Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2577.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2575.1 and Xcc-8004.2577.1 overlap by 8 nucleotidesXcc-8004.2577.1 and Xcc-8004.2578.1 overlap by 17 nucleotidesXcc-8004.2578.1 and Xcc-8004.2579.1 are separated by 46 nucleotides Xcc-8004.2575.1: Xcc-8004.2575.1 - Protein with ParB-like nuclease domain in PFGI-1-like cluster, at 2,483,259 to 2,484,902 Xcc-8004.2575.1 Xcc-8004.2577.1: Xcc-8004.2577.1 - FIG034647: hypothetical protein in PFGI-1-like cluster, at 2,484,895 to 2,485,155 Xcc-8004.2577.1 Xcc-8004.2578.1: Xcc-8004.2578.1 - Chromosome partitioning ATPase in PFGI-1-like cluster, ParA-like, at 2,485,139 to 2,486,014 Xcc-8004.2578.1 Xcc-8004.2579.1: Xcc-8004.2579.1 - Transcriptional regulator in PFGI-1-like cluster, at 2,486,061 to 2,486,273 Xcc-8004.2579.1 Position (kb) 2484 2485 2486Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2483.900 kb on + strand, within Xcc-8004.2575.1at 2483.900 kb on + strand, within Xcc-8004.2575.1at 2483.901 kb on - strand, within Xcc-8004.2575.1at 2484.061 kb on + strand, within Xcc-8004.2575.1at 2484.061 kb on + strand, within Xcc-8004.2575.1at 2484.208 kb on + strand, within Xcc-8004.2575.1at 2484.209 kb on - strand, within Xcc-8004.2575.1at 2484.209 kb on - strand, within Xcc-8004.2575.1at 2484.209 kb on - strand, within Xcc-8004.2575.1at 2484.211 kb on + strand, within Xcc-8004.2575.1at 2484.212 kb on - strand, within Xcc-8004.2575.1at 2484.212 kb on - strand, within Xcc-8004.2575.1at 2484.212 kb on - strand, within Xcc-8004.2575.1at 2484.212 kb on - strand, within Xcc-8004.2575.1at 2484.283 kb on + strand, within Xcc-8004.2575.1at 2484.284 kb on - strand, within Xcc-8004.2575.1at 2484.313 kb on + strand, within Xcc-8004.2575.1at 2484.354 kb on + strand, within Xcc-8004.2575.1at 2484.427 kb on + strand, within Xcc-8004.2575.1at 2484.427 kb on + strand, within Xcc-8004.2575.1at 2484.427 kb on + strand, within Xcc-8004.2575.1at 2484.427 kb on + strand, within Xcc-8004.2575.1at 2484.427 kb on + strand, within Xcc-8004.2575.1at 2484.428 kb on - strand, within Xcc-8004.2575.1at 2484.561 kb on + strand, within Xcc-8004.2575.1at 2484.561 kb on + strand, within Xcc-8004.2575.1at 2484.623 kb on + strand, within Xcc-8004.2575.1at 2484.623 kb on + strand, within Xcc-8004.2575.1at 2484.624 kb on - strand, within Xcc-8004.2575.1at 2484.624 kb on - strand, within Xcc-8004.2575.1at 2484.646 kb on + strand, within Xcc-8004.2575.1at 2484.647 kb on - strand, within Xcc-8004.2575.1at 2484.728 kb on - strand, within Xcc-8004.2575.1at 2484.764 kb on - strandat 2484.764 kb on - strandat 2484.961 kb on + strand, within Xcc-8004.2577.1at 2484.961 kb on + strand, within Xcc-8004.2577.1at 2484.961 kb on + strand, within Xcc-8004.2577.1at 2484.961 kb on + strand, within Xcc-8004.2577.1at 2485.016 kb on + strand, within Xcc-8004.2577.1at 2485.016 kb on + strand, within Xcc-8004.2577.1at 2485.021 kb on - strand, within Xcc-8004.2577.1at 2485.341 kb on + strand, within Xcc-8004.2578.1at 2485.503 kb on + strand, within Xcc-8004.2578.1at 2485.545 kb on - strand, within Xcc-8004.2578.1at 2485.562 kb on + strand, within Xcc-8004.2578.1at 2485.562 kb on + strand, within Xcc-8004.2578.1at 2485.563 kb on - strand, within Xcc-8004.2578.1at 2485.655 kb on + strand, within Xcc-8004.2578.1at 