Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1487.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1485.1 and Xcc-8004.1486.1 overlap by 4 nucleotidesXcc-8004.1486.1 and Xcc-8004.1487.1 overlap by 4 nucleotidesXcc-8004.1487.1 and Xcc-8004.1488.1 overlap by 4 nucleotides Xcc-8004.1485.1: Xcc-8004.1485.1 - Coenzyme PQQ synthesis protein E, at 1,415,010 to 1,416,140 Xcc-8004.1485.1 Xcc-8004.1486.1: Xcc-8004.1486.1 - Coenzyme PQQ synthesis protein D, at 1,416,137 to 1,416,415 Xcc-8004.1486.1 Xcc-8004.1487.1: Xcc-8004.1487.1 - hypothetical protein, at 1,416,412 to 1,417,164 Xcc-8004.1487.1 Xcc-8004.1488.1: Xcc-8004.1488.1 - Coenzyme PQQ synthesis protein B, at 1,417,161 to 1,418,060 Xcc-8004.1488.1 Position (kb) 1416 1417 1418Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1415.450 kb on - strand, within Xcc-8004.1485.1at 1415.453 kb on - strand, within Xcc-8004.1485.1at 1415.584 kb on + strand, within Xcc-8004.1485.1at 1415.585 kb on - strand, within Xcc-8004.1485.1at 1415.585 kb on - strand, within Xcc-8004.1485.1at 1415.585 kb on - strand, within Xcc-8004.1485.1at 1415.588 kb on - strand, within Xcc-8004.1485.1at 1415.588 kb on - strand, within Xcc-8004.1485.1at 1415.588 kb on - strand, within Xcc-8004.1485.1at 1415.594 kb on + strand, within Xcc-8004.1485.1at 1415.594 kb on + strand, within Xcc-8004.1485.1at 1415.594 kb on + strand, within Xcc-8004.1485.1at 1415.594 kb on + strand, within Xcc-8004.1485.1at 1415.595 kb on - strand, within Xcc-8004.1485.1at 1415.595 kb on - strand, within Xcc-8004.1485.1at 1415.890 kb on + strand, within Xcc-8004.1485.1at 1415.890 kb on + strand, within Xcc-8004.1485.1at 1415.890 kb on + strand, within Xcc-8004.1485.1at 1415.891 kb on - strand, within Xcc-8004.1485.1at 1415.891 kb on - strand, within Xcc-8004.1485.1at 1415.891 kb on - strand, within Xcc-8004.1485.1at 1415.891 kb on - strand, within Xcc-8004.1485.1at 1416.070 kb on + strandat 1416.070 kb on + strandat 1416.071 kb on - strandat 1416.111 kb on + strandat 1416.112 kb on - strandat 1416.332 kb on + strand, within Xcc-8004.1486.1at 1416.332 kb on + strand, within Xcc-8004.1486.1at 1416.368 kb on + strand, within Xcc-8004.1486.1at 1416.483 kb on - strandat 1416.517 kb on + strand, within Xcc-8004.1487.1at 1416.517 kb on + strand, within Xcc-8004.1487.1at 1416.518 kb on - strand, within Xcc-8004.1487.1at 1416.590 kb on + strand, within Xcc-8004.1487.1at 1416.590 kb on + strand, within Xcc-8004.1487.1at 1416.590 kb on + strand, within Xcc-8004.1487.1at 1416.590 kb on + strand, within Xcc-8004.1487.1at 1416.644 kb on + strand, within Xcc-8004.1487.1at 1416.675 kb on - strand, within Xcc-8004.1487.1at 1416.785 kb on + strand, within Xcc-8004.1487.1at 1416.786 kb on - strand, within Xcc-8004.1487.1at 1416.868 kb on + strand, within Xcc-8004.1487.1at 1417.011 kb on - strand, within Xcc-8004.1487.1at 1417.011 kb on - strand, within Xcc-8004.1487.1at 1417.101 kb on - strandat 1417.101 kb on - strandat 1417.271 kb on + strand, within Xcc-8004.1488.1at 1417.271 kb on + strand, within Xcc-8004.1488.1at 1417.486 kb on + strand, within Xcc-8004.1488.1at 1417.486 kb on + strand, within Xcc-8004.1488.1at 1417.487 kb on - strand, within Xcc-8004.1488.1at 1417.575 kb on - strand, within Xcc-8004.1488.1at 1417.641 kb on - strand, within Xcc-8004.1488.1at 1417.669 kb on + strand, within Xcc-8004.1488.1at 1417.938 kb on - strand, within Xcc-8004.1488.1at 1417.949 kb on + strand, within Xcc-8004.1488.1at 1418.071 kb on + strandat 1418.071 kb on + strandat 1418.072 kb on - strandat 1418.072 kb on - strandat 1418.072 kb on - strandat 1418.146 kb on + strandat 1418.146 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes)
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1,415,450 - Xcc-8004.1485.1 0.39 -2.4
1,415,453 - Xcc-8004.1485.1 0.39 +0.0
1,415,584 + Xcc-8004.1485.1 0.51 -0.4
1,415,585 - Xcc-8004.1485.1 0.51 -0.0
1,415,585 - Xcc-8004.1485.1 0.51 -2.7
1,415,585 - Xcc-8004.1485.1 0.51 -0.0
1,415,588 - Xcc-8004.1485.1 0.51 +1.9
1,415,588 - Xcc-8004.1485.1 0.51 -1.0
1,415,588 - Xcc-8004.1485.1 0.51 -0.9
1,415,594 + Xcc-8004.1485.1 0.52 +0.6
1,415,594 + Xcc-8004.1485.1 0.52 +2.6
1,415,594 + Xcc-8004.1485.1 0.52 -1.4
1,415,594 + Xcc-8004.1485.1 0.52 +3.0
1,415,595 - Xcc-8004.1485.1 0.52 -1.2
1,415,595 - Xcc-8004.1485.1 0.52 +0.1
1,415,890 + Xcc-8004.1485.1 0.78 -0.5
1,415,890 + Xcc-8004.1485.1 0.78 +0.6
1,415,890 + Xcc-8004.1485.1 0.78 +0.5
1,415,891 - Xcc-8004.1485.1 0.78 +1.6
1,415,891 - Xcc-8004.1485.1 0.78 -0.8
1,415,891 - Xcc-8004.1485.1 0.78 -2.0
1,415,891 - Xcc-8004.1485.1 0.78 -0.3
1,416,070 + -0.9
1,416,070 + -2.8
1,416,071 - -0.6
1,416,111 + -0.4
1,416,112 - +2.7
1,416,332 + Xcc-8004.1486.1 0.70 +0.4
1,416,332 + Xcc-8004.1486.1 0.70 +1.5
1,416,368 + Xcc-8004.1486.1 0.83 +0.3
1,416,483 - -1.3
1,416,517 + Xcc-8004.1487.1 0.14 +0.1
1,416,517 + Xcc-8004.1487.1 0.14 -2.7
1,416,518 - Xcc-8004.1487.1 0.14 -1.3
1,416,590 + Xcc-8004.1487.1 0.24 +0.3
1,416,590 + Xcc-8004.1487.1 0.24 -0.2
1,416,590 + Xcc-8004.1487.1 0.24 +0.3
1,416,590 + Xcc-8004.1487.1 0.24 +0.2
1,416,644 + Xcc-8004.1487.1 0.31 +0.5
1,416,675 - Xcc-8004.1487.1 0.35 -1.6
1,416,785 + Xcc-8004.1487.1 0.50 -0.7
1,416,786 - Xcc-8004.1487.1 0.50 +5.2
1,416,868 + Xcc-8004.1487.1 0.61 +0.6
1,417,011 - Xcc-8004.1487.1 0.80 -0.7
1,417,011 - Xcc-8004.1487.1 0.80 +1.6
1,417,101 - +0.7
1,417,101 - +0.9
1,417,271 + Xcc-8004.1488.1 0.12 -1.6
1,417,271 + Xcc-8004.1488.1 0.12 +0.5
1,417,486 + Xcc-8004.1488.1 0.36 -1.7
1,417,486 + Xcc-8004.1488.1 0.36 -2.5
1,417,487 - Xcc-8004.1488.1 0.36 -0.9
1,417,575 - Xcc-8004.1488.1 0.46 -0.4
1,417,641 - Xcc-8004.1488.1 0.53 -2.0
1,417,669 + Xcc-8004.1488.1 0.56 -1.2
1,417,938 - Xcc-8004.1488.1 0.86 -1.7
1,417,949 + Xcc-8004.1488.1 0.88 +0.6
1,418,071 + -2.3
1,418,071 + +2.2
1,418,072 - -0.1
1,418,072 - -0.6
1,418,072 - -2.3
1,418,146 + -0.5
1,418,146 + +1.1

Or see this region's nucleotide sequence