Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.257.1 and Xcc-8004.259.1 overlap by 4 nucleotides Xcc-8004.259.1 and Xcc-8004.260.1 are separated by 85 nucleotides
Xcc-8004.257.1: Xcc-8004.257.1 - lactoylglutathione lyase, at 251,547 to 251,984
Xcc-8004.257.1
Xcc-8004.259.1: Xcc-8004.259.1 - FIG01209938: hypothetical protein, at 251,981 to 252,883
Xcc-8004.259.1
Xcc-8004.260.1: Xcc-8004.260.1 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 252,969 to 254,249
Xcc-8004.260.1
Position (kb) 251
252
253 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 251.062 kb on - strand at 251.062 kb on - strand at 251.062 kb on - strand at 251.062 kb on - strand at 251.245 kb on + strand at 251.268 kb on + strand at 251.268 kb on + strand at 251.268 kb on + strand at 251.268 kb on + strand at 251.268 kb on + strand at 251.268 kb on + strand at 251.268 kb on + strand at 251.276 kb on + strand at 251.276 kb on + strand at 251.356 kb on + strand at 251.356 kb on + strand at 251.357 kb on - strand at 251.416 kb on - strand at 251.537 kb on + strand at 251.538 kb on - strand at 251.538 kb on - strand at 251.551 kb on + strand at 251.551 kb on + strand at 251.552 kb on - strand at 251.552 kb on - strand at 251.555 kb on + strand at 251.611 kb on + strand, within Xcc-8004.257.1 at 251.611 kb on + strand, within Xcc-8004.257.1 at 251.612 kb on - strand, within Xcc-8004.257.1 at 251.612 kb on - strand, within Xcc-8004.257.1 at 251.612 kb on - strand, within Xcc-8004.257.1 at 251.612 kb on - strand, within Xcc-8004.257.1 at 251.612 kb on - strand, within Xcc-8004.257.1 at 251.722 kb on + strand, within Xcc-8004.257.1 at 251.836 kb on + strand, within Xcc-8004.257.1 at 251.836 kb on + strand, within Xcc-8004.257.1 at 251.890 kb on + strand, within Xcc-8004.257.1 at 251.890 kb on + strand, within Xcc-8004.257.1 at 251.891 kb on - strand, within Xcc-8004.257.1 at 251.891 kb on - strand, within Xcc-8004.257.1 at 251.891 kb on - strand, within Xcc-8004.257.1 at 251.891 kb on - strand, within Xcc-8004.257.1 at 251.923 kb on + strand, within Xcc-8004.257.1 at 251.923 kb on + strand, within Xcc-8004.257.1 at 251.923 kb on + strand, within Xcc-8004.257.1 at 251.923 kb on + strand, within Xcc-8004.257.1 at 251.923 kb on + strand, within Xcc-8004.257.1 at 251.923 kb on + strand, within Xcc-8004.257.1 at 251.923 kb on + strand, within Xcc-8004.257.1 at 251.923 kb on + strand, within Xcc-8004.257.1 at 251.923 kb on + strand, within Xcc-8004.257.1 at 251.923 kb on + strand, within Xcc-8004.257.1 at 251.923 kb on + strand, within Xcc-8004.257.1 at 251.924 kb on - strand, within Xcc-8004.257.1 at 251.924 kb on - strand, within Xcc-8004.257.1 at 251.924 kb on - strand, within Xcc-8004.257.1 at 251.924 kb on - strand, within Xcc-8004.257.1 at 251.924 kb on - strand, within Xcc-8004.257.1 at 251.924 kb on - strand, within Xcc-8004.257.1 at 251.924 