Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2104.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylemvessel barcodes Location 3 6 dpi (25 plantes)
2,018,490	+				-1.9
2,018,490	+				+1.8
2,018,490	+				+0.8
2,018,490	+				+0.6
2,018,490	+				-0.4
2,018,490	+				-0.8
2,018,490	+				+0.6
2,018,490	+				-0.9
2,018,490	+				-1.3
2,018,490	+				+0.3
2,018,490	+				-1.3
2,018,490	+				-1.0
2,018,490	+				-1.7
2,018,490	+				+1.6
2,018,491	-				-0.9
2,018,491	-				-2.8
2,018,491	-				-0.1
2,018,491	-				-2.4
2,018,491	-				+0.7
2,018,491	-				-2.4
2,018,491	-				-1.5
2,018,491	-				-1.5
2,018,524	+				+0.9
2,018,524	+				-0.1
2,018,524	+				-0.9
2,018,524	+				+0.1
2,018,524	+				-0.9
2,018,525	-				-0.4
2,018,525	-				-2.9
2,018,525	-				-2.1
2,018,525	-				+1.4
2,018,526	+				+0.4
2,018,526	+				-0.1
2,018,527	-				+1.6
2,018,549	+				+0.7
2,018,549	+				-1.4
2,018,549	+				-2.0
2,018,549	+				-2.4
2,018,549	+				+1.8
2,018,550	-				+2.5
2,018,550	-				-1.8
2,018,653	-				+0.9
2,018,653	-				-2.0
2,018,653	-				+0.4
2,018,704	+				+3.2
2,018,704	+				-2.5
2,018,704	+				+0.4
2,018,704	+				+0.9
2,018,704	+				+1.7
2,018,704	+				+3.0
2,018,704	+				+0.4
2,018,705	-				-1.6
2,018,705	-				-2.5
2,018,705	-				-4.0
2,018,705	-				+2.5
2,018,705	-				-0.1
2,018,740	-				+1.1
2,018,745	+				+0.4
2,018,745	+				-4.5
2,018,745	+				+1.5
2,018,746	-				+1.1
2,018,790	+				+0.3
2,018,790	+				-0.4
2,018,835	+				-1.6
2,018,835	+				-0.6
2,018,835	+				-1.0
2,018,836	-				-2.3
2,018,836	-				-0.3
2,018,836	-				-1.4
2,018,836	-				-0.7
2,018,988	+				+1.0
2,018,988	+				-2.0
2,018,988	+				+0.9
2,018,988	+				-0.9
2,018,989	-				-0.1
2,018,989	-				-2.6
2,018,992	+				+1.0
2,018,992	+				-0.9
2,018,992	+				-0.4
2,018,993	-				+2.8
2,018,993	-				+1.9
2,018,993	-				-2.6
2,018,993	-				-0.8
2,019,064	+				+1.2
2,019,064	+				-1.3
2,019,064	+				-0.4
2,019,065	-				+2.3
2,019,150	+				-0.4
2,019,150	+				-0.7
2,019,150	+				-0.6
2,019,150	+				-0.3
2,019,150	+				-0.3
2,019,150	+				-0.0
2,019,150	+				-1.7
2,019,150	+				+0.7
2,019,150	+				-1.1
2,019,150	+				+1.2
2,019,150	+				+0.1
2,019,151	-				-2.3
2,019,151	-				-0.1
2,019,151	-				+0.9
2,019,151	-				-0.1
