Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.274.1 and Xcc-8004.275.1 are separated by 45 nucleotides Xcc-8004.275.1 and Xcc-8004.276.1 overlap by 16 nucleotides Xcc-8004.276.1 and Xcc-8004.277.1 are separated by 9 nucleotides Xcc-8004.277.1 and Xcc-8004.278.1 are separated by 54 nucleotides Xcc-8004.278.1 and Xcc-8004.279.1 are separated by 386 nucleotides
Xcc-8004.274.1: Xcc-8004.274.1 - Pyruvate oxidase [ubiquinone, cytochrome] (EC 1.2.2.2), at 263,769 to 265,496
Xcc-8004.274.1
Xcc-8004.275.1: Xcc-8004.275.1 - Two-component system sensor protein, at 265,542 to 265,796
Xcc-8004.275.1
Xcc-8004.276.1: Xcc-8004.276.1 - MFS transporter, at 265,781 to 266,110
Xcc-8004.276.1
Xcc-8004.277.1: Xcc-8004.277.1 - tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207), at 266,120 to 266,596
Xcc-8004.277.1
Xcc-8004.278.1: Xcc-8004.278.1 - FIG01210164: hypothetical protein, at 266,651 to 267,109
Xcc-8004.278.1
Xcc-8004.279.1: Xcc-8004.279.1 - FIG01210420: hypothetical protein, at 267,496 to 267,816
Xcc-8004.279.1
Position (kb) 266
267 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 265.204 kb on - strand, within Xcc-8004.274.1 at 265.425 kb on + strand at 265.425 kb on + strand at 265.425 kb on + strand at 265.425 kb on + strand at 265.425 kb on + strand at 265.425 kb on + strand at 265.426 kb on - strand at 265.426 kb on - strand at 265.426 kb on - strand at 265.623 kb on + strand, within Xcc-8004.275.1 at 265.623 kb on + strand, within Xcc-8004.275.1 at 265.623 kb on + strand, within Xcc-8004.275.1 at 265.623 kb on + strand, within Xcc-8004.275.1 at 265.624 kb on - strand, within Xcc-8004.275.1 at 265.624 kb on - strand, within Xcc-8004.275.1 at 265.624 kb on - strand, within Xcc-8004.275.1 at 265.624 kb on - strand, within Xcc-8004.275.1 at 265.632 kb on + strand, within Xcc-8004.275.1 at 265.632 kb on + strand, within Xcc-8004.275.1 at 265.632 kb on + strand, within Xcc-8004.275.1 at 265.633 kb on - strand, within Xcc-8004.275.1 at 265.633 kb on - strand, within Xcc-8004.275.1 at 265.710 kb on + strand, within Xcc-8004.275.1 at 265.710 kb on + strand, within Xcc-8004.275.1 at 265.710 kb on + strand, within Xcc-8004.275.1 at 265.711 kb on - strand, within Xcc-8004.275.1 at 265.711 kb on - strand, within Xcc-8004.275.1 at 266.122 kb on - strand at 266.122 kb on - strand at 266.328 kb on + strand, within Xcc-8004.277.1 at 266.328 kb on + strand, within Xcc-8004.277.1 at 266.328 kb on + strand, within Xcc-8004.277.1 at 266.329 kb on - strand, within Xcc-8004.277.1 at 266.329 kb on - strand, within Xcc-8004.277.1 at 266.329 kb on - strand, within Xcc-8004.277.1 at 266.424 kb on + strand, within Xcc-8004.277.1 at 266.425 kb on - strand, within Xcc-8004.277.1 at 266.433 kb on + strand, within Xcc-8004.277.1 at 266.434 kb on - strand, within Xcc-8004.277.1 at 266.434 kb on - strand, within Xcc-8004.277.1 at 266.513 kb on - strand, within Xcc-8004.277.1 at 266.513 kb on - strand, within Xcc-8004.277.1 at 266.607 kb on + strand at 266.607 kb on + strand at 266.607 kb on + strand at 266.607 kb on + strand at 266.607 kb on + strand at 266.607 kb on + strand at 266.607 kb on + strand at 266.608 kb on - strand at 266.608 kb on - strand at 266.608 kb on - strand at 266.608 kb on - strand at 266.608 kb on - strand at 266.608 kb on - strand