,952,923 + +2.1 2,952,923 + +2.7 2,952,923 + +0.3 2,952,923 + -1.4 2,952,923 + -0.4 2,952,924 - +1.4 2,952,924 - -0.2 2,952,924 - +3.8 2,952,924 - +0.1 2,952,924 - -0.8 2,952,927 + +1.5 2,952,927 + -1.5 2,952,927 + -2.1 2,952,927 + +0.9 2,952,928 - -2.8 2,952,933 + +1.4 2,952,934 - +0.9 2,952,977 + +0.4 2,953,010 + +0.4 2,953,010 + -0.9 2,953,013 + +0.2 2,953,013 + +1.9 2,953,013 + -0.3 2,953,013 + -1.5 2,953,013 + -2.1 2,953,013 + +0.3 2,953,014 - +1.4 2,953,014 - -3.0 2,953,014 - +2.3 2,953,014 - +0.7 2,953,014 - +1.8 2,953,014 - +1.3 2,953,075 + +6.0 2,953,151 - -2.6 2,953,151 - -2.1 2,953,161 - +1.1 2,953,167 + +3.6 2,953,181 + -2.7 2,953,264 - Xcc-8004.3022.1 0.12 -2.6 2,953,307 + Xcc-8004.3022.1 0.17 +0.2 2,953,314 + Xcc-8004.3022.1 0.18 +0.9 2,953,314 + Xcc-8004.3022.1 0.18 +0.8 2,953,314 + Xcc-8004.3022.1 0.18 +2.4 2,953,315 - Xcc-8004.3022.1 0.19 +1.2 2,953,315 - Xcc-8004.3022.1 0.19 -0.3 2,953,338 + Xcc-8004.3022.1 0.22 -1.1 2,953,338 + Xcc-8004.3022.1 0.22 +1.4 2,953,339 - Xcc-8004.3022.1 0.22 -0.9 2,953,345 - Xcc-8004.3022.1 0.23 +0.1 2,953,360 - Xcc-8004.3022.1 0.25 -2.2 2,953,543 - Xcc-8004.3022.1 0.50 -3.3 2,953,560 + Xcc-8004.3022.1 0.52 -0.7 2,953,560 + Xcc-8004.3022.1 0.52 -0.4 2,953,560 + Xcc-8004.3022.1 0.52 +1.1 2,953,560 + Xcc-8004.3022.1 0.52 +0.7 2,953,561 - Xcc-8004.3022.1 0.52 +0.7 2,953,561 - Xcc-8004.3022.1 0.52 -3.2 2,953,561 - Xcc-8004.3022.1 0.52 +1.5 2,953,615 - Xcc-8004.3022.1 0.60 -1.0 2,953,615 - Xcc-8004.3022.1 0.60 +4.9 2,953,615 - Xcc-8004.3022.1 0.60 -3.5 2,953,667 + Xcc-8004.3022.1 0.67 -0.3 2,953,667 + Xcc-8004.3022.1 0.67 -2.5 2,953,667 + Xcc-8004.3022.1 0.67 -0.5 2,953,667 + Xcc-8004.3022.1 0.67 +0.9 2,953,667 + Xcc-8004.3022.1 0.67 +2.6 2,953,667 + Xcc-8004.3022.1 0.67 -1.8 2,953,668 - Xcc-8004.3022.1 0.67 -3.1 2,953,682 - Xcc-8004.3022.1 0.69 -0.9 2,953,697 - Xcc-8004.3022.1 0.71 +2.9 2,953,697 - Xcc-8004.3022.1 0.71 -1.1 2,953,752 + Xcc-8004.3022.1 0.78 -2.4 2,953,752 + Xcc-8004.3022.1 0.78 -0.3 2,953,752 + Xcc-8004.3022.1 0.78 -1.1 2,953,753 - Xcc-8004.3022.1 0.79 +3.3 2,953,753 - Xcc-8004.3022.1 0.79 -1.0 2,953,753 - Xcc-8004.3022.1 0.79 -0.8 2,953,753 - Xcc-8004.3022.1 0.79 +0.0 2,953,756 + Xcc-8004.3022.1 0.79 -1.2 2,953,756 + Xcc-8004.3022.1 0.79 -1.1 2,953,756 + Xcc-8004.3022.1 0.79 +1.5 2,953,756 + Xcc-8004.3022.1 0.79 -1.1 2,953,756 + Xcc-8004.3022.1 0.79 -2.3 2,953,756 + Xcc-8004.3022.1 0.79 +0.9 2,953,756 + Xcc-8004.3022.1 0.79 -1.2 2,953,757 - Xcc-8004.3022.1 0.79 -0.2 2,953,758 + Xcc-8004.3022.1 0.79 +0.1 2,953,758 + Xcc-8004.3022.1 0.79 -1.3 2,953,758 + Xcc-8004.3022.1 0.79 -1.6 2,953,856 - -0.5 2,953,877 + -1.2 2,953,878 - +0.7 2,953,878 - +0.0 2,953,886 - +2.3 