kb on - strand, within Xcc-8004.257.1 at 251.924 kb on - strand, within Xcc-8004.257.1 at 251.924 kb on - strand, within Xcc-8004.257.1 at 251.924 kb on - strand, within Xcc-8004.257.1 at 251.924 kb on - strand, within Xcc-8004.257.1 at 251.925 kb on + strand, within Xcc-8004.257.1 at 251.925 kb on + strand, within Xcc-8004.257.1 at 251.925 kb on + strand, within Xcc-8004.257.1 at 251.925 kb on + strand, within Xcc-8004.257.1 at 251.925 kb on + strand, within Xcc-8004.257.1 at 251.925 kb on + strand, within Xcc-8004.257.1 at 251.926 kb on - strand, within Xcc-8004.257.1 at 251.926 kb on - strand, within Xcc-8004.257.1 at 252.030 kb on + strand at 252.030 kb on + strand at 252.030 kb on + strand at 252.030 kb on + strand at 252.030 kb on + strand at 252.030 kb on + strand at 252.031 kb on - strand at 252.031 kb on - strand at 252.031 kb on - strand at 252.031 kb on - strand at 252.031 kb on - strand at 252.031 kb on - strand at 252.031 kb on - strand at 252.090 kb on + strand, within Xcc-8004.259.1 at 252.090 kb on + strand, within Xcc-8004.259.1 at 252.090 kb on + strand, within Xcc-8004.259.1 at 252.090 kb on + strand, within Xcc-8004.259.1 at 252.090 kb on + strand, within Xcc-8004.259.1 at 252.090 kb on + strand, within Xcc-8004.259.1 at 252.090 kb on + strand, within Xcc-8004.259.1 at 252.091 kb on - strand, within Xcc-8004.259.1 at 252.091 kb on - strand, within Xcc-8004.259.1 at 252.091 kb on - strand, within Xcc-8004.259.1 at 252.091 kb on - strand, within Xcc-8004.259.1 at 252.099 kb on + strand, within Xcc-8004.259.1 at 252.099 kb on + strand, within Xcc-8004.259.1 at 252.099 kb on + strand, within Xcc-8004.259.1 at 252.099 kb on + strand, within Xcc-8004.259.1 at 252.099 kb on + strand, within Xcc-8004.259.1 at 252.100 kb on - strand, within Xcc-8004.259.1 at 252.100 kb on - strand, within Xcc-8004.259.1 at 252.141 kb on + strand, within Xcc-8004.259.1 at 252.142 kb on - strand, within Xcc-8004.259.1 at 252.198 kb on + strand, within Xcc-8004.259.1 at 252.199 kb on - strand, within Xcc-8004.259.1 at 252.199 kb on - strand, within Xcc-8004.259.1 at 252.303 kb on + strand, within Xcc-8004.259.1 at 252.303 kb on + strand, within Xcc-8004.259.1 at 252.303 kb on + strand, within Xcc-8004.259.1 at 252.303 kb on + strand, within Xcc-8004.259.1 at 252.303 kb on + strand, within Xcc-8004.259.1 at 252.303 kb on + strand, within Xcc-8004.259.1 at 252.304 kb on - strand, within Xcc-8004.259.1 at 252.304 kb on - strand, within Xcc-8004.259.1 at 252.304 kb on - strand, within Xcc-8004.259.1 at 252.304 kb on - strand, within Xcc-8004.259.1 at 252.345 kb on + strand, within Xcc-8004.259.1 at 252.346 kb on - strand, within Xcc-8004.259.1 at 252.346 kb on - strand, within Xcc-8004.259.1 at 252.859 kb on + strand at 252.860 kb on - strand at 252.860 kb on - strand at 252.860 kb on - strand at 252.860 kb on - strand at 252.898 kb