at 266.652 kb on + strand at 266.652 kb on + strand at 266.652 kb on + strand at 266.652 kb on + strand at 266.652 kb on + strand at 266.652 kb on + strand at 266.653 kb on - strand at 266.803 kb on + strand, within Xcc-8004.278.1 at 266.803 kb on + strand, within Xcc-8004.278.1 at 267.198 kb on + strand at 267.220 kb on + strand at 267.285 kb on + strand at 267.285 kb on + strand at 267.285 kb on + strand at 267.286 kb on - strand at 267.286 kb on - strand at 267.286 kb on - strand at 267.429 kb on + strand at 267.439 kb on + strand at 267.458 kb on + strand at 267.458 kb on + strand at 267.459 kb on - strand at 267.459 kb on - strand at 267.459 kb on - strand at 267.459 kb on - strand at 267.459 kb on - strand at 267.495 kb on + strand at 267.495 kb on + strand at 267.495 kb on + strand at 267.495 kb on + strand at 267.495 kb on + strand at 267.495 kb on + strand at 267.495 kb on + strand at 267.495 kb on + strand at 267.495 kb on + strand at 267.496 kb on - strand at 267.496 kb on - strand at 267.496 kb on - strand at 267.496 kb on - strand at 267.496 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes) remove 265,204 - Xcc-8004.274.1 0.83 -0.1 265,425 + -1.1 265,425 + -1.4 265,425 + +0.7 265,425 + -3.0 265,425 + -1.5 265,425 + -0.5 265,426 - -0.4 265,426 - +0.2 265,426 - +0.4 265,623 + Xcc-8004.275.1 0.32 +0.2 265,623 + Xcc-8004.275.1 0.32 -0.3 265,623 + Xcc-8004.275.1 0.32 -2.5 265,623 + Xcc-8004.275.1 0.32 -3.0 265,624 - Xcc-8004.275.1 0.32 +1.5 265,624 - Xcc-8004.275.1 0.32 -0.9 265,624 - Xcc-8004.275.1 0.32 +0.1 265,624 - Xcc-8004.275.1 0.32 -3.5 265,632 + Xcc-8004.275.1 0.35 -1.8 265,632 + Xcc-8004.275.1 0.35 -0.1 265,632 + Xcc-8004.275.1 0.35 +1.0 265,633 - Xcc-8004.275.1 0.36 +0.2 265,633 - Xcc-8004.275.1 0.36 +3.1 265,710 + Xcc-8004.275.1 0.66 +1.5 265,710 + Xcc-8004.275.1 0.66 +2.3 265,710 + Xcc-8004.275.1 0.66 -1.8 265,711 - Xcc-8004.275.1 0.66 -0.2 265,711 - Xcc-8004.275.1 0.66 -1.4 266,122 - +2.7 266,122 - -0.1 266,328 + Xcc-8004.277.1 0.44 -2.4 266,328 + Xcc-8004.277.1 0.44 -2.3 266,328 + Xcc-8004.277.1 0.44 -1.3 266,329 - Xcc-8004.277.1 0.44 -2.9 266,329 - Xcc-8004.277.1 0.44 -1.1 266,329 - Xcc-8004.277.1 0.44 +0.0 266,424 + Xcc-8004.277.1 0.64 +1.1 266,425 - Xcc-8004.277.1 0.64 -1.6 266,433 + Xcc-8004.277.1 0.66 -1.1 266,434 - Xcc-8004.277.1 0.66 -1.5 266,434 - Xcc-8004.277.1 0.66 +1.6 266,513 - Xcc-8004.277.1 0.82 -0.5 266,513 - Xcc-8004.277.1 0.82 -0.6 266,607 + -2.0 266,607 + +0.5 266,607 + +2.1 266,607 + -4.1 266,607 + -0.2 266,607 + +0.0 266,607 + -3.3 266,608 - -0.4 266,608 - +0.5 266,608 - -2.5 266,608 - +0.4 266,608 - +0.2 266,608 - +0.6 266,652 + +1.2 266,652 + +0.8 266,652 + +0.6 266,652 + +0.9 266,652 + -0.7 266,652 + +0.3 266,653 - -1.3 266,803 + Xcc-8004.278.1 0.33 -0.3 266,803 + Xcc-8004.278.1 0.33 +1.3 267,198 + -2.0 267,220 + +0.7 267,285 + -2.2 267,285 + +0.6 267,285 + +2.1 267,286 - -1.7 267,286 - -1.3 267,286 - +1.1 267,429 + -1.3 267,439 + -2.9 267,458 + +0.7 267,458 + -0.2 267,459 - +1.1 267,459 - +3.9 267,459 - +0.8 267,459 - -1.9 267,459 - -0.1 267,495 + -1.2 267,495 + -2.3 267,495 + -0.8 267,495 + -2.2 267,495 + -0.4 267,495 + -0.5 267,495 + -0.8 267,495 + +0.7 267,495 + +4.2 267,496 - -2.4 267,496 - -1.1 267,496 - -1.3 267,496 - +0.1 267,496 - -2.2
Or see this region's nucleotide sequence