Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2673.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylemvessel barcodes Location 3 6 dpi (25 plantes)
2,572,525	+				+0.4
2,572,525	+				+0.2
2,572,526	-				-2.1
2,572,526	-				+0.4
2,572,526	-				-0.4
2,572,526	-				+1.1
2,572,600	-		Xcc-8004.2671.1	0.12	+2.3
2,572,600	-		Xcc-8004.2671.1	0.12	-1.6
2,572,600	-		Xcc-8004.2671.1	0.12	+3.3
2,572,600	-		Xcc-8004.2671.1	0.12	-0.8
2,572,649	+		Xcc-8004.2671.1	0.20	-1.6
2,572,649	+		Xcc-8004.2671.1	0.20	-0.3
2,572,650	-		Xcc-8004.2671.1	0.21	+0.1
2,572,650	-		Xcc-8004.2671.1	0.21	+2.3
2,572,651	+		Xcc-8004.2671.1	0.21	-0.5
2,572,651	+		Xcc-8004.2671.1	0.21	-0.5
2,572,651	+		Xcc-8004.2671.1	0.21	+1.5
2,572,651	+		Xcc-8004.2671.1	0.21	-0.6
2,572,651	+		Xcc-8004.2671.1	0.21	-0.3
2,572,651	+		Xcc-8004.2671.1	0.21	+3.5
2,572,651	+		Xcc-8004.2671.1	0.21	+0.1
2,572,651	+		Xcc-8004.2671.1	0.21	+4.8
2,572,651	+		Xcc-8004.2671.1	0.21	+2.8
2,572,651	+		Xcc-8004.2671.1	0.21	-1.5
2,572,652	-		Xcc-8004.2671.1	0.21	+3.1
2,572,652	-		Xcc-8004.2671.1	0.21	-0.3
2,572,652	-		Xcc-8004.2671.1	0.21	+2.2
2,572,652	-		Xcc-8004.2671.1	0.21	+0.8
2,572,652	-		Xcc-8004.2671.1	0.21	-0.8
2,572,652	-		Xcc-8004.2671.1	0.21	-2.2
2,572,652	-		Xcc-8004.2671.1	0.21	+0.3
2,572,652	-		Xcc-8004.2671.1	0.21	-0.6
2,572,652	-		Xcc-8004.2671.1	0.21	+0.7
2,572,652	-		Xcc-8004.2671.1	0.21	-0.7
2,572,678	+		Xcc-8004.2671.1	0.25	-0.7
2,572,678	+		Xcc-8004.2671.1	0.25	-0.1
2,572,678	+		Xcc-8004.2671.1	0.25	+2.0
2,572,678	+		Xcc-8004.2671.1	0.25	-1.9
2,572,678	+		Xcc-8004.2671.1	0.25	-0.5
2,572,678	+		Xcc-8004.2671.1	0.25	-2.3
2,572,679	-		Xcc-8004.2671.1	0.25	+0.6
2,572,679	-		Xcc-8004.2671.1	0.25	-2.3
2,572,679	-		Xcc-8004.2671.1	0.25	-1.1
2,572,679	-		Xcc-8004.2671.1	0.25	-0.1
2,572,679	-		Xcc-8004.2671.1	0.25	-3.6
2,572,679	-		Xcc-8004.2671.1	0.25	-0.7
2,572,679	-		Xcc-8004.2671.1	0.25	-3.1
2,572,679	-		Xcc-8004.2671.1	0.25	-2.9
2,572,694	+		Xcc-8004.2671.1	0.28	-3.2
2,572,694	+		Xcc-8004.2671.1	0.28	+0.5
2,572,695	-		Xcc-8004.2671.1	0.28	-2.2
2,572,695	-		Xcc-8004.2671.1	0.28	+1.3
2,572,695	-		Xcc-8004.2671.1	0.28	+1.2
2,572,695	-		Xcc-8004.2671.1	0.28	-2.5
2,572,765	+		Xcc-8004.2671.1	0.39	+0.5
2,572,765	+		Xcc-8004.2671.1	0.39	+2.0
2,572,765	+		Xcc-8004.2671.1	0.39	-1.7
2,572,765	+		Xcc-8004.2671.1	0.39	+2.5
2,572,766	-		Xcc-8004.2671.1	0.40	-1.0
2,572,766	-		Xcc-8004.2671.1	0.40	+0.3
2,572,766	-		Xcc-8004.2671.1	0.40	-0.7
2,572,973	+		Xcc-8004.2671.1	0.73	-0.3
2,572,973	+		Xcc-8004.2671.1	0.73	+0.1
2,572,973	+		Xcc-8004.2671.1	0.73	+0.6
2,572,974	-		Xcc-8004.2671.1	0.74	-2.4
2,572,984	+		Xcc-8004.2671.1	0.75	+1.6
2,572,984	+		Xcc-8004.2671.1	0.75	-0.3
2,572,985	-		Xcc-8004.2671.1	0.75	+1.7
