Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1130.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1129.1 and Xcc-8004.1130.1 overlap by 133 nucleotidesXcc-8004.1130.1 and Xcc-8004.1132.1 are separated by 776 nucleotides Xcc-8004.1129.1: Xcc-8004.1129.1 - Oar protein, at 1,076,764 to 1,078,581 Xcc-8004.1129.1 Xcc-8004.1130.1: Xcc-8004.1130.1 - Oar protein, at 1,078,449 to 1,079,936 Xcc-8004.1130.1 Xcc-8004.1132.1: Xcc-8004.1132.1 - Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3), at 1,080,713 to 1,081,420 Xcc-8004.1132.1 Position (kb) 1078 1079 1080Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1077.559 kb on + strand, within Xcc-8004.1129.1at 1077.559 kb on + strand, within Xcc-8004.1129.1at 1077.559 kb on + strand, within Xcc-8004.1129.1at 1077.559 kb on + strand, within Xcc-8004.1129.1at 1077.559 kb on + strand, within Xcc-8004.1129.1at 1077.559 kb on + strand, within Xcc-8004.1129.1at 1077.559 kb on + strand, within Xcc-8004.1129.1at 1077.559 kb on + strand, within Xcc-8004.1129.1at 1077.560 kb on - strand, within Xcc-8004.1129.1at 1077.560 kb on - strand, within Xcc-8004.1129.1at 1077.604 kb on + strand, within Xcc-8004.1129.1at 1077.635 kb on - strand, within Xcc-8004.1129.1at 1077.673 kb on + strand, within Xcc-8004.1129.1at 1077.674 kb on - strand, within Xcc-8004.1129.1at 1077.674 kb on - strand, within Xcc-8004.1129.1at 1077.674 kb on - strand, within Xcc-8004.1129.1at 1077.674 kb on - strand, within Xcc-8004.1129.1at 1077.682 kb on + strand, within Xcc-8004.1129.1at 1077.682 kb on + strand, within Xcc-8004.1129.1at 1077.682 kb on + strand, within Xcc-8004.1129.1at 1077.683 kb on - strand, within Xcc-8004.1129.1at 1077.811 kb on + strand, within Xcc-8004.1129.1at 1077.812 kb on - strand, within Xcc-8004.1129.1at 1077.818 kb on - strand, within Xcc-8004.1129.1at 1077.818 kb on - strand, within Xcc-8004.1129.1at 1077.818 kb on - strand, within Xcc-8004.1129.1at 1077.818 kb on - strand, within Xcc-8004.1129.1at 1077.818 kb on - strand, within Xcc-8004.1129.1at 1077.835 kb on + strand, within Xcc-8004.1129.1at 1077.922 kb on + strand, within Xcc-8004.1129.1at 1077.922 kb on + strand, within Xcc-8004.1129.1at 1077.922 kb on + strand, within Xcc-8004.1129.1at 1077.923 kb on - strand, within Xcc-8004.1129.1at 1077.923 kb on - strand, within Xcc-8004.1129.1at 1077.923 kb on - strand, within Xcc-8004.1129.1at 1077.928 kb on + strand, within Xcc-8004.1129.1at 1077.929 kb on - strand, within Xcc-8004.1129.1at 1077.934 kb on + strand, within Xcc-8004.1129.1at 1077.935 kb on - strand, within