2,019,151	-				+1.0
2,019,151	-				+1.9
2,019,154	+				-0.2
2,019,154	+				+0.3
2,019,154	+				+0.4
2,019,155	-				-0.1
2,019,155	-				-1.7
2,019,205	+				-2.8
2,019,474	+				-1.5
2,019,474	+				-1.4
2,019,474	+				+1.4
2,019,474	+				-0.7
2,019,474	+				+0.0
2,019,474	+				-0.6
2,019,475	-				-0.0
2,019,475	-				-2.0
2,019,561	+		Xcc-8004.2104.1	0.11	-1.4
2,019,561	+		Xcc-8004.2104.1	0.11	-0.4
2,019,561	+		Xcc-8004.2104.1	0.11	-0.6
2,019,561	+		Xcc-8004.2104.1	0.11	+1.1
2,019,561	+		Xcc-8004.2104.1	0.11	-2.7
2,019,561	+		Xcc-8004.2104.1	0.11	-2.1
2,019,562	-		Xcc-8004.2104.1	0.11	-0.6
2,019,576	+		Xcc-8004.2104.1	0.11	-2.0
2,019,577	-		Xcc-8004.2104.1	0.11	+1.4
2,019,577	-		Xcc-8004.2104.1	0.11	+0.7
2,019,585	+		Xcc-8004.2104.1	0.12	-3.6
2,019,586	-		Xcc-8004.2104.1	0.12	-1.2
2,019,586	-		Xcc-8004.2104.1	0.12	+0.6
2,019,586	-		Xcc-8004.2104.1	0.12	-1.6
2,019,586	-		Xcc-8004.2104.1	0.12	+1.3
2,019,594	+		Xcc-8004.2104.1	0.12	-1.4
2,019,594	+		Xcc-8004.2104.1	0.12	+1.8
2,019,594	+		Xcc-8004.2104.1	0.12	+0.8
2,019,594	+		Xcc-8004.2104.1	0.12	+1.4
2,019,594	+		Xcc-8004.2104.1	0.12	-1.0
2,019,595	-		Xcc-8004.2104.1	0.12	+0.9
2,019,595	-		Xcc-8004.2104.1	0.12	-0.3
2,019,600	+		Xcc-8004.2104.1	0.13	-0.1
2,019,600	+		Xcc-8004.2104.1	0.13	+1.0
2,019,600	+		Xcc-8004.2104.1	0.13	-1.7
2,019,600	+		Xcc-8004.2104.1	0.13	+1.0
2,019,600	+		Xcc-8004.2104.1	0.13	+0.4
2,019,600	+		Xcc-8004.2104.1	0.13	+0.8
2,019,600	+		Xcc-8004.2104.1	0.13	+1.5
2,019,600	+		Xcc-8004.2104.1	0.13	+0.4
2,019,601	-		Xcc-8004.2104.1	0.13	-1.4
2,019,601	-		Xcc-8004.2104.1	0.13	+1.6
2,019,601	-		Xcc-8004.2104.1	0.13	-0.1
2,019,601	-		Xcc-8004.2104.1	0.13	-0.7
2,019,601	-		Xcc-8004.2104.1	0.13	-3.2
2,019,601	-		Xcc-8004.2104.1	0.13	-3.0
2,019,601	-		Xcc-8004.2104.1	0.13	+0.2
2,019,843	+		Xcc-8004.2104.1	0.26	-0.5
2,019,843	+		Xcc-8004.2104.1	0.26	-1.1
2,019,843	+		Xcc-8004.2104.1	0.26	-0.1
2,019,843	+		Xcc-8004.2104.1	0.26	+0.0
2,019,844	-		Xcc-8004.2104.1	0.26	+1.2
2,019,844	-		Xcc-8004.2104.1	0.26	-0.8
2,019,844	-		Xcc-8004.2104.1	0.26	-0.9
2,019,844	-		Xcc-8004.2104.1	0.26	-1.3
2,019,844	-		Xcc-8004.2104.1	0.26	-2.4
2,019,844	-		Xcc-8004.2104.1	0.26	+1.6
2,019,844	-		Xcc-8004.2104.1	0.26	-1.1