2,573,098	-				-1.2
2,573,098	-				+2.3
2,573,121	+				-0.9
2,573,121	+				+0.7
2,573,121	+				+2.8
2,573,121	+				-1.3
2,573,122	-				+2.9
2,573,122	-				-1.5
2,573,122	-				-0.2
2,573,122	-				-2.1
2,573,139	+				+0.5
2,573,139	+				+1.8
2,573,139	+				-1.0
2,573,139	+				+1.8
2,573,139	+				+2.3
2,573,139	+				+0.7
2,573,139	+				-1.3
2,573,139	+				+0.6
2,573,140	-				-1.3
2,573,140	-				+2.0
2,573,180	+				-0.4
2,573,180	+				-1.2
2,573,181	-				+1.1
2,573,181	-				-2.3
2,573,209	+				+0.7
2,573,209	+				+1.1
2,573,209	+				-1.6
2,573,209	+				+0.8
2,573,209	+				-0.9
2,573,210	-				+0.3
2,573,210	-				-0.3
2,573,210	-				-1.7
2,573,210	-				-0.8
2,573,232	-				+0.9
2,573,352	+		Xcc-8004.2672.1	0.56	+0.8
2,573,353	-		Xcc-8004.2672.1	0.56	+2.0
2,573,353	-		Xcc-8004.2672.1	0.56	+1.6
2,573,353	-		Xcc-8004.2672.1	0.56	-1.0
2,573,441	+				-2.2
2,573,442	-				+1.3
2,573,448	+				-1.2
2,573,448	+				+1.3
2,573,448	+				-0.6
2,573,448	+				+1.0
2,573,449	-				+1.3
2,573,449	-				-1.0
2,573,449	-				-0.7
2,573,469	+				+0.3
2,573,521	+				-0.0
2,573,522	-				-1.3
2,573,553	+				+0.7
2,573,591	-		Xcc-8004.2673.1	0.16	-2.0
2,573,623	+		Xcc-8004.2673.1	0.23	+2.4
2,573,662	+		Xcc-8004.2673.1	0.32	+0.4
2,573,662	+		Xcc-8004.2673.1	0.32	+1.7
2,573,662	+		Xcc-8004.2673.1	0.32	+0.3
2,573,663	-		Xcc-8004.2673.1	0.32	-1.1
2,573,684	+		Xcc-8004.2673.1	0.37	-0.0
2,573,685	-		Xcc-8004.2673.1	0.37	+2.0
2,573,685	-		Xcc-8004.2673.1	0.37	-1.0
2,573,999	+				-2.7
2,573,999	+				-0.3
2,574,000	-				-0.7
2,574,000	-				-2.1
2,574,000	-				+1.1
2,574,074	+				-0.5
2,574,075	-				+1.3
2,574,075	-				-0.4
2,574,189	+				+1.1
2,574,190	-				-1.3
2,574,190	-				+1.3
2,574,272	+				-0.5
2,574,272	+				-0.1
2,574,272	+				-4.0
2,574,272	+				-0.9
2,574,272	+				-0.3
2,574,272	+				-1.7
2,574,272	+				-0.3
2,574,272	+				+0.2
2,574,272	+				+0.8
2,574,272	+				+0.8
2,574,273	-				-0.4
2,574,273	-				-0.8
2,574,273	-				+1.3
2,574,273	-				+0.7
2,574,273	-				+0.6
2,574,273	-				-2.7
2,574,273	-				-0.1
2,574,273	-				-3.2
2,574,273	-				-2.4
2,574,273	-				+0.7
2,574,273	-				+0.1
2,574,273	-				+1.5
2,574,273	-				-1.7
2,574,273	-				-1.5
2,574,273	-				-1.4
2,574,434	+		Xcc-8004.2674.1	0.19	+2.1
2,574,434	+		Xcc-8004.2674.1	0.19	-1.0
2,574,457	+		Xcc-8004.2674.1	0.22	+0.2
2,574,458	-		Xcc-8004.2674.1	0.22	+1.3
2,574,667	-		Xcc-8004.2674.1	0.46	-0.2
2,574,805	-		Xcc-8004.2674.1	0.62	-0.2
2,574,805	-		Xcc-8004.2674.1	0.62	-0.9
2,574,835	-		Xcc-8004.2674.1	0.65	-1.2
2,574,936	+		Xcc-8004.2674.1	0.76	-3.3
2,574,936	+		Xcc-8004.2674.1	0.76	+1.2
2,574,937	-		Xcc-8004.2674.1	0.77	-0.7
2,574,937	-		Xcc-8004.2674.1	0.77	+1.3
2,574,940	-		Xcc-8004.2674.1	0.77	-2.8