Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1101.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1099.1 and Xcc-8004.1100.1 are separated by 35 nucleotidesXcc-8004.1100.1 and Xcc-8004.1101.1 overlap by 31 nucleotidesXcc-8004.1101.1 and Xcc-8004.1102.1 are separated by 25 nucleotidesXcc-8004.1102.1 and Xcc-8004.1103.1 are separated by 7 nucleotides Xcc-8004.1099.1: Xcc-8004.1099.1 - Inner membrane protein of type IV secretion of T-DNA complex, VirB6, at 1,046,446 to 1,047,567 Xcc-8004.1099.1 Xcc-8004.1100.1: Xcc-8004.1100.1 - Type IV fimbrial biogenesis protein PilY1, at 1,047,603 to 1,047,707 Xcc-8004.1100.1 Xcc-8004.1101.1: Xcc-8004.1101.1 - Mobile element protein, at 1,047,677 to 1,049,101 Xcc-8004.1101.1 Xcc-8004.1102.1: Xcc-8004.1102.1 - Minor pilin of type IV secretion complex, VirB5, at 1,049,127 to 1,049,612 Xcc-8004.1102.1 Xcc-8004.1103.1: Xcc-8004.1103.1 - hypothetical protein, at 1,049,620 to 1,049,889 Xcc-8004.1103.1 Position (kb) 1047 1048 1049 1050Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1046.677 kb on - strand, within Xcc-8004.1099.1at 1046.689 kb on + strand, within Xcc-8004.1099.1at 1046.689 kb on + strand, within Xcc-8004.1099.1at 1046.690 kb on - strand, within Xcc-8004.1099.1at 1046.690 kb on - strand, within Xcc-8004.1099.1at 1046.690 kb on - strand, within Xcc-8004.1099.1at 1046.904 kb on - strand, within Xcc-8004.1099.1at 1046.904 kb on - strand, within Xcc-8004.1099.1at 1046.904 kb on - strand, within Xcc-8004.1099.1at 1047.109 kb on + strand, within Xcc-8004.1099.1at 1047.110 kb on - strand, within Xcc-8004.1099.1at 1047.150 kb on - strand, within Xcc-8004.1099.1at 1047.363 kb on - strand, within Xcc-8004.1099.1at 1047.363 kb on - strand, within Xcc-8004.1099.1at 1047.473 kb on + strandat 1049.123 kb on + strandat 1049.246 kb on + strand, within Xcc-8004.1102.1at 1049.246 kb on + strand, within Xcc-8004.1102.1at 1049.247 kb on - strand, within Xcc-8004.1102.1at 1049.248 kb on + strand, within Xcc-8004.1102.1at 1049.248 kb on + strand, within Xcc-8004.1102.1at 1049.248 kb on + strand, within Xcc-8004.1102.1at 1049.248 kb on + strand, within Xcc-8004.1102.1at 1049.248 kb on + strand, within Xcc-8004.1102.1at 1049.249 kb on - strand, within Xcc-8004.1102.1at 1049.249 kb on - strand, within Xcc-8004.1102.1at 1049.257 kb on + strand, within Xcc-8004.1102.1at 1049.258 kb on - strand, within Xcc-8004.1102.1at 1049.258 kb on - strand, within Xcc-8004.1102.1at 1049.258 kb on - strand, within Xcc-8004.1102.1at 1049.300 kb on + strand, within Xcc-8004.1102.1at 1049.301 kb on - strand, within Xcc-8004.1102.1at 1049.301 kb on - strand, within Xcc-8004.1102.1at 1049.301 kb on - strand, within