Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1484.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1483.1 and Xcc-8004.1484.1 are separated by 262 nucleotidesXcc-8004.1484.1 and Xcc-8004.1485.1 are separated by 60 nucleotides Xcc-8004.1483.1: Xcc-8004.1483.1 - PhoP/Q-regulated protein PqaA, at 1,412,687 to 1,414,174 Xcc-8004.1483.1 Xcc-8004.1484.1: Xcc-8004.1484.1 - FIG01210307: hypothetical protein, at 1,414,437 to 1,414,949 Xcc-8004.1484.1 Xcc-8004.1485.1: Xcc-8004.1485.1 - Coenzyme PQQ synthesis protein E, at 1,415,010 to 1,416,140 Xcc-8004.1485.1 Position (kb) 1414 1415Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1413.641 kb on - strand, within Xcc-8004.1483.1at 1413.703 kb on - strand, within Xcc-8004.1483.1at 1413.888 kb on + strand, within Xcc-8004.1483.1at 1413.888 kb on + strand, within Xcc-8004.1483.1at 1413.888 kb on + strand, within Xcc-8004.1483.1at 1413.888 kb on + strand, within Xcc-8004.1483.1at 1413.889 kb on - strand, within Xcc-8004.1483.1at 1413.889 kb on - strand, within Xcc-8004.1483.1at 1413.889 kb on - strand, within Xcc-8004.1483.1at 1413.889 kb on - strand, within Xcc-8004.1483.1at 1413.963 kb on + strand, within Xcc-8004.1483.1at 1413.964 kb on - strand, within Xcc-8004.1483.1at 1413.964 kb on - strand, within Xcc-8004.1483.1at 1413.964 kb on - strand, within Xcc-8004.1483.1at 1413.964 kb on - strand, within Xcc-8004.1483.1at 1414.003 kb on + strand, within Xcc-8004.1483.1at 1414.004 kb on - strand, within Xcc-8004.1483.1at 1414.439 kb on - strandat 1414.439 kb on - strandat 1414.439 kb on - strandat 1414.439 kb on - strandat 1414.471 kb on + strandat 1414.472 kb on - strandat 1414.472 kb on - strandat 1414.472 kb on - strandat 1414.489 kb on + strand, within Xcc-8004.1484.1at 1414.489 kb on + strand, within Xcc-8004.1484.1at 1414.489 kb on + strand, within Xcc-8004.1484.1at 1414.489 kb on + strand, within Xcc-8004.1484.1at 1414.489 kb on + strand, within Xcc-8004.1484.1at 1414.490 kb on - strand, within Xcc-8004.1484.1at 1414.490 kb on - strand, within Xcc-8004.1484.1at 1414.490 kb on - strand, within Xcc-8004.1484.1at 1414.490 kb on - strand, within Xcc-8004.1484.1at 1414.490 kb on - strand, within Xcc-8004.1484.1at 1414.490 kb on - strand, within Xcc-8004.1484.1at 1414.600 kb on + strand, within Xcc-8004.1484.1at 1414.600 kb on + strand, within Xcc-8004.1484.1at 1414.600 kb on + strand, within Xcc-8004.1484.1at 1414.601 kb on - strand, within Xcc-8004.1484.1at 1414.601 kb on - strand, within Xcc-8004.1484.1at 1414.601 kb on - strand, within Xcc-8004.1484.1at 1414.601 kb on - strand, within Xcc-8004.1484.1at 1414.900 kb on - strandat 1414.981 kb on + strandat 1414.981 kb on + strandat 1414.981 kb on + strandat 1414.981 kb on + strandat 1414.981 kb on + strandat 1414.982 kb on - strandat 1414.982 kb on - strandat 1414.982 kb on - strandat 1414.982 kb on - strandat 1414.982 kb on - strandat 1415.303 kb on + strand, within Xcc-8004.1485.1at 1415.396 kb on + strand, within Xcc-8004.1485.1at 1415.396 kb on + strand, within Xcc-8004.1485.1at 1415.397 kb on - strand, within Xcc-8004.1485.1at 1415.397 kb on - strand, within Xcc-8004.1485.1at 1415.397 kb on - strand, within Xcc-8004.1485.1at 1415.450 kb on - strand, within Xcc-8004.1485.1at 1415.453 kb on - strand, within Xcc-8004.1485.1at 1415.584 kb on + strand, within Xcc-8004.1485.1at 1415.585 kb on - strand, within Xcc-8004.1485.1at 1415.585 kb on - strand, within Xcc-8004.1485.1at 1415.585 kb on - strand, within Xcc-8004.1485.1at 1415.588 kb on - strand, within Xcc-8004.1485.1at 1415.588 kb on - strand, within