Xcc-8004.1129.1at 1077.935 kb on - strand, within Xcc-8004.1129.1at 1078.012 kb on + strand, within Xcc-8004.1129.1at 1078.012 kb on + strand, within Xcc-8004.1129.1at 1078.021 kb on + strand, within Xcc-8004.1129.1at 1078.055 kb on - strand, within Xcc-8004.1129.1at 1078.096 kb on + strand, within Xcc-8004.1129.1at 1078.097 kb on - strand, within Xcc-8004.1129.1at 1078.097 kb on - strand, within Xcc-8004.1129.1at 1078.351 kb on + strand, within Xcc-8004.1129.1at 1078.351 kb on + strand, within Xcc-8004.1129.1at 1078.351 kb on + strand, within Xcc-8004.1129.1at 1078.351 kb on + strand, within Xcc-8004.1129.1at 1078.352 kb on - strand, within Xcc-8004.1129.1at 1078.476 kb on + strandat 1078.479 kb on + strandat 1078.479 kb on + strandat 1078.479 kb on + strandat 1078.480 kb on - strandat 1078.480 kb on - strandat 1078.480 kb on - strandat 1078.480 kb on - strandat 1078.487 kb on - strandat 1078.509 kb on + strandat 1078.510 kb on - strandat 1078.536 kb on + strandat 1078.537 kb on - strandat 1078.539 kb on + strandat 1078.539 kb on + strandat 1078.614 kb on + strand, within Xcc-8004.1130.1at 1078.615 kb on - strand, within Xcc-8004.1130.1at 1078.615 kb on - strand, within Xcc-8004.1130.1at 1078.615 kb on - strand, within Xcc-8004.1130.1at 1078.615 kb on - strand, within Xcc-8004.1130.1at 1078.615 kb on - strand, within Xcc-8004.1130.1at 1078.636 kb on - strand, within Xcc-8004.1130.1at 1078.638 kb on - strand, within Xcc-8004.1130.1at 1078.735 kb on - strand, within Xcc-8004.1130.1at 1078.735 kb on - strand, within Xcc-8004.1130.1at 1078.735 kb on - strand, within Xcc-8004.1130.1at 1078.794 kb on + strand, within Xcc-8004.1130.1at 1078.795 kb on - strand, within Xcc-8004.1130.1at 1078.795 kb on - strand, within Xcc-8004.1130.1at 1078.795 kb on - strand, within Xcc-8004.1130.1at 1078.797 kb on + strand, within Xcc-8004.1130.1at 1078.797 kb on + strand, within Xcc-8004.1130.1at 1078.797 kb on + strand, within Xcc-8004.1130.1at 1078.798 kb on - strand, within Xcc-8004.1130.1at 1078.798 kb on - strand, within Xcc-8004.1130.1at 1078.798 kb on - strand, within Xcc-8004.1130.1at 1078.798 kb on - strand, within Xcc-8004.1130.1at 1078.798 kb on - strand, within Xcc-8004.1130.1at 1078.798 kb on - strand, within Xcc-8004.1130.1at 1078.798 kb on - strand, within Xcc-8004.1130.1at 1078.803 kb on + strand, within Xcc-8004.1130.1at 1078.803 kb on + strand, within Xcc-8004.1130.1at 1078.803 kb on + strand, within Xcc-8004.1130.1at 1078.804 kb on - strand, within Xcc-8004.1130.1at 1079.040 kb on + strand, within