on + strand at 252.898 kb on + strand at 252.898 kb on + strand at 252.898 kb on + strand at 252.898 kb on + strand at 252.899 kb on - strand at 252.899 kb on - strand at 252.899 kb on - strand at 252.899 kb on - strand at 252.912 kb on + strand at 252.912 kb on + strand at 252.913 kb on - strand at 252.913 kb on - strand at 252.913 kb on - strand at 253.010 kb on + strand at 253.011 kb on - strand at 253.011 kb on - strand at 253.011 kb on - strand at 253.039 kb on - strand at 253.350 kb on + strand, within Xcc-8004.260.1 at 253.350 kb on + strand, within Xcc-8004.260.1 at 253.596 kb on + strand, within Xcc-8004.260.1 at 253.597 kb on - strand, within Xcc-8004.260.1 at 253.833 kb on + strand, within Xcc-8004.260.1 at 253.833 kb on + strand, within Xcc-8004.260.1 at 253.833 kb on + strand, within Xcc-8004.260.1 at 253.833 kb on + strand, within Xcc-8004.260.1 at 253.834 kb on - strand, within Xcc-8004.260.1 at 253.834 kb on - strand, within Xcc-8004.260.1 at 253.834 kb on - strand, within Xcc-8004.260.1 at 253.834 kb on - strand, within Xcc-8004.260.1 at 253.834 kb on - strand, within Xcc-8004.260.1 at 253.834 kb on - strand, within Xcc-8004.260.1 at 253.834 kb on - strand, within Xcc-8004.260.1 at 253.834 kb on - strand, within Xcc-8004.260.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes) remove 251,062 - -1.1 251,062 - -0.6 251,062 - -2.1 251,062 - -0.0 251,245 + -0.7 251,268 + +1.3 251,268 + -0.7 251,268 + -0.8 251,268 + -1.3 251,268 + +0.7 251,268 + +0.8 251,268 + -2.8 251,276 + -1.4 251,276 + -2.3 251,356 + +3.7 251,356 + -0.6 251,357 - -1.1 251,416 - -0.1 251,537 + +1.7 251,538 - +1.1 251,538 - +1.7 251,551 + -1.3 251,551 + -0.2 251,552 - +0.0 251,552 - -2.5 251,555 + -1.9 251,611 + Xcc-8004.257.1 0.15 -1.9 251,611 + Xcc-8004.257.1 0.15 -1.8 251,612 - Xcc-8004.257.1 0.15 +0.3 251,612 - Xcc-8004.257.1 0.15 -2.8 251,612 - Xcc-8004.257.1 0.15 -1.0 251,612 - Xcc-8004.257.1 0.15 +0.2 251,612 - Xcc-8004.257.1 0.15 -0.6 251,722 + Xcc-8004.257.1 0.40 +2.0 251,836 + Xcc-8004.257.1 0.66 -1.8 251,836 + Xcc-8004.257.1 0.66 +2.7 251,890 + Xcc-8004.257.1 0.78 -1.8 251,890 + Xcc-8004.257.1 0.78 -1.3 251,891 - Xcc-8004.257.1 0.79 +1.6 251,891 - Xcc-8004.257.1 0.79 -2.8 251,891 - Xcc-8004.257.1 0.79 +1.1 251,891 - Xcc-8004.257.1 0.79 -0.2 251,923 + Xcc-8004.257.1 0.86 +0.9 251,923 + Xcc-8004.257.1 0.86 +0.3 251,923 + Xcc-8004.257.1 0.86 -1.0 251,923 + Xcc-8004.257.1 0.86 -1.3 251,923 + Xcc-8004.257.1 0.86 -1.8 251,923 + Xcc-8004.257.1 0.86 -1.4 251,923 + Xcc-8004.257.1 0.86 -2.0 251,923 + Xcc-8004.257.1 0.86 -0.3 251,923 + Xcc-8004.257.1 0.86 +0.1 251,923 + Xcc-8004.257.1 0.86 +1.7 251,923 + Xcc-8004.257.1 0.86 -0.6 251,924 - Xcc-8004.257.1 0.86 -0.8 251,924 - Xcc-8004.257.1 0.86 +1.7 251,924 - Xcc-8004.257.1 0.86 +2.4 251,924 - Xcc-8004.257.1 0.86 +1.5 251,924 - Xcc-8004.257.1 0.86 -3.8 251,924 - Xcc-8004.257.1 0.86 +1.0 