2,019,844	-		Xcc-8004.2104.1	0.26	-1.2
2,019,844	-		Xcc-8004.2104.1	0.26	+0.8
2,019,844	-		Xcc-8004.2104.1	0.26	-0.3
2,019,888	+		Xcc-8004.2104.1	0.29	-0.4
2,019,900	+		Xcc-8004.2104.1	0.29	+0.6
2,019,900	+		Xcc-8004.2104.1	0.29	+1.3
2,019,900	+		Xcc-8004.2104.1	0.29	-2.6
2,019,901	-		Xcc-8004.2104.1	0.30	-2.6
2,019,901	-		Xcc-8004.2104.1	0.30	-0.5
2,019,901	-		Xcc-8004.2104.1	0.30	-3.2
2,019,901	-		Xcc-8004.2104.1	0.30	+0.0
2,019,901	-		Xcc-8004.2104.1	0.30	-1.1
2,019,901	-		Xcc-8004.2104.1	0.30	-0.3
2,019,901	-		Xcc-8004.2104.1	0.30	-0.9
2,019,933	+		Xcc-8004.2104.1	0.31	+0.5
2,019,933	+		Xcc-8004.2104.1	0.31	-2.0
2,019,933	+		Xcc-8004.2104.1	0.31	-2.9
2,019,933	+		Xcc-8004.2104.1	0.31	+0.0
2,019,933	+		Xcc-8004.2104.1	0.31	+0.9
2,019,933	+		Xcc-8004.2104.1	0.31	-0.2
2,019,934	-		Xcc-8004.2104.1	0.31	+0.8
2,020,212	+		Xcc-8004.2104.1	0.47	-1.6
2,020,212	+		Xcc-8004.2104.1	0.47	+0.0
2,020,213	-		Xcc-8004.2104.1	0.47	-2.1
2,020,213	-		Xcc-8004.2104.1	0.47	-0.6
2,020,213	-		Xcc-8004.2104.1	0.47	+1.0
2,020,230	+		Xcc-8004.2104.1	0.48	+2.2
2,020,282	+		Xcc-8004.2104.1	0.51	-2.1
2,020,283	-		Xcc-8004.2104.1	0.51	+0.4
2,020,294	+		Xcc-8004.2104.1	0.51	-1.3
2,020,294	+		Xcc-8004.2104.1	0.51	+1.4
2,020,294	+		Xcc-8004.2104.1	0.51	-0.3
2,020,294	+		Xcc-8004.2104.1	0.51	+1.7
2,020,295	-		Xcc-8004.2104.1	0.52	-0.9
2,020,335	+		Xcc-8004.2104.1	0.54	-0.7
2,020,335	+		Xcc-8004.2104.1	0.54	+0.9
2,020,335	+		Xcc-8004.2104.1	0.54	-0.4
2,020,335	+		Xcc-8004.2104.1	0.54	-0.8
2,020,336	-		Xcc-8004.2104.1	0.54	+1.4
2,020,336	-		Xcc-8004.2104.1	0.54	-0.5
2,020,336	-		Xcc-8004.2104.1	0.54	-2.6
2,020,596	+		Xcc-8004.2104.1	0.68	+1.0
2,020,596	+		Xcc-8004.2104.1	0.68	+0.3
2,020,596	+		Xcc-8004.2104.1	0.68	+4.0
2,020,596	+		Xcc-8004.2104.1	0.68	-2.0
2,020,596	+		Xcc-8004.2104.1	0.68	-0.8
2,020,596	+		Xcc-8004.2104.1	0.68	-0.4
2,020,596	+		Xcc-8004.2104.1	0.68	+1.1
2,020,596	+		Xcc-8004.2104.1	0.68	+1.5
2,020,596	+		Xcc-8004.2104.1	0.68	+0.6
2,020,596	+		Xcc-8004.2104.1	0.68	+1.0
2,020,597	-		Xcc-8004.2104.1	0.68	-0.0
2,020,597	-		Xcc-8004.2104.1	0.68	+3.7
2,020,597	-		Xcc-8004.2104.1	0.68	-1.1
2,020,597	-		Xcc-8004.2104.1	0.68	-0.3
2,020,597	-		Xcc-8004.2104.1	0.68	+1.8
