Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2782.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylemvessel barcodes Location 3 6 dpi (25 plantes)
2,694,648	+		Xcc-8004.2781.1	0.30	+1.5
2,694,648	+		Xcc-8004.2781.1	0.30	-0.7
2,694,648	+		Xcc-8004.2781.1	0.30	-0.7
2,694,649	-		Xcc-8004.2781.1	0.30	+1.8
2,694,649	-		Xcc-8004.2781.1	0.30	+0.6
2,694,649	-		Xcc-8004.2781.1	0.30	+3.1
2,694,649	-		Xcc-8004.2781.1	0.30	-0.3
2,694,824	+		Xcc-8004.2781.1	0.45	+0.0
2,694,824	+		Xcc-8004.2781.1	0.45	-1.4
2,694,824	+		Xcc-8004.2781.1	0.45	-1.8
2,694,824	+		Xcc-8004.2781.1	0.45	-0.2
2,694,824	+		Xcc-8004.2781.1	0.45	+1.0
2,694,824	+		Xcc-8004.2781.1	0.45	-0.9
2,694,824	+		Xcc-8004.2781.1	0.45	-0.3
2,694,824	+		Xcc-8004.2781.1	0.45	-0.4
2,694,824	+		Xcc-8004.2781.1	0.45	-1.0
2,694,824	+		Xcc-8004.2781.1	0.45	-2.0
2,694,824	+		Xcc-8004.2781.1	0.45	-1.5
2,694,824	+		Xcc-8004.2781.1	0.45	+0.0
2,694,824	+		Xcc-8004.2781.1	0.45	-0.7
2,694,824	+		Xcc-8004.2781.1	0.45	-1.0
2,694,825	-		Xcc-8004.2781.1	0.45	+0.4
2,694,825	-		Xcc-8004.2781.1	0.45	-2.6
2,694,825	-		Xcc-8004.2781.1	0.45	-1.0
2,694,825	-		Xcc-8004.2781.1	0.45	+0.1
2,694,825	-		Xcc-8004.2781.1	0.45	+0.3
2,694,825	-		Xcc-8004.2781.1	0.45	+1.0
2,694,825	-		Xcc-8004.2781.1	0.45	-0.4
2,694,825	-		Xcc-8004.2781.1	0.45	+0.8
2,694,854	+		Xcc-8004.2781.1	0.47	+1.6
2,694,855	-		Xcc-8004.2781.1	0.47	+2.3
2,694,890	+		Xcc-8004.2781.1	0.50	+1.5
2,694,890	+		Xcc-8004.2781.1	0.50	-1.0
2,694,890	+		Xcc-8004.2781.1	0.50	+0.1
2,694,890	+		Xcc-8004.2781.1	0.50	+0.7
2,694,890	+		Xcc-8004.2781.1	0.50	-0.9
2,694,890	+		Xcc-8004.2781.1	0.50	-2.3
2,694,890	+		Xcc-8004.2781.1	0.50	+1.9
2,694,890	+		Xcc-8004.2781.1	0.50	+1.6
2,694,891	-		Xcc-8004.2781.1	0.50	+2.5
2,694,891	-		Xcc-8004.2781.1	0.50	-1.0
2,694,891	-		Xcc-8004.2781.1	0.50	+1.3
2,694,891	-		Xcc-8004.2781.1	0.50	-0.3
2,694,891	-		Xcc-8004.2781.1	0.50	-3.6
2,694,935	+		Xcc-8004.2781.1	0.54	-0.6
2,694,935	+		Xcc-8004.2781.1	0.54	+0.5
2,694,935	+		Xcc-8004.2781.1	0.54	+0.1
2,694,935	+		Xcc-8004.2781.1	0.54	-2.3
2,694,935	+		Xcc-8004.2781.1	0.54	+0.5
2,694,935	+		Xcc-8004.2781.1	0.54	+1.5
2,694,935	+		Xcc-8004.2781.1	0.54	-1.3
2,694,935	+		Xcc-8004.2781.1	0.54	+0.2
