Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1682.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1681.1 and Xcc-8004.1682.1 are separated by 54 nucleotidesXcc-8004.1682.1 and Xcc-8004.1683.1 are separated by 163 nucleotides Xcc-8004.1681.1: Xcc-8004.1681.1 - hypothetical protein, at 1,615,375 to 1,616,412 Xcc-8004.1681.1 Xcc-8004.1682.1: Xcc-8004.1682.1 - FIG01210990: hypothetical protein, at 1,616,467 to 1,616,739 Xcc-8004.1682.1 Xcc-8004.1683.1: Xcc-8004.1683.1 - succinyl-diaminopimelate desuccinylase, at 1,616,903 to 1,618,396 Xcc-8004.1683.1 Position (kb) 1616 1617Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1615.499 kb on + strand, within Xcc-8004.1681.1at 1615.499 kb on + strand, within Xcc-8004.1681.1at 1615.499 kb on + strand, within Xcc-8004.1681.1at 1615.499 kb on + strand, within Xcc-8004.1681.1at 1615.499 kb on + strand, within Xcc-8004.1681.1at 1615.499 kb on + strand, within Xcc-8004.1681.1at 1615.499 kb on + strand, within Xcc-8004.1681.1at 1615.499 kb on + strand, within Xcc-8004.1681.1at 1615.500 kb on - strand, within Xcc-8004.1681.1at 1615.529 kb on + strand, within Xcc-8004.1681.1at 1615.550 kb on + strand, within Xcc-8004.1681.1at 1615.673 kb on + strand, within Xcc-8004.1681.1at 1615.702 kb on + strand, within Xcc-8004.1681.1at 1615.748 kb on + strand, within Xcc-8004.1681.1at 1616.427 kb on + strandat 1616.428 kb on - strandat 1616.468 kb on + strandat 1616.468 kb on + strandat 1616.561 kb on + strand, within Xcc-8004.1682.1at 1616.573 kb on + strand, within Xcc-8004.1682.1at 1616.573 kb on + strand, within Xcc-8004.1682.1at 1616.573 kb on + strand, within Xcc-8004.1682.1at 1616.573 kb on + strand, within Xcc-8004.1682.1at 1616.573 kb on + strand, within Xcc-8004.1682.1at 1616.573 kb on + strand, within Xcc-8004.1682.1at 1616.573 kb on + strand, within Xcc-8004.1682.1at 1616.574 kb on - strand, within Xcc-8004.1682.1at 1616.659 kb on - strand, within Xcc-8004.1682.1at 1616.659 kb on - strand, within Xcc-8004.1682.1at 1616.705 kb on + strand, within Xcc-8004.1682.1at 1616.705 kb on + strand, within Xcc-8004.1682.1at 1616.705 kb on + strand, within Xcc-8004.1682.1at 1616.705 kb on + strand, within Xcc-8004.1682.1at 1616.705 kb on + strand, within Xcc-8004.1682.1at 1616.705 kb on + strand, within Xcc-8004.1682.1at 1616.705 kb on + strand, within Xcc-8004.1682.1at 1616.706 kb on - strand, within Xcc-8004.1682.1at 1616.706 kb on - strand, within Xcc-8004.1682.1at 1616.706 kb on - strand, within Xcc-8004.1682.1at 1616.771 kb on + strandat 1616.771 kb on + strandat 1616.771 kb on + strandat 1616.771 kb on + strandat 1616.772 kb on - strandat 1616.772 kb on - strandat 1616.772 kb on - strandat 1617.171 kb on + strand, within Xcc-8004.1683.1at 1617.171 kb on + strand, within Xcc-8004.1683.1at 1617.171 kb on + strand, within Xcc-8004.1683.1at 1617.171 kb on + strand, within Xcc-8004.1683.1at 1617.171 kb on + strand, within