2,953,886 - +5.3 2,953,886 - -0.3 2,953,959 + +0.2 2,953,960 - -1.7 2,953,960 - +2.9 2,953,999 + +1.4 2,954,000 - -0.1 2,954,128 + Xcc-8004.3024.1 0.17 +0.7 2,954,128 + Xcc-8004.3024.1 0.17 +0.4 2,954,128 + Xcc-8004.3024.1 0.17 +2.0 2,954,128 + Xcc-8004.3024.1 0.17 +0.4 2,954,129 - Xcc-8004.3024.1 0.17 -2.9 2,954,129 - Xcc-8004.3024.1 0.17 +3.3 2,954,136 - Xcc-8004.3024.1 0.18 +1.4 2,954,161 + Xcc-8004.3024.1 0.20 +0.0 2,954,162 - Xcc-8004.3024.1 0.20 +2.1 2,954,189 + Xcc-8004.3024.1 0.22 -0.4 2,954,189 + Xcc-8004.3024.1 0.22 -2.9 2,954,189 + Xcc-8004.3024.1 0.22 -2.0 2,954,190 - Xcc-8004.3024.1 0.22 -1.5 2,954,190 - Xcc-8004.3024.1 0.22 -1.3 2,954,209 + Xcc-8004.3024.1 0.24 -2.8 2,954,210 - Xcc-8004.3024.1 0.24 +0.6 2,954,210 - Xcc-8004.3024.1 0.24 -1.5 2,954,210 - Xcc-8004.3024.1 0.24 -0.6 2,954,210 - Xcc-8004.3024.1 0.24 -2.0 2,954,215 + Xcc-8004.3024.1 0.24 +0.1 2,954,238 + Xcc-8004.3024.1 0.26 -0.2 2,954,239 - Xcc-8004.3024.1 0.26 -0.2 2,954,259 - Xcc-8004.3024.1 0.28 +1.1 2,954,262 + Xcc-8004.3024.1 0.28 -0.3 2,954,265 + Xcc-8004.3024.1 0.28 -1.4 2,954,266 - Xcc-8004.3024.1 0.28 -0.9 2,954,317 + Xcc-8004.3024.1 0.32 +0.0 2,954,318 - Xcc-8004.3024.1 0.32 -0.2 2,954,356 - Xcc-8004.3024.1 0.35 +0.7 2,954,356 - Xcc-8004.3024.1 0.35 -1.1 2,954,356 - Xcc-8004.3024.1 0.35 +1.1 2,954,497 + Xcc-8004.3024.1 0.46 -0.3 2,954,520 + Xcc-8004.3024.1 0.48 -1.2 2,954,520 + Xcc-8004.3024.1 0.48 +3.3 2,954,521 - Xcc-8004.3024.1 0.48 -1.4 2,954,521 - Xcc-8004.3024.1 0.48 +2.8 2,954,521 - Xcc-8004.3024.1 0.48 -2.4 2,954,521 - Xcc-8004.3024.1 0.48 +0.4 2,954,628 + Xcc-8004.3024.1 0.56 -0.6 2,954,629 - Xcc-8004.3024.1 0.56 -0.3 2,954,675 + Xcc-8004.3024.1 0.60 -0.5 2,954,675 + Xcc-8004.3024.1 0.60 -1.0 2,954,675 + Xcc-8004.3024.1 0.60 -1.2 2,954,675 + Xcc-8004.3024.1 0.60 +1.4 2,954,675 + Xcc-8004.3024.1 0.60 -1.5 2,954,676 - Xcc-8004.3024.1 0.60 +0.3 2,954,676 - Xcc-8004.3024.1 0.60 -1.8 2,954,676 - Xcc-8004.3024.1 0.60 -1.2 2,954,676 - Xcc-8004.3024.1 0.60 -0.5 2,954,676 - Xcc-8004.3024.1 0.60 +0.4 2,954,676 - Xcc-8004.3024.1 0.60 -1.3 2,954,676 - Xcc-8004.3024.1 0.60 -1.4 2,954,676 - Xcc-8004.3024.1 0.60 -1.4 2,954,676 - Xcc-8004.3024.1 0.60 +0.1 2,954,676 - Xcc-8004.3024.1 0.60 +0.6 2,954,676 - Xcc-8004.3024.1 0.60 -3.0 2,954,676 - Xcc-8004.3024.1 0.60 -1.1 2,954,712 + Xcc-8004.3024.1 0.63 -0.4 2,954,713 - Xcc-8004.3024.1 0.63 -1.9 2,954,713 - Xcc-8004.3024.1 0.63 +0.5 2,954,721 - Xcc-8004.3024.1 0.63 +0.8 2,954,721 - Xcc-8004.3024.1 0.63 +1.6 2,954,730 + Xcc-8004.3024.1 0.64 -0.6 2,954,731 - Xcc-8004.3024.1 0.64 -1.2 2,954,735 + Xcc-8004.3024.1 0.64 +1.9 2,954,736 - Xcc-8004.3024.1 0.65 -1.0
Or see this region's nucleotide sequence