Xcc-8004.1130.1at 1079.041 kb on - strand, within Xcc-8004.1130.1at 1079.041 kb on - strand, within Xcc-8004.1130.1at 1079.041 kb on - strand, within Xcc-8004.1130.1at 1079.235 kb on + strand, within Xcc-8004.1130.1at 1079.235 kb on + strand, within Xcc-8004.1130.1at 1079.298 kb on + strand, within Xcc-8004.1130.1at 1079.298 kb on + strand, within Xcc-8004.1130.1at 1079.299 kb on - strand, within Xcc-8004.1130.1at 1079.299 kb on - strand, within Xcc-8004.1130.1at 1079.299 kb on - strand, within Xcc-8004.1130.1at 1079.299 kb on - strand, within Xcc-8004.1130.1at 1079.312 kb on + strand, within Xcc-8004.1130.1at 1079.312 kb on + strand, within Xcc-8004.1130.1at 1079.313 kb on - strand, within Xcc-8004.1130.1at 1079.316 kb on + strand, within Xcc-8004.1130.1at 1079.316 kb on + strand, within Xcc-8004.1130.1at 1079.316 kb on + strand, within Xcc-8004.1130.1at 1079.317 kb on - strand, within Xcc-8004.1130.1at 1079.496 kb on + strand, within Xcc-8004.1130.1at 1079.496 kb on + strand, within Xcc-8004.1130.1at 1079.497 kb on - strand, within Xcc-8004.1130.1at 1079.497 kb on - strand, within Xcc-8004.1130.1at 1079.497 kb on - strand, within Xcc-8004.1130.1at 1079.575 kb on - strand, within Xcc-8004.1130.1at 1079.643 kb on + strand, within Xcc-8004.1130.1at 1079.649 kb on + strand, within Xcc-8004.1130.1at 1079.649 kb on + strand, within Xcc-8004.1130.1at 1079.656 kb on - strand, within Xcc-8004.1130.1at 1079.656 kb on - strand, within Xcc-8004.1130.1at 1079.746 kb on - strand, within Xcc-8004.1130.1at 1079.829 kb on + strandat 1079.830 kb on - strandat 1079.934 kb on + strandat 1079.935 kb on - strandat 1079.935 kb on - strandat 1079.975 kb on + strandat 1080.037 kb on + strandat 1080.038 kb on - strandat 1080.271 kb on + strandat 1080.271 kb on + strandat 1080.271 kb on + strandat 1080.272 kb on - strandat 1080.282 kb on - strandat 1080.309 kb on + strandat 1080.357 kb on + strandat 1080.357 kb on + strandat 1080.357 kb on + strandat 1080.358 kb on - strandat 1080.358 kb on - strandat 1080.392 kb on - strandat 1080.399 kb on + strandat 1080.403 kb on + strandat 1080.403 kb on + strandat 1080.403 kb on + strandat 1080.545 kb on + strandat 1080.546 kb on - strandat 1080.546 kb on - strandat 1080.549 kb on + strandat 1080.549 kb on + strandat 1080.550 kb on - strandat 1080.569 kb on - strandat 1080.684 kb on - strandat 1080.715 kb on - strandat 1080.721 kb on + strandat 1080.772 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes)
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1,077,559 + Xcc-8004.1129.1 0.44 -1.2
