Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2611.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylemvessel barcodes Location 3 6 dpi (25 plantes)
2,517,938	+				+0.7
2,517,938	+				+2.0
2,517,938	+				+3.0
2,517,938	+				-0.7
2,517,938	+				+2.2
2,517,938	+				+2.0
2,517,938	+				-0.3
2,517,938	+				+0.5
2,517,938	+				+0.4
2,517,938	+				-1.6
2,517,938	+				+0.7
2,517,939	-				+0.7
2,517,939	-				-2.0
2,518,119	+		Xcc-8004.2609.1	0.38	-2.5
2,518,119	+		Xcc-8004.2609.1	0.38	-0.4
2,518,119	+		Xcc-8004.2609.1	0.38	+0.7
2,518,119	+		Xcc-8004.2609.1	0.38	+0.3
2,518,120	-		Xcc-8004.2609.1	0.38	+0.7
2,518,120	-		Xcc-8004.2609.1	0.38	-1.4
2,518,120	-		Xcc-8004.2609.1	0.38	+1.3
2,518,216	+		Xcc-8004.2609.1	0.60	-0.6
2,518,216	+		Xcc-8004.2609.1	0.60	+0.1
2,518,216	+		Xcc-8004.2609.1	0.60	+0.1
2,518,216	+		Xcc-8004.2609.1	0.60	+1.3
2,518,216	+		Xcc-8004.2609.1	0.60	-3.2
2,518,216	+		Xcc-8004.2609.1	0.60	+1.3
2,518,217	-		Xcc-8004.2609.1	0.60	+1.9
2,518,217	-		Xcc-8004.2609.1	0.60	-1.1
2,518,217	-		Xcc-8004.2609.1	0.60	+0.7
2,518,231	+		Xcc-8004.2609.1	0.63	+2.5
2,518,231	+		Xcc-8004.2609.1	0.63	-0.4
2,518,231	+		Xcc-8004.2609.1	0.63	+2.1
2,518,231	+		Xcc-8004.2609.1	0.63	-2.3
2,518,231	+		Xcc-8004.2609.1	0.63	+0.4
2,518,231	+		Xcc-8004.2609.1	0.63	+4.6
2,518,231	+		Xcc-8004.2609.1	0.63	-0.7
2,518,232	-		Xcc-8004.2609.1	0.64	-0.5
2,518,232	-		Xcc-8004.2609.1	0.64	-1.4
2,518,232	-		Xcc-8004.2609.1	0.64	-1.1
2,518,232	-		Xcc-8004.2609.1	0.64	-0.0
2,518,232	-		Xcc-8004.2609.1	0.64	-2.1
2,518,419	-				-0.8
2,518,437	+		Xcc-8004.2610.1	0.11	-1.1
2,518,471	+		Xcc-8004.2610.1	0.19	+1.7
2,518,471	+		Xcc-8004.2610.1	0.19	-1.1
2,518,471	+		Xcc-8004.2610.1	0.19	-1.8
2,518,471	+		Xcc-8004.2610.1	0.19	+2.4
2,518,472	-		Xcc-8004.2610.1	0.19	-1.6
2,518,472	-		Xcc-8004.2610.1	0.19	-2.8
2,518,539	+		Xcc-8004.2610.1	0.35	-1.3
2,518,539	+		Xcc-8004.2610.1	0.35	-2.1
2,518,539	+		Xcc-8004.2610.1	0.35	-1.7
2,518,539	+		Xcc-8004.2610.1	0.35	-4.0
2,518,539	+		Xcc-8004.2610.1	0.35	+3.6
2,518,539	+		Xcc-8004.2610.1	0.35	-0.9
2,518,540	-		Xcc-8004.2610.1	0.35	-1.5
2,518,540	-		Xcc-8004.2610.1	0.35	-1.4
2,518,606	-		Xcc-8004.2610.1	0.51	+0.1
2,518,635	+		Xcc-8004.2610.1	0.57	-1.7
2,518,664	+		Xcc-8004.2610.1	0.64	+0.4
2,518,665	-		Xcc-8004.2610.1	0.65	+2.3
2,518,836	+				+0.1
2,518,836	+				+0.0
2,518,836	+				+1.9
2,518,836	+				+0.1
2,518,837	-				-1.7
2,518,837	-				-1.4
2,518,841	+				+2.9
2,518,859	+				+1.3
