Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1062.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1061.1 and Xcc-8004.1062.1 are separated by 78 nucleotidesXcc-8004.1062.1 and Xcc-8004.1063.1 are separated by 12 nucleotides Xcc-8004.1061.1: Xcc-8004.1061.1 - Gamma-glutamyltranspeptidase (EC 2.3.2.2), at 1,013,642 to 1,015,351 Xcc-8004.1061.1 Xcc-8004.1062.1: Xcc-8004.1062.1 - chemotaxis protein, at 1,015,430 to 1,017,268 Xcc-8004.1062.1 Xcc-8004.1063.1: Xcc-8004.1063.1 - hypothetical protein, at 1,017,281 to 1,019,260 Xcc-8004.1063.1 Position (kb) 1015 1016 1017 1018Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1014.453 kb on - strand, within Xcc-8004.1061.1at 1014.453 kb on - strand, within Xcc-8004.1061.1at 1014.461 kb on + strand, within Xcc-8004.1061.1at 1014.461 kb on + strand, within Xcc-8004.1061.1at 1014.462 kb on - strand, within Xcc-8004.1061.1at 1014.520 kb on + strand, within Xcc-8004.1061.1at 1014.626 kb on + strand, within Xcc-8004.1061.1at 1014.626 kb on + strand, within Xcc-8004.1061.1at 1014.627 kb on - strand, within Xcc-8004.1061.1at 1014.627 kb on - strand, within Xcc-8004.1061.1at 1014.627 kb on - strand, within Xcc-8004.1061.1at 1014.680 kb on + strand, within Xcc-8004.1061.1at 1014.681 kb on - strand, within Xcc-8004.1061.1at 1014.681 kb on - strand, within Xcc-8004.1061.1at 1014.776 kb on + strand, within Xcc-8004.1061.1at 1014.776 kb on + strand, within Xcc-8004.1061.1at 1014.776 kb on + strand, within Xcc-8004.1061.1at 1014.776 kb on + strand, within Xcc-8004.1061.1at 1014.776 kb on + strand, within Xcc-8004.1061.1at 1014.776 kb on + strand, within Xcc-8004.1061.1at 1014.776 kb on + strand, within Xcc-8004.1061.1at 1014.777 kb on - strand, within Xcc-8004.1061.1at 1014.777 kb on - strand, within Xcc-8004.1061.1at 1014.777 kb on - strand, within Xcc-8004.1061.1at 1014.777 kb on - strand, within Xcc-8004.1061.1at 1014.777 kb on - strand, within Xcc-8004.1061.1at 1014.830 kb on + strand, within Xcc-8004.1061.1at 1014.831 kb on - strand, within Xcc-8004.1061.1at 1014.831 kb on - strand, within Xcc-8004.1061.1at 1014.831 kb on - strand, within Xcc-8004.1061.1at 1014.929 kb on + strand, within Xcc-8004.1061.1at 1014.929 kb on + strand, within Xcc-8004.1061.1at 1014.930 kb on - strand, within Xcc-8004.1061.1at 1015.075 kb on + strand, within Xcc-8004.1061.1at 1015.075 kb on + strand, within Xcc-8004.1061.1at 1015.076 kb on - strand, within Xcc-8004.1061.1at 1015.196 kb on + strandat 1015.256 kb on + strandat 1015.257 kb on - strandat 1015.265 kb on + strandat 1015.301 kb on + strandat 1015.304 kb on + strandat 1015.305 kb on - strandat 1015.305 kb on - strandat 1015.305 kb on - strandat 1015.692 kb on - strand, within Xcc-8004.1062.1at 1015.771 kb on - strand, within Xcc-8004.1062.1at 1015.771 kb on - strand, within Xcc-8004.1062.1at 1015.954 kb on - strand, within Xcc-8004.1062.1at 1016.010 kb on + strand, within Xcc-8004.1062.1at 1016.011 kb on - strand, within Xcc-8004.1062.1at 1016.314 kb on + strand, within Xcc-8004.1062.1at 1016.315 kb on - strand, within Xcc-8004.1062.1at 1016.634 kb on + strand, within Xcc-8004.1062.1at 1016.634 kb on + strand, within Xcc-8004.1062.1at 1016.872 kb on + strand, within Xcc-8004.1062.1at 1016.873 kb on - strand, within Xcc-8004.1062.1at 1016.873 kb on - strand, within Xcc-8004.1062.1at 1016.876 kb on + strand, within Xcc-8004.1062.1at 1016.876 kb on + strand, within Xcc-8004.1062.1at 1016.876 kb on + strand, within Xcc-8004.1062.1at 1016.876 kb on + strand, within Xcc-8004.1062.1at 1017.020 kb on + strand, within Xcc-8004.1062.1at 1017.021 kb on - strand, within Xcc-8004.1062.1at 1017.021 kb on - strand, within Xcc-8004.1062.1at 1017.021 kb on - strand, within Xcc-8004.1062.1at 1017.168 kb on - strandat 1017.168 kb on - strandat 1017.255 kb on - strandat 1017.266 kb on + strandat 1017.397 kb on - strandat 1017.516 kb on - strand, within