1,077,559 + Xcc-8004.1129.1 0.44 -0.9
1,077,559 + Xcc-8004.1129.1 0.44 -2.1
1,077,559 + Xcc-8004.1129.1 0.44 -2.5
1,077,559 + Xcc-8004.1129.1 0.44 +1.6
1,077,559 + Xcc-8004.1129.1 0.44 +0.5
1,077,559 + Xcc-8004.1129.1 0.44 +0.0
1,077,559 + Xcc-8004.1129.1 0.44 +0.7
1,077,560 - Xcc-8004.1129.1 0.44 -3.6
1,077,560 - Xcc-8004.1129.1 0.44 -2.5
1,077,604 + Xcc-8004.1129.1 0.46 -1.1
1,077,635 - Xcc-8004.1129.1 0.48 +1.2
1,077,673 + Xcc-8004.1129.1 0.50 -0.2
1,077,674 - Xcc-8004.1129.1 0.50 -0.8
1,077,674 - Xcc-8004.1129.1 0.50 -1.4
1,077,674 - Xcc-8004.1129.1 0.50 +0.2
1,077,674 - Xcc-8004.1129.1 0.50 +0.1
1,077,682 + Xcc-8004.1129.1 0.50 +2.8
1,077,682 + Xcc-8004.1129.1 0.50 -1.9
1,077,682 + Xcc-8004.1129.1 0.50 -1.5
1,077,683 - Xcc-8004.1129.1 0.51 -0.5
1,077,811 + Xcc-8004.1129.1 0.58 -0.9
1,077,812 - Xcc-8004.1129.1 0.58 -0.2
1,077,818 - Xcc-8004.1129.1 0.58 -1.5
1,077,818 - Xcc-8004.1129.1 0.58 +0.3
1,077,818 - Xcc-8004.1129.1 0.58 -2.3
1,077,818 - Xcc-8004.1129.1 0.58 -0.8
1,077,818 - Xcc-8004.1129.1 0.58 -0.9
1,077,835 + Xcc-8004.1129.1 0.59 -1.3
1,077,922 + Xcc-8004.1129.1 0.64 -0.6
1,077,922 + Xcc-8004.1129.1 0.64 -0.9
1,077,922 + Xcc-8004.1129.1 0.64 +1.6
1,077,923 - Xcc-8004.1129.1 0.64 +0.8
1,077,923 - Xcc-8004.1129.1 0.64 -0.2
1,077,923 - Xcc-8004.1129.1 0.64 -0.8
1,077,928 + Xcc-8004.1129.1 0.64 +0.8
1,077,929 - Xcc-8004.1129.1 0.64 +0.1
1,077,934 + Xcc-8004.1129.1 0.64 -3.2
1,077,935 - Xcc-8004.1129.1 0.64 -0.4
1,077,935 - Xcc-8004.1129.1 0.64 -0.7
1,078,012 + Xcc-8004.1129.1 0.69 +2.2
1,078,012 + Xcc-8004.1129.1 0.69 +0.2
1,078,021 + Xcc-8004.1129.1 0.69 -1.4
1,078,055 - Xcc-8004.1129.1 0.71 -2.9
1,078,096 + Xcc-8004.1129.1 0.73 -0.4
1,078,097 - Xcc-8004.1129.1 0.73 -0.4
1,078,097 - Xcc-8004.1129.1 0.73 -1.3
1,078,351 + Xcc-8004.1129.1 0.87 +0.8
1,078,351 + Xcc-8004.1129.1 0.87 +1.8
1,078,351 + Xcc-8004.1129.1 0.87 -1.4
1,078,351 + Xcc-8004.1129.1 0.87 -0.2
1,078,352 - Xcc-8004.1129.1 0.87 -1.4
1,078,476 + -0.4
1,078,479 + -0.5
1,078,479 + -0.6
1,078,479 + -0.4
1,078,480 - -0.8
1,078,480 - +0.3
1,078,480 - -1.2
1,078,480 - +0.6
1,078,487 - -2.2
1,078,509 + +1.1
1,078,510 - +1.5
1,078,536 + +0.9
1,078,537 - -0.3
1,078,539 + +0.6
1,078,539 + -1.1
1,078,614 + Xcc-8004.1130.1 0.11 -2.0
1,078,615 - Xcc-8004.1130.1 0.11 -0.2
1,078,615 - Xcc-8004.1130.1 0.11 -0.5
1,078,615 - Xcc-8004.1130.1 0.11 +0.1
1,078,615 - Xcc-8004.1130.1 0.11 +0.8
1,078,615 - Xcc-8004.1130.1 0.11 -3.0
1,078,636 - Xcc-8004.1130.1 0.13 -0.9
1,078,638 - Xcc-8004.1130.1 0.13 +0.2
1,078,735 - Xcc-8004.1130.1 0.19 -1.1
1,078,735 - Xcc-8004.1130.1 0.19 -1.5