2485.655 kb on + strand, within Xcc-8004.2578.1at 2485.656 kb on - strand, within Xcc-8004.2578.1at 2485.656 kb on - strand, within Xcc-8004.2578.1at 2485.656 kb on - strand, within Xcc-8004.2578.1at 2485.756 kb on + strand, within Xcc-8004.2578.1at 2485.839 kb on + strand, within Xcc-8004.2578.1at 2485.839 kb on + strand, within Xcc-8004.2578.1at 2485.839 kb on + strand, within Xcc-8004.2578.1at 2485.840 kb on - strand, within Xcc-8004.2578.1at 2485.872 kb on + strand, within Xcc-8004.2578.1at 2485.875 kb on + strand, within Xcc-8004.2578.1at 2485.876 kb on - strand, within Xcc-8004.2578.1at 2485.876 kb on - strand, within Xcc-8004.2578.1at 2485.876 kb on - strand, within Xcc-8004.2578.1at 2486.004 kb on - strandat 2486.004 kb on - strandat 2486.004 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes)
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2,483,900 + Xcc-8004.2575.1 0.39 -1.2
2,483,900 + Xcc-8004.2575.1 0.39 -1.2
2,483,901 - Xcc-8004.2575.1 0.39 -1.6
2,484,061 + Xcc-8004.2575.1 0.49 +0.9
2,484,061 + Xcc-8004.2575.1 0.49 -1.5
2,484,208 + Xcc-8004.2575.1 0.58 -0.1
2,484,209 - Xcc-8004.2575.1 0.58 -1.2
2,484,209 - Xcc-8004.2575.1 0.58 -2.7
2,484,209 - Xcc-8004.2575.1 0.58 -1.2
2,484,211 + Xcc-8004.2575.1 0.58 -0.0
2,484,212 - Xcc-8004.2575.1 0.58 -2.1
2,484,212 - Xcc-8004.2575.1 0.58 +0.8
2,484,212 - Xcc-8004.2575.1 0.58 -0.7
2,484,212 - Xcc-8004.2575.1 0.58 -1.7
2,484,283 + Xcc-8004.2575.1 0.62 +0.9
2,484,284 - Xcc-8004.2575.1 0.62 +0.1
2,484,313 + Xcc-8004.2575.1 0.64 -0.6
2,484,354 + Xcc-8004.2575.1 0.67 +1.3
2,484,427 + Xcc-8004.2575.1 0.71 -3.0
2,484,427 + Xcc-8004.2575.1 0.71 -2.5
2,484,427 + Xcc-8004.2575.1 0.71 +0.2
2,484,427 + Xcc-8004.2575.1 0.71 -0.3
2,484,427 + Xcc-8004.2575.1 0.71 -0.1
2,484,428 - Xcc-8004.2575.1 0.71 -1.1
2,484,561 + Xcc-8004.2575.1 0.79 +0.2
2,484,561 + Xcc-8004.2575.1 0.79 -1.8
2,484,623 + Xcc-8004.2575.1 0.83 -0.3
2,484,623 + Xcc-8004.2575.1 0.83 +0.9
2,484,624 - Xcc-8004.2575.1 0.83 -1.0
2,484,624 - Xcc-8004.2575.1 0.83 +0.9
2,484,646 + Xcc-8004.2575.1 0.84 +1.8
2,484,647 - Xcc-8004.2575.1 0.84 -0.3
2,484,728 - Xcc-8004.2575.1 0.89 -2.9
2,484,764 - +2.1
2,484,764 - -0.9
2,484,961 + Xcc-8004.2577.1 0.25 -1.6
2,484,961 + Xcc-8004.2577.1 0.25 -0.9
2,484,961 + Xcc-8004.2577.1 0.25 -3.5
2,484,961 + Xcc-8004.2577.1 0.25 -1.6
2,485,016 + Xcc-8004.2577.1 0.46 -2.4
2,485,016 + Xcc-8004.2577.1 0.46 +0.5
2,485,021 - Xcc-8004.2577.1 0.48 -1.7
2,485,341 + Xcc-8004.2578.1 0.23 +0.9
2,485,503 + Xcc-8004.2578.1 0.42 -0.0
2,485,545 - Xcc-8004.2578.1 0.46 -3.4
2,485,562 + Xcc-8004.2578.1 0.48 +0.1
2,485,562 + Xcc-8004.2578.1 0.48 +1.6
2,485,563 - Xcc-8004.2578.1 0.48 -2.4
2,485,655 + Xcc-8004.2578.1 0.59 +2.5
2,485,655 + Xcc-8004.2578.1 0.59 +0.8
2,485,656 - Xcc-8004.2578.1 0.59 -2.2
2,485,656 - Xcc-8004.2578.1 0.59 -2.2
2,485,656 - Xcc-8004.2578.1 0.59 -0.7
2,485,756 + Xcc-8004.2578.1 0.70 -0.7
2,485,839 + Xcc-8004.2578.1 0.80 -1.1
2,485,839 + Xcc-8004.2578.1 0.80 +0.6
2,485,839 + Xcc-8004.2578.1 0.80 +1.2
2,485,840 - Xcc-8004.2578.1 0.80 -0.2
2,485,872 + Xcc-8004.2578.1 0.84 -3.5
2,485,875 + Xcc-8004.2578.1 0.84 +0.5
2,485,876 - Xcc-8004.2578.1 0.84 -1.4
2,485,876 - Xcc-8004.2578.1 0.84 +0.8
2,485,876 - Xcc-8004.2578.1 0.84 -1.3
2,486,004 - -0.8
2,486,004 - -3.7
2,486,004 - +1.3

Or see this region's nucleotide sequence