Xcc-8004.1102.1at 1049.301 kb on - strand, within Xcc-8004.1102.1at 1049.301 kb on - strand, within Xcc-8004.1102.1at 1049.320 kb on - strand, within Xcc-8004.1102.1at 1049.320 kb on - strand, within Xcc-8004.1102.1at 1049.354 kb on + strand, within Xcc-8004.1102.1at 1049.355 kb on - strand, within Xcc-8004.1102.1at 1049.355 kb on - strand, within Xcc-8004.1102.1at 1049.355 kb on - strand, within Xcc-8004.1102.1at 1049.357 kb on + strand, within Xcc-8004.1102.1at 1049.358 kb on - strand, within Xcc-8004.1102.1at 1049.366 kb on + strand, within Xcc-8004.1102.1at 1049.402 kb on + strand, within Xcc-8004.1102.1at 1049.402 kb on + strand, within Xcc-8004.1102.1at 1049.403 kb on - strand, within Xcc-8004.1102.1at 1049.403 kb on - strand, within Xcc-8004.1102.1at 1049.403 kb on - strand, within Xcc-8004.1102.1at 1049.444 kb on - strand, within Xcc-8004.1102.1at 1049.501 kb on + strand, within Xcc-8004.1102.1at 1049.502 kb on - strand, within Xcc-8004.1102.1at 1049.583 kb on - strandat 1049.583 kb on - strandat 1049.583 kb on - strandat 1049.596 kb on + strandat 1049.597 kb on - strandat 1049.621 kb on + strandat 1049.681 kb on + strand, within Xcc-8004.1103.1at 1049.681 kb on + strand, within Xcc-8004.1103.1at 1049.681 kb on + strand, within Xcc-8004.1103.1at 1049.681 kb on + strand, within Xcc-8004.1103.1at 1049.681 kb on + strand, within Xcc-8004.1103.1at 1049.681 kb on + strand, within Xcc-8004.1103.1at 1049.681 kb on + strand, within Xcc-8004.1103.1at 1049.682 kb on - strand, within Xcc-8004.1103.1at 1049.682 kb on - strand, within Xcc-8004.1103.1at 1049.682 kb on - strand, within Xcc-8004.1103.1at 1049.682 kb on - strand, within Xcc-8004.1103.1at 1049.682 kb on - strand, within Xcc-8004.1103.1at 1049.702 kb on + strand, within Xcc-8004.1103.1at 1049.702 kb on + strand, within Xcc-8004.1103.1at 1049.703 kb on - strand, within Xcc-8004.1103.1at 1049.745 kb on - strand, within Xcc-8004.1103.1at 1049.745 kb on - strand, within Xcc-8004.1103.1at 1049.754 kb on + strand, within Xcc-8004.1103.1at 1049.828 kb on - strand, within Xcc-8004.1103.1at 1049.828 kb on - strand, within Xcc-8004.1103.1at 1049.881 kb on + strandat 1049.916 kb on - strandat 1049.993 kb on + strandat 1049.995 kb on + strandat 1049.996 kb on - strandat 1049.996 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes)
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1,046,677 - Xcc-8004.1099.1 0.21 +1.1
1,046,689 + Xcc-8004.1099.1 0.22 -1.7
1,046,689 + Xcc-8004.1099.1 0.22 +0.1
1,046,690 - Xcc-8004.1099.1 0.22 -0.1
1,046,690 - Xcc-8004.1099.1 0.22 +0.7
1,046,690 - Xcc-8004.1099.1 0.22 +0.1
1,046,904 - Xcc-8004.1099.1 0.41 -1.2
1,046,904 - Xcc-8004.1099.1 0.41 -0.9