1,078,735 - Xcc-8004.1130.1 0.19 -0.9
1,078,794 + Xcc-8004.1130.1 0.23 +0.5
1,078,795 - Xcc-8004.1130.1 0.23 +0.4
1,078,795 - Xcc-8004.1130.1 0.23 -2.0
1,078,795 - Xcc-8004.1130.1 0.23 +0.6
1,078,797 + Xcc-8004.1130.1 0.23 -1.5
1,078,797 + Xcc-8004.1130.1 0.23 +0.4
1,078,797 + Xcc-8004.1130.1 0.23 -1.5
1,078,798 - Xcc-8004.1130.1 0.23 +0.2
1,078,798 - Xcc-8004.1130.1 0.23 -0.4
1,078,798 - Xcc-8004.1130.1 0.23 +0.0
1,078,798 - Xcc-8004.1130.1 0.23 +0.5
1,078,798 - Xcc-8004.1130.1 0.23 +0.7
1,078,798 - Xcc-8004.1130.1 0.23 +0.9
1,078,798 - Xcc-8004.1130.1 0.23 +1.2
1,078,803 + Xcc-8004.1130.1 0.24 -0.9
1,078,803 + Xcc-8004.1130.1 0.24 +0.2
1,078,803 + Xcc-8004.1130.1 0.24 -1.1
1,078,804 - Xcc-8004.1130.1 0.24 +1.1
1,079,040 + Xcc-8004.1130.1 0.40 +0.7
1,079,041 - Xcc-8004.1130.1 0.40 -0.4
1,079,041 - Xcc-8004.1130.1 0.40 -3.4
1,079,041 - Xcc-8004.1130.1 0.40 -0.9
1,079,235 + Xcc-8004.1130.1 0.53 -0.9
1,079,235 + Xcc-8004.1130.1 0.53 -1.3
1,079,298 + Xcc-8004.1130.1 0.57 -0.1
1,079,298 + Xcc-8004.1130.1 0.57 +1.0
1,079,299 - Xcc-8004.1130.1 0.57 -0.4
1,079,299 - Xcc-8004.1130.1 0.57 -0.7
1,079,299 - Xcc-8004.1130.1 0.57 -0.1
1,079,299 - Xcc-8004.1130.1 0.57 -2.6
1,079,312 + Xcc-8004.1130.1 0.58 +1.9
1,079,312 + Xcc-8004.1130.1 0.58 +2.5
1,079,313 - Xcc-8004.1130.1 0.58 -0.4
1,079,316 + Xcc-8004.1130.1 0.58 +1.1
1,079,316 + Xcc-8004.1130.1 0.58 +2.0
1,079,316 + Xcc-8004.1130.1 0.58 +1.8
1,079,317 - Xcc-8004.1130.1 0.58 -1.7
1,079,496 + Xcc-8004.1130.1 0.70 -0.2
1,079,496 + Xcc-8004.1130.1 0.70 -1.7
1,079,497 - Xcc-8004.1130.1 0.70 +1.3
1,079,497 - Xcc-8004.1130.1 0.70 +1.1
1,079,497 - Xcc-8004.1130.1 0.70 -2.6
1,079,575 - Xcc-8004.1130.1 0.76 +0.2
1,079,643 + Xcc-8004.1130.1 0.80 +1.6
1,079,649 + Xcc-8004.1130.1 0.81 -1.5
1,079,649 + Xcc-8004.1130.1 0.81 -0.5
1,079,656 - Xcc-8004.1130.1 0.81 -2.0
1,079,656 - Xcc-8004.1130.1 0.81 +0.9
1,079,746 - Xcc-8004.1130.1 0.87 +3.6
1,079,829 + +2.5
1,079,830 - -0.4
1,079,934 + +0.4
1,079,935 - -0.4
1,079,935 - -0.1
1,079,975 + -0.1
1,080,037 + +0.6
1,080,038 - -0.6
1,080,271 + -0.8
1,080,271 + +1.0
1,080,271 + -1.1
1,080,272 - +0.6
1,080,282 - +1.5
1,080,309 + +2.0
1,080,357 + -1.7
1,080,357 + -2.2
1,080,357 + -1.2
1,080,358 - -0.9
1,080,358 - -0.2
1,080,392 - -0.6
1,080,399 + +3.0
1,080,403 + +0.5
1,080,403 + -1.0
1,080,403 + -0.7
1,080,545 + +0.3
1,080,546 - +1.4
1,080,546 - +0.4
1,080,549 + +1.0
1,080,549 + +1.4
1,080,550 - +2.6
1,080,569 - -2.8
1,080,684 - +4.1
1,080,715 - +2.9
1,080,721 + -0.9
1,080,772 - -1.2

Or see this region's nucleotide sequence