2,518,859	+				-0.4
2,518,860	-				+1.6
2,518,860	-				+2.5
2,518,869	+				+0.1
2,518,869	+				-0.9
2,518,869	+				-1.3
2,518,870	-				+2.1
2,518,870	-				+1.3
2,519,019	+		Xcc-8004.2611.1	0.22	-0.4
2,519,019	+		Xcc-8004.2611.1	0.22	-1.5
2,519,019	+		Xcc-8004.2611.1	0.22	-2.5
2,519,019	+		Xcc-8004.2611.1	0.22	+2.1
2,519,019	+		Xcc-8004.2611.1	0.22	-0.4
2,519,019	+		Xcc-8004.2611.1	0.22	+1.8
2,519,019	+		Xcc-8004.2611.1	0.22	-2.3
2,519,019	+		Xcc-8004.2611.1	0.22	-0.4
2,519,019	+		Xcc-8004.2611.1	0.22	-2.6
2,519,019	+		Xcc-8004.2611.1	0.22	+0.7
2,519,019	+		Xcc-8004.2611.1	0.22	+1.4
2,519,020	-		Xcc-8004.2611.1	0.23	-1.0
2,519,020	-		Xcc-8004.2611.1	0.23	+1.3
2,519,020	-		Xcc-8004.2611.1	0.23	+0.2
2,519,020	-		Xcc-8004.2611.1	0.23	-3.5
2,519,020	-		Xcc-8004.2611.1	0.23	+0.1
2,519,020	-		Xcc-8004.2611.1	0.23	+0.2
2,519,020	-		Xcc-8004.2611.1	0.23	+1.0
2,519,020	-		Xcc-8004.2611.1	0.23	-0.7
2,519,020	-		Xcc-8004.2611.1	0.23	-0.3
2,519,020	-		Xcc-8004.2611.1	0.23	+1.7
2,519,067	+		Xcc-8004.2611.1	0.29	-0.5
2,519,067	+		Xcc-8004.2611.1	0.29	+0.6
2,519,067	+		Xcc-8004.2611.1	0.29	-0.5
2,519,068	-		Xcc-8004.2611.1	0.29	+0.5
2,519,068	-		Xcc-8004.2611.1	0.29	+0.4
2,519,068	-		Xcc-8004.2611.1	0.29	+0.4
2,519,068	-		Xcc-8004.2611.1	0.29	-1.0
2,519,068	-		Xcc-8004.2611.1	0.29	+0.7
2,519,075	+		Xcc-8004.2611.1	0.30	-0.1
2,519,076	-		Xcc-8004.2611.1	0.30	+0.8
2,519,076	-		Xcc-8004.2611.1	0.30	-0.0
2,519,277	+		Xcc-8004.2611.1	0.56	+1.5
2,519,277	+		Xcc-8004.2611.1	0.56	+1.3
2,519,277	+		Xcc-8004.2611.1	0.56	+0.6
2,519,278	-		Xcc-8004.2611.1	0.56	-0.2
2,519,278	-		Xcc-8004.2611.1	0.56	+0.9
2,519,278	-		Xcc-8004.2611.1	0.56	-2.5
2,519,278	-		Xcc-8004.2611.1	0.56	+2.7
2,519,481	+		Xcc-8004.2611.1	0.83	-0.2
2,519,482	-		Xcc-8004.2611.1	0.83	+2.5
2,519,508	+		Xcc-8004.2611.1	0.87	+0.3
2,519,508	+		Xcc-8004.2611.1	0.87	-0.1
2,519,508	+		Xcc-8004.2611.1	0.87	+1.9
2,519,508	+		Xcc-8004.2611.1	0.87	+1.0
2,519,509	-		Xcc-8004.2611.1	0.87	+1.5
2,519,509	-		Xcc-8004.2611.1	0.87	+1.6
2,519,623	+				+1.7
2,519,724	+				-0.3
2,519,725	-				+1.5
2,519,725	-				+1.0
2,519,734	+				+0.4
2,519,734	+				+1.3
2,519,734	+				-0.3
2,519,735	-				-0.4
2,519,745	+				+0.5
2,519,745	+				+1.1
2,519,745	+				+2.0
2,519,745	+				+0.2
2,519,745	+				-0.8
2,519,746	-				+0.4
2,519,746	-				+0.5
2,519,746	-				+0.8
2,519,746	-				+0.7
2,519,748	+				+0.8
2,519,748	+				+1.3
2,519,748	+				+0.3
2,519,748	+				-2.1
2,519,749	-				-0.8