Xcc-8004.1683.1at 1617.171 kb on + strand, within Xcc-8004.1683.1at 1617.171 kb on + strand, within Xcc-8004.1683.1at 1617.171 kb on + strand, within Xcc-8004.1683.1at 1617.171 kb on + strand, within Xcc-8004.1683.1at 1617.172 kb on - strand, within Xcc-8004.1683.1at 1617.172 kb on - strand, within Xcc-8004.1683.1at 1617.172 kb on - strand, within Xcc-8004.1683.1at 1617.172 kb on - strand, within Xcc-8004.1683.1at 1617.172 kb on - strand, within Xcc-8004.1683.1at 1617.172 kb on - strand, within Xcc-8004.1683.1at 1617.172 kb on - strand, within Xcc-8004.1683.1at 1617.172 kb on - strand, within Xcc-8004.1683.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes)
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1,615,499 + Xcc-8004.1681.1 0.12 +1.6
1,615,499 + Xcc-8004.1681.1 0.12 +2.9
1,615,499 + Xcc-8004.1681.1 0.12 +1.5
1,615,499 + Xcc-8004.1681.1 0.12 -1.9
1,615,499 + Xcc-8004.1681.1 0.12 -2.1
1,615,499 + Xcc-8004.1681.1 0.12 +0.3
1,615,499 + Xcc-8004.1681.1 0.12 +1.4
1,615,499 + Xcc-8004.1681.1 0.12 -0.8
1,615,500 - Xcc-8004.1681.1 0.12 +3.0
1,615,529 + Xcc-8004.1681.1 0.15 -1.2
1,615,550 + Xcc-8004.1681.1 0.17 -0.5
1,615,673 + Xcc-8004.1681.1 0.29 +0.1
1,615,702 + Xcc-8004.1681.1 0.32 +3.5
1,615,748 + Xcc-8004.1681.1 0.36 -0.7
1,616,427 + -2.1
1,616,428 - +2.5
1,616,468 + +1.0
1,616,468 + -3.2
1,616,561 + Xcc-8004.1682.1 0.34 -1.0
1,616,573 + Xcc-8004.1682.1 0.39 -1.0
1,616,573 + Xcc-8004.1682.1 0.39 +0.5
1,616,573 + Xcc-8004.1682.1 0.39 +1.1
1,616,573 + Xcc-8004.1682.1 0.39 -0.1
1,616,573 + Xcc-8004.1682.1 0.39 +1.3
1,616,573 + Xcc-8004.1682.1 0.39 +0.3
1,616,573 + Xcc-8004.1682.1 0.39 -1.6
1,616,574 - Xcc-8004.1682.1 0.39 +0.6
1,616,659 - Xcc-8004.1682.1 0.70 +2.2
1,616,659 - Xcc-8004.1682.1 0.70 +1.0
1,616,705 + Xcc-8004.1682.1 0.87 -0.4
1,616,705 + Xcc-8004.1682.1 0.87 +1.7
1,616,705 + Xcc-8004.1682.1 0.87 -0.5
1,616,705 + Xcc-8004.1682.1 0.87 -0.5
1,616,705 + Xcc-8004.1682.1 0.87 -0.5
1,616,705 + Xcc-8004.1682.1 0.87 -0.7
1,616,705 + Xcc-8004.1682.1 0.87 -0.3
1,616,706 - Xcc-8004.1682.1 0.88 -1.5
1,616,706 - Xcc-8004.1682.1 0.88 +0.1
1,616,706 - Xcc-8004.1682.1 0.88 +1.9
1,616,771 + +0.5
1,616,771 + +1.5
1,616,771 + -1.7
1,616,771 + +2.2
1,616,772 - +1.1
1,616,772 - +0.9
1,616,772 - -1.6
1,617,171 + Xcc-8004.1683.1 0.18 +0.8
1,617,171 + Xcc-8004.1683.1 0.18 +0.5
1,617,171 + Xcc-8004.1683.1 0.18 -2.3
1,617,171 + Xcc-8004.1683.1 0.18 -0.9
1,617,171 + Xcc-8004.1683.1 0.18 -0.1
1,617,171 + Xcc-8004.1683.1 0.18 -0.5
1,617,171 + Xcc-8004.1683.1 0.18 -0.9
1,617,171 + Xcc-8004.1683.1 0.18 -0.5
1,617,171 + Xcc-8004.1683.1 0.18 -0.1
1,617,172 - Xcc-8004.1683.1 0.18 -3.2
1,617,172 - Xcc-8004.1683.1 0.18 +0.4
1,617,172 - Xcc-8004.1683.1 0.18 -1.1
1,617,172 - Xcc-8004.1683.1 0.18 +1.8
1,617,172 - Xcc-8004.1683.1 0.18 -0.0
1,617,172 - Xcc-8004.1683.1 0.18 +0.0
1,617,172 - Xcc-8004.1683.1 0.18 -1.5
1,617,172 - Xcc-8004.1683.1 0.18 -1.8

Or see this region's nucleotide sequence