2,694,935	+		Xcc-8004.2781.1	0.54	+0.3
2,694,935	+		Xcc-8004.2781.1	0.54	-2.8
2,694,935	+		Xcc-8004.2781.1	0.54	+0.7
2,694,935	+		Xcc-8004.2781.1	0.54	+1.2
2,694,936	-		Xcc-8004.2781.1	0.54	-3.1
2,694,936	-		Xcc-8004.2781.1	0.54	-1.7
2,694,936	-		Xcc-8004.2781.1	0.54	+1.3
2,694,936	-		Xcc-8004.2781.1	0.54	-1.8
2,694,936	-		Xcc-8004.2781.1	0.54	-0.7
2,694,936	-		Xcc-8004.2781.1	0.54	-1.1
2,694,936	-		Xcc-8004.2781.1	0.54	+2.0
2,694,936	-		Xcc-8004.2781.1	0.54	+0.6
2,694,936	-		Xcc-8004.2781.1	0.54	-0.8
2,694,936	-		Xcc-8004.2781.1	0.54	-2.4
2,694,936	-		Xcc-8004.2781.1	0.54	-0.1
2,694,936	-		Xcc-8004.2781.1	0.54	-0.3
2,694,936	-		Xcc-8004.2781.1	0.54	-1.5
2,694,936	-		Xcc-8004.2781.1	0.54	-0.8
2,694,936	-		Xcc-8004.2781.1	0.54	-1.1
2,695,097	+		Xcc-8004.2781.1	0.67	-0.7
2,695,098	-		Xcc-8004.2781.1	0.67	+0.4
2,695,139	+		Xcc-8004.2781.1	0.70	+2.3
2,695,199	+		Xcc-8004.2781.1	0.75	-1.5
2,695,200	-		Xcc-8004.2781.1	0.75	+3.1
2,695,301	+		Xcc-8004.2781.1	0.84	-1.7
2,695,301	+		Xcc-8004.2781.1	0.84	-2.1
2,695,301	+		Xcc-8004.2781.1	0.84	+0.3
2,695,301	+		Xcc-8004.2781.1	0.84	+1.2
2,695,301	+		Xcc-8004.2781.1	0.84	+0.7
2,695,302	-		Xcc-8004.2781.1	0.84	+2.4
2,695,302	-		Xcc-8004.2781.1	0.84	-0.1
2,695,302	-		Xcc-8004.2781.1	0.84	+2.6
2,695,302	-		Xcc-8004.2781.1	0.84	-1.8
2,695,302	-		Xcc-8004.2781.1	0.84	+0.9
2,695,302	-		Xcc-8004.2781.1	0.84	+2.1
2,695,302	-		Xcc-8004.2781.1	0.84	-2.1
2,695,430	-				-0.7
2,695,430	-				+1.0
2,695,430	-				+0.1
2,695,430	-				+0.5
2,695,430	-				+0.2
2,695,492	+				+0.5
2,695,492	+				+0.1
2,695,492	+				+0.1
2,695,492	+				+0.1
2,695,493	-				+0.7
2,695,493	-				-2.9
2,695,493	-				-2.4
2,695,493	-				+1.7
2,695,493	-				-0.4
2,695,499	+				-0.1
2,695,499	+				-2.4
2,695,500	-				-0.2
2,695,500	-				+0.3
2,695,500	-				+0.6
2,695,526	+				+4.1
2,695,527	-				-1.7
2,695,536	+				+2.4
2,695,536	+				+0.2
2,695,536	+				-2.1
2,695,536	+				+0.3
2,695,536	+				+2.3
2,695,536	+				+0.3
2,695,537	-				+1.6
2,695,537	-				-0.8
2,695,537	-				-1.1
2,695,537	-				-0.1
2,695,537	-				-1.7
2,695,537	-				-0.4
2,695,571	+				-1.7
2,695,660	+				-0.1
2,695,660	+				-1.8
2,695,661	-				+0.3
2,695,661	-				+0.8
2,695,661	-				-0.6
