Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2928.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2927.1 and Xcc-8004.2928.1 overlap by 4 nucleotidesXcc-8004.2928.1 and Xcc-8004.2929.1 are separated by 34 nucleotides Xcc-8004.2927.1: Xcc-8004.2927.1 - FIG01210489: hypothetical protein, at 2,850,817 to 2,852,682 Xcc-8004.2927.1 Xcc-8004.2928.1: Xcc-8004.2928.1 - FIG01210777: hypothetical protein, at 2,852,679 to 2,852,972 Xcc-8004.2928.1 Xcc-8004.2929.1: Xcc-8004.2929.1 - D-2-hydroxyglutarate dehydrogenase, at 2,853,007 to 2,854,425 Xcc-8004.2929.1 Position (kb) 2852 2853Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2851.691 kb on + strand, within Xcc-8004.2927.1at 2851.692 kb on - strand, within Xcc-8004.2927.1at 2851.692 kb on - strand, within Xcc-8004.2927.1at 2851.692 kb on - strand, within Xcc-8004.2927.1at 2851.692 kb on - strand, within Xcc-8004.2927.1at 2851.692 kb on - strand, within Xcc-8004.2927.1at 2851.692 kb on - strand, within Xcc-8004.2927.1at 2851.931 kb on + strand, within Xcc-8004.2927.1at 2851.931 kb on + strand, within Xcc-8004.2927.1at 2851.932 kb on - strand, within Xcc-8004.2927.1at 2851.932 kb on - strand, within Xcc-8004.2927.1at 2851.932 kb on - strand, within Xcc-8004.2927.1at 2851.932 kb on - strand, within Xcc-8004.2927.1at 2851.932 kb on - strand, within Xcc-8004.2927.1at 2851.932 kb on - strand, within Xcc-8004.2927.1at 2851.943 kb on + strand, within Xcc-8004.2927.1at 2851.944 kb on - strand, within Xcc-8004.2927.1at 2851.944 kb on - strand, within Xcc-8004.2927.1at 2851.944 kb on - strand, within Xcc-8004.2927.1at 2851.944 kb on - strand, within Xcc-8004.2927.1at 2851.944 kb on - strand, within Xcc-8004.2927.1at 2852.006 kb on + strand, within Xcc-8004.2927.1at 2852.006 kb on + strand, within Xcc-8004.2927.1at 2852.051 kb on - strand, within Xcc-8004.2927.1at 2852.096 kb on + strand, within Xcc-8004.2927.1at 2852.096 kb on + strand, within Xcc-8004.2927.1at 2852.096 kb on + strand, within Xcc-8004.2927.1at 2852.096 kb on + strand, within Xcc-8004.2927.1at 2852.096 kb on + strand, within Xcc-8004.2927.1at 2852.114 kb on + strand, within Xcc-8004.2927.1at 2852.114 kb on + strand, within Xcc-8004.2927.1at 2852.114 kb on + strand, within Xcc-8004.2927.1at 2852.115 kb on - strand, within Xcc-8004.2927.1at 2852.115 kb on - strand, within Xcc-8004.2927.1at 2852.115 kb on - strand, within Xcc-8004.2927.1at 2852.115 kb on - strand, within Xcc-8004.2927.1at 2852.115 kb on - strand, within Xcc-8004.2927.1at 2852.151 kb on + strand, within Xcc-8004.2927.1at 2852.151 kb on + strand, within Xcc-8004.2927.1at 2852.152 kb on - strand, within Xcc-8004.2927.1at 2852.163 kb on - strand, within Xcc-8004.2927.1at 2852.163 kb on - strand, within Xcc-8004.2927.1at 2852.858 kb on + strand, within Xcc-8004.2928.1at 2852.858 kb on + strand, within Xcc-8004.2928.1at 2852.859 kb on - strand, within Xcc-8004.2928.1at 2852.859 kb on - strand, within Xcc-8004.2928.1at 2852.859 kb on - strand, within Xcc-8004.2928.1at 2852.859 kb on - strand, within Xcc-8004.2928.1at 2852.859 kb on - strand, within Xcc-8004.2928.1at 2852.859 kb on - strand, within Xcc-8004.2928.1at 2853.288 kb on + strand, within Xcc-8004.2929.1at 2853.288 kb on + strand, within Xcc-8004.2929.1at 2853.288 kb on + strand, within Xcc-8004.2929.1at 2853.288 