1,046,904 - Xcc-8004.1099.1 0.41 +1.3
1,047,109 + Xcc-8004.1099.1 0.59 -0.6
1,047,110 - Xcc-8004.1099.1 0.59 -0.9
1,047,150 - Xcc-8004.1099.1 0.63 +2.8
1,047,363 - Xcc-8004.1099.1 0.82 +1.9
1,047,363 - Xcc-8004.1099.1 0.82 -0.0
1,047,473 + -2.5
1,049,123 + -1.8
1,049,246 + Xcc-8004.1102.1 0.24 -0.4
1,049,246 + Xcc-8004.1102.1 0.24 -1.8
1,049,247 - Xcc-8004.1102.1 0.25 -0.9
1,049,248 + Xcc-8004.1102.1 0.25 -0.4
1,049,248 + Xcc-8004.1102.1 0.25 -3.0
1,049,248 + Xcc-8004.1102.1 0.25 +0.2
1,049,248 + Xcc-8004.1102.1 0.25 +0.1
1,049,248 + Xcc-8004.1102.1 0.25 -0.7
1,049,249 - Xcc-8004.1102.1 0.25 -0.2
1,049,249 - Xcc-8004.1102.1 0.25 +0.4
1,049,257 + Xcc-8004.1102.1 0.27 -0.4
1,049,258 - Xcc-8004.1102.1 0.27 -0.6
1,049,258 - Xcc-8004.1102.1 0.27 +0.2
1,049,258 - Xcc-8004.1102.1 0.27 -0.2
1,049,300 + Xcc-8004.1102.1 0.36 +1.8
1,049,301 - Xcc-8004.1102.1 0.36 -0.9
1,049,301 - Xcc-8004.1102.1 0.36 +1.3
1,049,301 - Xcc-8004.1102.1 0.36 -1.3
1,049,301 - Xcc-8004.1102.1 0.36 +0.6
1,049,301 - Xcc-8004.1102.1 0.36 -0.1
1,049,320 - Xcc-8004.1102.1 0.40 -1.1
1,049,320 - Xcc-8004.1102.1 0.40 -0.5
1,049,354 + Xcc-8004.1102.1 0.47 +1.0
1,049,355 - Xcc-8004.1102.1 0.47 -0.9
1,049,355 - Xcc-8004.1102.1 0.47 +0.1
1,049,355 - Xcc-8004.1102.1 0.47 -0.8
1,049,357 + Xcc-8004.1102.1 0.47 -0.2
1,049,358 - Xcc-8004.1102.1 0.48 +0.1
1,049,366 + Xcc-8004.1102.1 0.49 +0.6
1,049,402 + Xcc-8004.1102.1 0.57 +0.2
1,049,402 + Xcc-8004.1102.1 0.57 -1.7
1,049,403 - Xcc-8004.1102.1 0.57 -2.1
1,049,403 - Xcc-8004.1102.1 0.57 -3.1
1,049,403 - Xcc-8004.1102.1 0.57 -3.1
1,049,444 - Xcc-8004.1102.1 0.65 -1.1
1,049,501 + Xcc-8004.1102.1 0.77 -2.3
1,049,502 - Xcc-8004.1102.1 0.77 -0.9
1,049,583 - -0.2
1,049,583 - -0.2
1,049,583 - -1.1
1,049,596 + -0.5
1,049,597 - +2.2
1,049,621 + +0.6
1,049,681 + Xcc-8004.1103.1 0.23 -0.8
1,049,681 + Xcc-8004.1103.1 0.23 +1.4
1,049,681 + Xcc-8004.1103.1 0.23 +0.4
1,049,681 + Xcc-8004.1103.1 0.23 -0.5
1,049,681 + Xcc-8004.1103.1 0.23 -0.0
1,049,681 + Xcc-8004.1103.1 0.23 +0.5
1,049,681 + Xcc-8004.1103.1 0.23 -1.8
1,049,682 - Xcc-8004.1103.1 0.23 +0.5
1,049,682 - Xcc-8004.1103.1 0.23 -0.6
1,049,682 - Xcc-8004.1103.1 0.23 -0.5
1,049,682 - Xcc-8004.1103.1 0.23 +0.1
1,049,682 - Xcc-8004.1103.1 0.23 -0.0
1,049,702 + Xcc-8004.1103.1 0.30 -2.4
1,049,702 + Xcc-8004.1103.1 0.30 -0.7
1,049,703 - Xcc-8004.1103.1 0.31 -1.8
1,049,745 - Xcc-8004.1103.1 0.46 -3.1
1,049,745 - Xcc-8004.1103.1 0.46 -3.6
1,049,754 + Xcc-8004.1103.1 0.50 -0.5
1,049,828 - Xcc-8004.1103.1 0.77 +1.4
1,049,828 - Xcc-8004.1103.1 0.77 -1.5
1,049,881 + -2.5
1,049,916 - -1.8
1,049,993 + -3.5
1,049,995 + +0.1
1,049,996 - +0.2
1,049,996 - +0.4

Or see this region's nucleotide sequence