2,695,661	-				-1.5
2,695,661	-				-0.4
2,695,661	-				-4.2
2,695,661	-				-1.3
2,695,735	-		Xcc-8004.2782.1	0.12	+1.2
2,695,939	+		Xcc-8004.2782.1	0.39	-0.8
2,695,939	+		Xcc-8004.2782.1	0.39	+0.5
2,695,939	+		Xcc-8004.2782.1	0.39	+0.0
2,695,939	+		Xcc-8004.2782.1	0.39	+1.6
2,695,939	+		Xcc-8004.2782.1	0.39	+1.3
2,695,939	+		Xcc-8004.2782.1	0.39	+0.7
2,695,948	-		Xcc-8004.2782.1	0.40	+1.7
2,696,193	+		Xcc-8004.2782.1	0.72	+0.6
2,696,193	+		Xcc-8004.2782.1	0.72	-0.5
2,696,193	+		Xcc-8004.2782.1	0.72	+1.1
2,696,193	+		Xcc-8004.2782.1	0.72	+0.0
2,696,194	-		Xcc-8004.2782.1	0.73	-2.3
2,696,194	-		Xcc-8004.2782.1	0.73	+0.5
2,696,194	-		Xcc-8004.2782.1	0.73	+0.9
2,696,544	+				+0.2
2,696,544	+				-1.1
2,696,544	+				-1.0
2,696,544	+				+3.4
2,696,545	-				+0.0
2,696,663	+				-1.1
2,696,663	+				+0.1
2,696,663	+				-0.7
2,696,664	-				-1.6
2,696,732	-				-1.1
2,696,732	-				+0.0
2,696,732	-				-1.3
2,696,732	-				-0.8
2,696,732	-				+1.8
2,696,732	-				+0.6
2,696,732	-				-0.1
2,696,732	-				+0.3
2,696,826	+		Xcc-8004.2783.1	0.49	+0.6
2,696,827	-		Xcc-8004.2783.1	0.50	-0.3
2,696,827	-		Xcc-8004.2783.1	0.50	-1.5
2,696,844	+		Xcc-8004.2783.1	0.60	+2.9
2,696,845	-		Xcc-8004.2783.1	0.61	+1.3
2,697,003	+				-1.7
2,697,004	-				-1.0
2,697,004	-				+0.1
2,697,004	-				+1.0
2,697,148	+				-0.7
2,697,148	+				-0.5
2,697,303	+				-1.8
2,697,303	+				-2.6
2,697,303	+				+1.8
2,697,303	+				+0.7
2,697,303	+				+1.3
2,697,303	+				+5.5
2,697,303	+				+1.2
2,697,303	+				+2.6
2,697,303	+				-1.8
2,697,303	+				-2.4
2,697,303	+				-2.1
2,697,303	+				+0.3
2,697,303	+				+0.7
2,697,303	+				+1.1
2,697,303	+				-0.7
2,697,303	+				-3.4
2,697,303	+				-0.9
2,697,303	+				-1.6
2,697,304	-				-2.3
2,697,304	-				-4.1
2,697,304	-				-0.3
2,697,304	-				-0.4
2,697,304	-				-1.4
2,697,304	-				+3.4
2,697,304	-				+0.9
2,697,304	-				-0.1
2,697,304	-				+0.9
2,697,304	-				-0.7
2,697,304	-				-1.7
2,697,304	-				+0.9
2,697,304	-				+1.4
2,697,304	-				+0.6
2,697,304	-				-1.8
2,697,304	-				-2.5
2,697,305	+				+1.3
2,697,305	+				+3.2
2,697,305	+				-2.2
2,697,305	+				+0.2
2,697,306	-				-2.6
2,697,306	-				+2.9
2,697,306	-				+0.1
2,697,306	-				+2.6
2,697,306	-				+0.9