Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1082.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1080.1 and Xcc-8004.1082.1 overlap by 4 nucleotidesXcc-8004.1082.1 and Xcc-8004.1083.1 are separated by 8 nucleotidesXcc-8004.1083.1 and Xcc-8004.1084.1 are separated by 32 nucleotides Xcc-8004.1080.1: Xcc-8004.1080.1 - FIG01211990: hypothetical protein, at 1,036,359 to 1,037,735 Xcc-8004.1080.1 Xcc-8004.1082.1: Xcc-8004.1082.1 - FIG01211203: hypothetical protein, at 1,037,732 to 1,037,971 Xcc-8004.1082.1 Xcc-8004.1083.1: Xcc-8004.1083.1 - Mobile element protein, at 1,037,980 to 1,038,813 Xcc-8004.1083.1 Xcc-8004.1084.1: Xcc-8004.1084.1 - Mobile element protein, at 1,038,846 to 1,039,112 Xcc-8004.1084.1 Position (kb) 1037 1038Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1036.738 kb on - strand, within Xcc-8004.1080.1at 1036.766 kb on - strand, within Xcc-8004.1080.1at 1036.766 kb on - strand, within Xcc-8004.1080.1at 1036.766 kb on - strand, within Xcc-8004.1080.1at 1036.788 kb on + strand, within Xcc-8004.1080.1at 1036.800 kb on + strand, within Xcc-8004.1080.1at 1036.801 kb on - strand, within Xcc-8004.1080.1at 1036.852 kb on - strand, within Xcc-8004.1080.1at 1036.852 kb on - strand, within Xcc-8004.1080.1at 1036.905 kb on + strand, within Xcc-8004.1080.1at 1036.906 kb on - strand, within Xcc-8004.1080.1at 1036.952 kb on - strand, within Xcc-8004.1080.1at 1037.094 kb on - strand, within Xcc-8004.1080.1at 1037.099 kb on + strand, within Xcc-8004.1080.1at 1037.099 kb on + strand, within Xcc-8004.1080.1at 1037.100 kb on - strand, within Xcc-8004.1080.1at 1037.100 kb on - strand, within Xcc-8004.1080.1at 1037.103 kb on + strand, within Xcc-8004.1080.1at 1037.104 kb on - strand, within Xcc-8004.1080.1at 1037.151 kb on - strand, within Xcc-8004.1080.1at 1037.151 kb on - strand, within Xcc-8004.1080.1at 1037.265 kb on - strand, within Xcc-8004.1080.1at 1037.497 kb on + strand, within Xcc-8004.1080.1at 1037.498 kb on - strand, within Xcc-8004.1080.1at 1037.582 kb on + strand, within Xcc-8004.1080.1at 1037.583 kb on - strand, within Xcc-8004.1080.1at 1037.614 kb on + strandat 1037.614 kb on + strandat 1037.630 kb on - strandat 1037.633 kb on + strandat 1037.634 kb on - strandat 1037.689 kb on + strandat 1037.757 kb on - strand, within Xcc-8004.1082.1at 1037.767 kb on + strand, within Xcc-8004.1082.1at 1037.768 kb on - strand, within Xcc-8004.1082.1at 1037.988 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes)
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1,036,738 - Xcc-8004.1080.1 0.28 -1.2
1,036,766 - Xcc-8004.1080.1 0.30 +1.7
1,036,766 - Xcc-8004.1080.1 0.30 +0.4
1,036,766 - Xcc-8004.1080.1 0.30 +1.3
1,036,788 + Xcc-8004.1080.1 0.31 +0.3
1,036,800 + Xcc-8004.1080.1 0.32 +1.7
1,036,801 - Xcc-8004.1080.1 0.32 -1.3
1,036,852 - Xcc-8004.1080.1 0.36 +0.1
1,036,852 - Xcc-8004.1080.1 0.36 -1.3
1,036,905 + Xcc-8004.1080.1 0.40 +1.4
1,036,906 - Xcc-8004.1080.1 0.40 +0.5
1,036,952 - Xcc-8004.1080.1 0.43 -0.1
1,037,094 - Xcc-8004.1080.1 0.53 +1.5
1,037,099 + Xcc-8004.1080.1 0.54 +1.2
1,037,099 + Xcc-8004.1080.1 0.54 -0.7
1,037,100 - Xcc-8004.1080.1 0.54 +1.5
1,037,100 - Xcc-8004.1080.1 0.54 +0.7
1,037,103 + Xcc-8004.1080.1 0.54 +2.4
1,037,104 - Xcc-8004.1080.1 0.54 +0.1
1,037,151 - Xcc-8004.1080.1 0.58 -0.8
1,037,151 - Xcc-8004.1080.1 0.58 +1.1
1,037,265 - Xcc-8004.1080.1 0.66 -2.9
1,037,497 + Xcc-8004.1080.1 0.83 -2.7
1,037,498 - Xcc-8004.1080.1 0.83 -1.3
1,037,582 + Xcc-8004.1080.1 0.89 +0.3
1,037,583 - Xcc-8004.1080.1 0.89 +1.4
1,037,614 + +1.7
1,037,614 + -1.8
1,037,630 - -0.3
1,037,633 + +2.1
1,037,634 - +0.4
1,037,689 + +0.3
1,037,757 - Xcc-8004.1082.1 0.10 -2.5
1,037,767 + Xcc-8004.1082.1 0.15 -3.0
1,037,768 - Xcc-8004.1082.1 0.15 -2.0
1,037,988 - +0.8

Or see this region's nucleotide sequence