Xcc-8004.1485.1at 1415.588 kb on - strand, within Xcc-8004.1485.1at 1415.594 kb on + strand, within Xcc-8004.1485.1at 1415.594 kb on + strand, within Xcc-8004.1485.1at 1415.594 kb on + strand, within Xcc-8004.1485.1at 1415.594 kb on + strand, within Xcc-8004.1485.1at 1415.595 kb on - strand, within Xcc-8004.1485.1at 1415.595 kb on - strand, within Xcc-8004.1485.1at 1415.890 kb on + strand, within Xcc-8004.1485.1at 1415.890 kb on + strand, within Xcc-8004.1485.1at 1415.890 kb on + strand, within Xcc-8004.1485.1at 1415.891 kb on - strand, within Xcc-8004.1485.1at 1415.891 kb on - strand, within Xcc-8004.1485.1at 1415.891 kb on - strand, within Xcc-8004.1485.1at 1415.891 kb on - strand, within Xcc-8004.1485.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes)
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1,413,641 - Xcc-8004.1483.1 0.64 +0.5
1,413,703 - Xcc-8004.1483.1 0.68 +1.1
1,413,888 + Xcc-8004.1483.1 0.81 -2.0
1,413,888 + Xcc-8004.1483.1 0.81 -0.6
1,413,888 + Xcc-8004.1483.1 0.81 +0.1
1,413,888 + Xcc-8004.1483.1 0.81 +1.3
1,413,889 - Xcc-8004.1483.1 0.81 +3.1
1,413,889 - Xcc-8004.1483.1 0.81 -1.2
1,413,889 - Xcc-8004.1483.1 0.81 +0.8
1,413,889 - Xcc-8004.1483.1 0.81 -0.8
1,413,963 + Xcc-8004.1483.1 0.86 -2.6
1,413,964 - Xcc-8004.1483.1 0.86 +5.3
1,413,964 - Xcc-8004.1483.1 0.86 +2.2
1,413,964 - Xcc-8004.1483.1 0.86 +1.7
1,413,964 - Xcc-8004.1483.1 0.86 -1.0
1,414,003 + Xcc-8004.1483.1 0.88 +2.6
1,414,004 - Xcc-8004.1483.1 0.89 -0.7
1,414,439 - -1.0
1,414,439 - +1.3
1,414,439 - +0.1
1,414,439 - +0.1
1,414,471 + -0.2
1,414,472 - -0.7
1,414,472 - +1.3
1,414,472 - -3.1
1,414,489 + Xcc-8004.1484.1 0.10 -0.4
1,414,489 + Xcc-8004.1484.1 0.10 +0.4
1,414,489 + Xcc-8004.1484.1 0.10 -2.8
1,414,489 + Xcc-8004.1484.1 0.10 -2.0
1,414,489 + Xcc-8004.1484.1 0.10 -1.0
1,414,490 - Xcc-8004.1484.1 0.10 -0.7
1,414,490 - Xcc-8004.1484.1 0.10 -2.2
1,414,490 - Xcc-8004.1484.1 0.10 -1.2
1,414,490 - Xcc-8004.1484.1 0.10 -2.0
1,414,490 - Xcc-8004.1484.1 0.10 -1.1
1,414,490 - Xcc-8004.1484.1 0.10 -0.2
1,414,600 + Xcc-8004.1484.1 0.32 -1.9
1,414,600 + Xcc-8004.1484.1 0.32 -0.7
1,414,600 + Xcc-8004.1484.1 0.32 +0.6
1,414,601 - Xcc-8004.1484.1 0.32 -1.0
1,414,601 - Xcc-8004.1484.1 0.32 +1.3
1,414,601 - Xcc-8004.1484.1 0.32 -1.5
1,414,601 - Xcc-8004.1484.1 0.32 +2.7
1,414,900 - -2.1
1,414,981 + -0.4
1,414,981 + +0.2
1,414,981 + +0.8
1,414,981 + -0.1
1,414,981 + -1.0
1,414,982 - -2.2
1,414,982 - +0.3
1,414,982 - -1.3
1,414,982 - -2.7
1,414,982 - +1.2
1,415,303 + Xcc-8004.1485.1 0.26 -1.4
1,415,396 + Xcc-8004.1485.1 0.34 -2.5
1,415,396 + Xcc-8004.1485.1 0.34 +0.6
1,415,397 - Xcc-8004.1485.1 0.34 -1.2
1,415,397 - Xcc-8004.1485.1 0.34 +1.7
1,415,397 - Xcc-8004.1485.1 0.34 -2.2
1,415,450 - Xcc-8004.1485.1 0.39 -2.4
1,415,453 - Xcc-8004.1485.1 0.39 +0.0
1,415,584 + Xcc-8004.1485.1 0.51 -0.4
1,415,585 - Xcc-8004.1485.1 0.51 -0.0
1,415,585 - Xcc-8004.1485.1 0.51 -2.7
1,415,585 - Xcc-8004.1485.1 0.51 -0.0
1,415,588 - Xcc-8004.1485.1 0.51 +1.9
1,415,588 - Xcc-8004.1485.1 0.51 -1.0
1,415,588 - Xcc-8004.1485.1 0.51 -0.9
1,415,594 + Xcc-8004.1485.1 0.52 +0.6
1,415,594 + Xcc-8004.1485.1 0.52 +2.6
1,415,594 + Xcc-8004.1485.1 0.52 -1.4
1,415,594 + Xcc-8004.1485.1 0.52 +3.0
1,415,595 - Xcc-8004.1485.1 0.52 -1.2
1,415,595 - Xcc-8004.1485.1 0.52 +0.1
1,415,890 + Xcc-8004.1485.1 0.78 -0.5
1,415,890 + Xcc-8004.1485.1 0.78 +0.6
1,415,890 + Xcc-8004.1485.1 0.78 +0.5
1,415,891 - Xcc-8004.1485.1 0.78 +1.6
1,415,891 - Xcc-8004.1485.1 0.78 -0.8
1,415,891 - Xcc-8004.1485.1 0.78 -2.0
1,415,891 - Xcc-8004.1485.1 0.78 -0.3

Or see this region's nucleotide sequence