2,020,597	-		Xcc-8004.2104.1	0.68	+2.4
2,020,597	-		Xcc-8004.2104.1	0.68	-0.6
2,020,597	-		Xcc-8004.2104.1	0.68	+0.4
2,020,914	+		Xcc-8004.2104.1	0.86	-2.0
2,020,914	+		Xcc-8004.2104.1	0.86	+1.0
2,020,914	+		Xcc-8004.2104.1	0.86	-1.4
2,020,914	+		Xcc-8004.2104.1	0.86	+0.9
2,020,915	-		Xcc-8004.2104.1	0.86	-0.7
2,020,915	-		Xcc-8004.2104.1	0.86	+1.2
2,020,915	-		Xcc-8004.2104.1	0.86	-1.4
2,020,915	-		Xcc-8004.2104.1	0.86	-0.7
2,020,915	-		Xcc-8004.2104.1	0.86	-3.6
2,021,074	+				-2.6
2,021,074	+				+0.2
2,021,075	-				+0.1
2,021,075	-				-1.1
2,021,075	-				+1.7
2,021,077	-				+0.3
2,021,118	+				+1.1
2,021,119	-				+0.7
2,021,119	-				+1.7
2,021,119	-				+1.0
2,021,154	+				+0.4
2,021,154	+				+0.0
2,021,154	+				+1.1
2,021,154	+				+1.4
2,021,154	+				+4.5
2,021,154	+				+0.0
2,021,154	+				-1.8
2,021,154	+				+1.4
2,021,155	-				-2.1
2,021,155	-				-1.4
2,021,155	-				+0.8
2,021,155	-				+0.0
2,021,155	-				-0.6
2,021,318	-		Xcc-8004.2105.1	0.24	-0.6
2,021,318	-		Xcc-8004.2105.1	0.24	-1.2
2,021,515	+		Xcc-8004.2105.1	0.65	-0.6
2,021,515	+		Xcc-8004.2105.1	0.65	-2.7
2,021,515	+		Xcc-8004.2105.1	0.65	-1.5
2,021,515	+		Xcc-8004.2105.1	0.65	-2.0
2,021,516	-		Xcc-8004.2105.1	0.65	-0.9
2,021,516	-		Xcc-8004.2105.1	0.65	-1.7
2,021,516	-		Xcc-8004.2105.1	0.65	-3.0
2,021,516	-		Xcc-8004.2105.1	0.65	-1.3
2,021,516	-		Xcc-8004.2105.1	0.65	-3.3
2,021,516	-		Xcc-8004.2105.1	0.65	-2.5
2,021,516	-		Xcc-8004.2105.1	0.65	-1.1
2,021,516	-		Xcc-8004.2105.1	0.65	+0.4
2,021,516	-		Xcc-8004.2105.1	0.65	+0.2
2,021,516	-		Xcc-8004.2105.1	0.65	-0.9
2,021,516	-		Xcc-8004.2105.1	0.65	-0.4
2,021,516	-		Xcc-8004.2105.1	0.65	-2.0
2,021,516	-		Xcc-8004.2105.1	0.65	-0.7
2,021,720	+				+1.2
2,021,720	+				-2.1
2,021,720	+				+0.0
2,021,720	+				+1.6
2,021,721	-				-0.9
2,021,721	-				-0.1
2,021,721	-				-0.4
2,021,721	-				-1.2
2,021,723	+				-1.3
2,021,723	+				-0.4
2,021,723	+				+0.3
2,021,723	+				+0.3
2,021,724	-				+0.8
2,021,724	-				+0.5
2,021,724	-				+3.3
2,021,724	-				+0.2
2,021,724	-				-2.1
2,021,724	-				-1.1
2,021,724	-				-1.1
2,021,724	-				-2.6
2,021,730	+				+1.0
2,021,730	+				-2.6
2,021,731	-				-0.8
2,021,798	+				-3.5
2,021,799	-				-1.1
2,021,879	+		Xcc-8004.2106.1	0.23	+1.4