251,924 - Xcc-8004.257.1 0.86 -1.2 251,924 - Xcc-8004.257.1 0.86 -0.2 251,924 - Xcc-8004.257.1 0.86 -1.1 251,924 - Xcc-8004.257.1 0.86 -0.1 251,924 - Xcc-8004.257.1 0.86 +1.7 251,925 + Xcc-8004.257.1 0.86 +0.4 251,925 + Xcc-8004.257.1 0.86 -2.3 251,925 + Xcc-8004.257.1 0.86 -1.2 251,925 + Xcc-8004.257.1 0.86 +2.2 251,925 + Xcc-8004.257.1 0.86 +0.9 251,925 + Xcc-8004.257.1 0.86 +0.6 251,926 - Xcc-8004.257.1 0.87 -0.1 251,926 - Xcc-8004.257.1 0.87 -1.2 252,030 + +0.6 252,030 + -1.7 252,030 + +2.2 252,030 + -0.9 252,030 + -0.5 252,030 + -0.5 252,031 - +0.2 252,031 - +0.9 252,031 - -2.1 252,031 - -1.6 252,031 - -1.8 252,031 - -2.5 252,031 - +1.2 252,090 + Xcc-8004.259.1 0.12 +1.3 252,090 + Xcc-8004.259.1 0.12 -2.0 252,090 + Xcc-8004.259.1 0.12 -0.8 252,090 + Xcc-8004.259.1 0.12 -0.8 252,090 + Xcc-8004.259.1 0.12 -0.3 252,090 + Xcc-8004.259.1 0.12 -0.3 252,090 + Xcc-8004.259.1 0.12 +1.2 252,091 - Xcc-8004.259.1 0.12 -0.3 252,091 - Xcc-8004.259.1 0.12 -3.5 252,091 - Xcc-8004.259.1 0.12 -1.3 252,091 - Xcc-8004.259.1 0.12 +0.0 252,099 + Xcc-8004.259.1 0.13 +6.2 252,099 + Xcc-8004.259.1 0.13 +1.6 252,099 + Xcc-8004.259.1 0.13 -0.8 252,099 + Xcc-8004.259.1 0.13 +2.2 252,099 + Xcc-8004.259.1 0.13 -1.3 252,100 - Xcc-8004.259.1 0.13 -2.8 252,100 - Xcc-8004.259.1 0.13 -0.9 252,141 + Xcc-8004.259.1 0.18 -0.8 252,142 - Xcc-8004.259.1 0.18 +0.4 252,198 + Xcc-8004.259.1 0.24 -1.1 252,199 - Xcc-8004.259.1 0.24 -0.3 252,199 - Xcc-8004.259.1 0.24 -1.8 252,303 + Xcc-8004.259.1 0.36 -1.1 252,303 + Xcc-8004.259.1 0.36 -0.6 252,303 + Xcc-8004.259.1 0.36 -0.1 252,303 + Xcc-8004.259.1 0.36 +0.5 252,303 + Xcc-8004.259.1 0.36 -1.6 252,303 + Xcc-8004.259.1 0.36 +1.7 252,304 - Xcc-8004.259.1 0.36 +2.4 252,304 - Xcc-8004.259.1 0.36 -0.3 252,304 - Xcc-8004.259.1 0.36 -0.8 252,304 - Xcc-8004.259.1 0.36 +0.7 252,345 + Xcc-8004.259.1 0.40 -0.6 252,346 - Xcc-8004.259.1 0.40 -2.6 252,346 - Xcc-8004.259.1 0.40 -2.5 252,859 + -0.4 252,860 - +0.5 252,860 - +0.1 252,860 - +1.5 252,860 - -2.1 252,898 + +0.4 252,898 + -0.2 252,898 + +0.4 252,898 + +1.0 252,898 + -1.3 252,899 - +0.7 252,899 - -0.1 252,899 - -3.3 252,899 - +1.6 252,912 + -1.3 252,912 + +0.2 252,913 - -2.0 252,913 - -1.6 252,913 - -2.3 253,010 + +1.5 253,011 - +0.4 253,011 - +1.8 253,011 - +0.4 253,039 - -0.8 253,350 + Xcc-8004.260.1 0.30 -0.4 253,350 + Xcc-8004.260.1 0.30 -0.2 253,596 + Xcc-8004.260.1 0.49 +1.2 253,597 - Xcc-8004.260.1 0.49 +0.1 253,833 + Xcc-8004.260.1 0.67 -2.0 253,833 + Xcc-8004.260.1 0.67 -0.2 253,833 + Xcc-8004.260.1 0.67 +0.5 253,833 + Xcc-8004.260.1 0.67 +0.2 253,834 - Xcc-8004.260.1 0.68 +1.2 253,834 - Xcc-8004.260.1 0.68 +1.4 253,834 - Xcc-8004.260.1 0.68 -1.7 253,834 - Xcc-8004.260.1 0.68 -0.1 253,834 - Xcc-8004.260.1 0.68 -0.4 253,834 - Xcc-8004.260.1 0.68 -2.8 253,834 - Xcc-8004.260.1 0.68 -0.1 253,834 - Xcc-8004.260.1 0.68 +0.3
Or see this region's nucleotide sequence