kb on + strand, within Xcc-8004.2929.1at 2853.289 kb on - strand, within Xcc-8004.2929.1at 2853.289 kb on - strand, within Xcc-8004.2929.1at 2853.289 kb on - strand, within Xcc-8004.2929.1at 2853.289 kb on - strand, within Xcc-8004.2929.1at 2853.420 kb on - strand, within Xcc-8004.2929.1at 2853.602 kb on + strand, within Xcc-8004.2929.1at 2853.602 kb on + strand, within Xcc-8004.2929.1at 2853.602 kb on + strand, within Xcc-8004.2929.1at 2853.603 kb on - strand, within Xcc-8004.2929.1at 2853.603 kb on - strand, within Xcc-8004.2929.1at 2853.603 kb on - strand, within Xcc-8004.2929.1at 2853.603 kb on - strand, within Xcc-8004.2929.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes)
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2,851,691 + Xcc-8004.2927.1 0.47 +1.4
2,851,692 - Xcc-8004.2927.1 0.47 +2.6
2,851,692 - Xcc-8004.2927.1 0.47 +2.4
2,851,692 - Xcc-8004.2927.1 0.47 +1.8
2,851,692 - Xcc-8004.2927.1 0.47 -0.7
2,851,692 - Xcc-8004.2927.1 0.47 -1.5
2,851,692 - Xcc-8004.2927.1 0.47 +1.1
2,851,931 + Xcc-8004.2927.1 0.60 -1.5
2,851,931 + Xcc-8004.2927.1 0.60 +1.9
2,851,932 - Xcc-8004.2927.1 0.60 -0.8
2,851,932 - Xcc-8004.2927.1 0.60 -2.8
2,851,932 - Xcc-8004.2927.1 0.60 -2.2
2,851,932 - Xcc-8004.2927.1 0.60 -1.6
2,851,932 - Xcc-8004.2927.1 0.60 -1.4
2,851,932 - Xcc-8004.2927.1 0.60 +2.1
2,851,943 + Xcc-8004.2927.1 0.60 -0.3
2,851,944 - Xcc-8004.2927.1 0.60 +1.7
2,851,944 - Xcc-8004.2927.1 0.60 -0.9
2,851,944 - Xcc-8004.2927.1 0.60 +1.3
2,851,944 - Xcc-8004.2927.1 0.60 +2.4
2,851,944 - Xcc-8004.2927.1 0.60 +0.2
2,852,006 + Xcc-8004.2927.1 0.64 -0.6
2,852,006 + Xcc-8004.2927.1 0.64 +0.0
2,852,051 - Xcc-8004.2927.1 0.66 +0.3
2,852,096 + Xcc-8004.2927.1 0.69 -0.1
2,852,096 + Xcc-8004.2927.1 0.69 -3.5
2,852,096 + Xcc-8004.2927.1 0.69 +0.8
2,852,096 + Xcc-8004.2927.1 0.69 -3.1
2,852,096 + Xcc-8004.2927.1 0.69 -2.7
2,852,114 + Xcc-8004.2927.1 0.70 +0.7
2,852,114 + Xcc-8004.2927.1 0.70 +0.1
2,852,114 + Xcc-8004.2927.1 0.70 -0.3
2,852,115 - Xcc-8004.2927.1 0.70 -0.7
2,852,115 - Xcc-8004.2927.1 0.70 -0.0
2,852,115 - Xcc-8004.2927.1 0.70 -1.4
2,852,115 - Xcc-8004.2927.1 0.70 +0.4
2,852,115 - Xcc-8004.2927.1 0.70 -1.0
2,852,151 + Xcc-8004.2927.1 0.71 -0.0
2,852,151 + Xcc-8004.2927.1 0.71 +0.4
2,852,152 - Xcc-8004.2927.1 0.72 -0.0
2,852,163 - Xcc-8004.2927.1 0.72 +1.2
2,852,163 - Xcc-8004.2927.1 0.72 +0.5
2,852,858 + Xcc-8004.2928.1 0.61 +0.4
2,852,858 + Xcc-8004.2928.1 0.61 -0.9
2,852,859 - Xcc-8004.2928.1 0.61 -0.6
2,852,859 - Xcc-8004.2928.1 0.61 +2.7
2,852,859 - Xcc-8004.2928.1 0.61 -0.3
2,852,859 - Xcc-8004.2928.1 0.61 -1.1
2,852,859 - Xcc-8004.2928.1 0.61 -1.9
2,852,859 - Xcc-8004.2928.1 0.61 -1.2
2,853,288 + Xcc-8004.2929.1 0.20 -0.7
2,853,288 + Xcc-8004.2929.1 0.20 -1.0
2,853,288 + Xcc-8004.2929.1 0.20 -3.2
2,853,288 + Xcc-8004.2929.1 0.20 +1.4
2,853,289 - Xcc-8004.2929.1 0.20 -1.2
2,853,289 - Xcc-8004.2929.1 0.20 -3.0
2,853,289 - Xcc-8004.2929.1 0.20 +2.7
2,853,289 - Xcc-8004.2929.1 0.20 -3.3
2,853,420 - Xcc-8004.2929.1 0.29 -2.6
2,853,602 + Xcc-8004.2929.1 0.42 -3.1
2,853,602 + Xcc-8004.2929.1 0.42 -0.2
2,853,602 + Xcc-8004.2929.1 0.42 -3.3
2,853,603 - Xcc-8004.2929.1 0.42 -2.5
2,853,603 - Xcc-8004.2929.1 0.42 -1.2
2,853,603 - Xcc-8004.2929.1 0.42 -3.3
2,853,603 - Xcc-8004.2929.1 0.42 -2.3

Or see this region's nucleotide sequence