2,021,879	+		Xcc-8004.2106.1	0.23	+1.4
2,021,879	+		Xcc-8004.2106.1	0.23	-2.0
2,021,879	+		Xcc-8004.2106.1	0.23	+1.3
2,021,879	+		Xcc-8004.2106.1	0.23	-0.3
2,021,880	-		Xcc-8004.2106.1	0.23	-2.7
2,021,880	-		Xcc-8004.2106.1	0.23	+3.0
2,021,880	-		Xcc-8004.2106.1	0.23	-1.8
2,021,880	-		Xcc-8004.2106.1	0.23	-1.2
2,021,880	-		Xcc-8004.2106.1	0.23	-1.9
2,021,880	-		Xcc-8004.2106.1	0.23	-0.5
2,021,916	-		Xcc-8004.2106.1	0.29	-1.6
2,021,916	-		Xcc-8004.2106.1	0.29	-3.1
2,021,942	+		Xcc-8004.2106.1	0.34	-1.6
2,021,942	+		Xcc-8004.2106.1	0.34	+0.8
2,021,942	+		Xcc-8004.2106.1	0.34	+0.1
2,021,942	+		Xcc-8004.2106.1	0.34	+0.4
2,021,942	+		Xcc-8004.2106.1	0.34	-0.6
2,021,942	+		Xcc-8004.2106.1	0.34	-0.4
2,021,942	+		Xcc-8004.2106.1	0.34	-0.3
2,021,943	-		Xcc-8004.2106.1	0.34	-0.7
2,021,943	-		Xcc-8004.2106.1	0.34	-0.6
2,021,943	-		Xcc-8004.2106.1	0.34	-1.1
2,022,113	+		Xcc-8004.2106.1	0.66	+0.1
2,022,113	+		Xcc-8004.2106.1	0.66	-1.5
2,022,113	+		Xcc-8004.2106.1	0.66	+1.1
2,022,113	+		Xcc-8004.2106.1	0.66	+0.3
2,022,113	+		Xcc-8004.2106.1	0.66	+1.1
2,022,113	+		Xcc-8004.2106.1	0.66	-0.8
2,022,113	+		Xcc-8004.2106.1	0.66	+0.9
2,022,113	+		Xcc-8004.2106.1	0.66	+1.6
2,022,113	+		Xcc-8004.2106.1	0.66	-2.0
2,022,113	+		Xcc-8004.2106.1	0.66	-0.6
2,022,113	+		Xcc-8004.2106.1	0.66	-1.7
2,022,114	-		Xcc-8004.2106.1	0.66	+0.2
2,022,114	-		Xcc-8004.2106.1	0.66	-0.5
2,022,114	-		Xcc-8004.2106.1	0.66	-0.7
2,022,114	-		Xcc-8004.2106.1	0.66	-0.5
2,022,114	-		Xcc-8004.2106.1	0.66	-0.5
2,022,114	-		Xcc-8004.2106.1	0.66	+0.7
2,022,114	-		Xcc-8004.2106.1	0.66	+2.4
2,022,114	-		Xcc-8004.2106.1	0.66	-0.2
2,022,114	-		Xcc-8004.2106.1	0.66	+2.4
2,022,126	+		Xcc-8004.2106.1	0.69	-2.3
2,022,126	+		Xcc-8004.2106.1	0.69	-3.3
2,022,127	-		Xcc-8004.2106.1	0.69	+0.4
2,022,160	+		Xcc-8004.2106.1	0.75	+1.7
2,022,160	+		Xcc-8004.2106.1	0.75	-0.1
2,022,160	+		Xcc-8004.2106.1	0.75	-0.6
2,022,160	+		Xcc-8004.2106.1	0.75	+0.1
2,022,160	+		Xcc-8004.2106.1	0.75	-0.3
2,022,161	-		Xcc-8004.2106.1	0.75	-2.6
2,022,161	-		Xcc-8004.2106.1	0.75	+3.2
2,022,161	-		Xcc-8004.2106.1	0.75	+1.1
2,022,161	-		Xcc-8004.2106.1	0.75	-0.4
2,022,161	-		Xcc-8004.2106.1	0.75	+1.3
2,022,161	-		Xcc-8004.2106.1	0.75	+1.4