2,519,749	-				+1.1
2,519,749	-				+1.1
2,519,775	-				+1.8
2,519,786	+				+0.6
2,519,786	+				-1.3
2,519,786	+				-1.1
2,519,786	+				+0.7
2,519,786	+				+0.7
2,519,786	+				+0.1
2,519,786	+				+1.2
2,519,786	+				-0.3
2,519,818	+				+0.8
2,519,818	+				+0.7
2,519,818	+				-0.7
2,519,818	+				-0.8
2,519,818	+				-2.9
2,519,819	-				+0.3
2,519,819	-				+0.2
2,519,819	-				-1.8
2,519,819	-				+0.8
2,519,870	-				-2.5
2,519,982	+		Xcc-8004.2612.1	0.24	-0.5
2,519,982	+		Xcc-8004.2612.1	0.24	+0.5
2,519,983	-		Xcc-8004.2612.1	0.24	+0.3
2,519,983	-		Xcc-8004.2612.1	0.24	-1.3
2,519,983	-		Xcc-8004.2612.1	0.24	+0.5
2,519,983	-		Xcc-8004.2612.1	0.24	+3.3
2,520,047	+		Xcc-8004.2612.1	0.34	-0.9
2,520,048	-		Xcc-8004.2612.1	0.34	-0.6
2,520,128	+		Xcc-8004.2612.1	0.47	-1.0
2,520,128	+		Xcc-8004.2612.1	0.47	+0.5
2,520,129	-		Xcc-8004.2612.1	0.47	+0.2
2,520,198	-		Xcc-8004.2612.1	0.58	-1.1
2,520,440	+				+0.3
2,520,440	+				-0.3
2,520,441	-				-1.2
2,520,441	-				+1.8
2,520,441	-				+0.8
2,520,441	-				-0.5
2,520,463	+				-2.4
2,520,463	+				-1.3
2,520,463	+				-1.3
2,520,463	+				-0.3
2,520,463	+				+0.1
2,520,463	+				-1.7
2,520,464	-				-0.3
2,520,464	-				-1.7
2,520,464	-				+0.2
2,520,464	-				-2.3
2,520,464	-				-2.2
2,520,464	-				-2.0
2,520,464	-				-1.4
2,520,464	-				-0.3
2,520,514	+				+1.3
2,520,514	+				-1.1
2,520,514	+				-0.3
2,520,514	+				+1.6
2,520,515	-				+0.2
2,520,515	-				+0.8
2,520,555	+				-0.5
2,520,555	+				+1.3
2,520,555	+				-1.7
2,520,555	+				-0.8
2,520,556	-				+0.6
2,520,556	-				+3.7
2,520,556	-				-1.1
2,520,556	-				+0.8
2,520,556	-				-2.4
2,520,556	-				+0.9
2,520,556	-				+1.3
2,520,588	+				-2.3
2,520,588	+				+0.3
2,520,588	+				+1.7
2,520,588	+				-2.1
2,520,588	+				-2.9
2,520,589	-				+1.2
2,520,589	-				-0.7
2,520,589	-				-0.0
2,520,589	-				+0.9
2,520,589	-				-0.0
2,520,589	-				+3.2
2,520,589	-				+4.6
2,520,589	-				-1.8
2,520,589	-				-3.1
2,520,589	-				+0.5
2,520,589	-				-2.3
2,520,589	-				-0.1
2,520,590	+				+0.7
2,520,590	+				+1.6
2,520,590	+				-3.5
2,520,590	+				-2.3
2,520,590	+				+3.8
2,520,590	+				+0.6
2,520,590	+				+1.3
2,520,590	+				-0.0
2,520,591	-				-2.8
2,520,591	-				-3.1
2,520,591	-				+0.5
2,520,591	-				-1.0
2,520,591	-				+2.0
2,520,591	-				+0.4
2,520,591	-				-1.1
2,520,591	-				+0.5
2,520,605	+				-2.3
2,520,605	+				+0.9
2,520,605	+				+2.0
2,520,605	+				+1.6
2,520,605	+				-0.0
2,520,606	-				+0.7
2,520,606	-				-2.4
2,520,606	-				-0.4