Xcc-8004.1063.1at 1017.610 kb on - strand, within Xcc-8004.1063.1at 1017.621 kb on + strand, within Xcc-8004.1063.1at 1017.651 kb on + strand, within Xcc-8004.1063.1at 1017.651 kb on + strand, within Xcc-8004.1063.1at 1017.651 kb on + strand, within Xcc-8004.1063.1at 1017.651 kb on + strand, within Xcc-8004.1063.1at 1017.651 kb on + strand, within Xcc-8004.1063.1at 1017.651 kb on + strand, within Xcc-8004.1063.1at 1017.651 kb on + strand, within Xcc-8004.1063.1at 1017.669 kb on + strand, within Xcc-8004.1063.1at 1017.738 kb on + strand, within Xcc-8004.1063.1at 1017.738 kb on + strand, within Xcc-8004.1063.1at 1017.738 kb on + strand, within Xcc-8004.1063.1at 1017.739 kb on - strand, within Xcc-8004.1063.1at 1017.739 kb on - strand, within Xcc-8004.1063.1at 1017.760 kb on - strand, within Xcc-8004.1063.1at 1017.760 kb on - strand, within Xcc-8004.1063.1at 1017.760 kb on - strand, within Xcc-8004.1063.1at 1017.760 kb on - strand, within Xcc-8004.1063.1at 1017.900 kb on + strand, within Xcc-8004.1063.1at 1017.901 kb on - strand, within Xcc-8004.1063.1at 1018.160 kb on - strand, within Xcc-8004.1063.1at 1018.182 kb on + strand, within Xcc-8004.1063.1at 1018.182 kb on + strand, within Xcc-8004.1063.1at 1018.182 kb on + strand, within Xcc-8004.1063.1at 1018.182 kb on + strand, within Xcc-8004.1063.1at 1018.183 kb on - strand, within Xcc-8004.1063.1at 1018.183 kb on - strand, within Xcc-8004.1063.1at 1018.209 kb on + strand, within Xcc-8004.1063.1at 1018.209 kb on + strand, within Xcc-8004.1063.1at 1018.209 kb on + strand, within Xcc-8004.1063.1at 1018.209 kb on + strand, within Xcc-8004.1063.1at 1018.209 kb on + strand, within Xcc-8004.1063.1at 1018.210 kb on - strand, within Xcc-8004.1063.1at 1018.263 kb on + strand, within Xcc-8004.1063.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes)
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1,014,453 - Xcc-8004.1061.1 0.47 -2.8
1,014,453 - Xcc-8004.1061.1 0.47 +0.3
1,014,461 + Xcc-8004.1061.1 0.48 +0.0
1,014,461 + Xcc-8004.1061.1 0.48 -2.0
1,014,462 - Xcc-8004.1061.1 0.48 +4.6
1,014,520 + Xcc-8004.1061.1 0.51 +2.0
1,014,626 + Xcc-8004.1061.1 0.58 +0.5
1,014,626 + Xcc-8004.1061.1 0.58 +2.3
1,014,627 - Xcc-8004.1061.1 0.58 +0.7
1,014,627 - Xcc-8004.1061.1 0.58 -2.2
1,014,627 - Xcc-8004.1061.1 0.58 +1.3
1,014,680 + Xcc-8004.1061.1 0.61 +0.0
1,014,681 - Xcc-8004.1061.1 0.61 -1.3
1,014,681 - Xcc-8004.1061.1 0.61 -0.7
1,014,776 + Xcc-8004.1061.1 0.66 +0.7
1,014,776 + Xcc-8004.1061.1 0.66 +1.4
1,014,776 + Xcc-8004.1061.1 0.66 -2.1
1,014,776 + Xcc-8004.1061.1 0.66 +0.5
1,014,776 + Xcc-8004.1061.1 0.66 +1.4
1,014,776 + Xcc-8004.1061.1 0.66 -0.7
1,014,776 + Xcc-8004.1061.1 0.66 +0.1
1,014,777 - Xcc-8004.1061.1 0.66 -0.8
1,014,777 - Xcc-8004.1061.1 0.66 +0.3
1,014,777 - Xcc-8004.1061.1 0.66 +1.7
1,014,777 - Xcc-8004.1061.1 0.66 -1.4
1,014,777 - Xcc-8004.1061.1 0.66 +1.9
1,014,830 + Xcc-8004.1061.1 0.69 -0.9
1,014,831 - Xcc-8004.1061.1 0.70 -0.7
1,014,831 - Xcc-8004.1061.1 0.70 -3.5
1,014,831 - Xcc-8004.1061.1 0.70 +0.8
1,014,929 + Xcc-8004.1061.1 0.75 -0.4
1,014,929 + Xcc-8004.1061.1 0.75 +1.8
1,014,930 - Xcc-8004.1061.1 0.75 +3.3
1,015,075 + Xcc-8004.1061.1 0.84 +0.7
1,015,075 + Xcc-8004.1061.1 0.84 -1.6
1,015,076 - Xcc-8004.1061.1 0.84 +0.4
1,015,196 + +1.1
1,015,256 + -0.7
1,015,257 - +1.9
1,015,265 + -0.6
1,015,301 + +0.7
1,015,304 + -0.5
1,015,305 - +0.3
1,015,305 - +0.1
1,015,305 - -0.9
1,015,692 - Xcc-8004.1062.1 0.14 +1.3
1,015,771 - Xcc-8004.1062.1 0.19 +1.0
1,015,771 - Xcc-8004.1062.1 0.19 -2.1
1,015,954 - Xcc-8004.1062.1 0.28 +2.2
1,016,010 + Xcc-8004.1062.1 0.32 +0.6
1,016,011 - Xcc-8004.1062.1 0.32 +1.3
1,016,314 + Xcc-8004.1062.1 0.48 -3.0
1,016,315 - Xcc-8004.1062.1 0.48 +1.3
1,016,634 + Xcc-8004.1062.1 0.65 +0.7
1,016,634 + Xcc-8004.1062.1 0.65 +2.3
1,016,872 + Xcc-8004.1062.1 0.78 -1.9
1,016,873 - Xcc-8004.1062.1 0.78 -2.3
1,016,873 - Xcc-8004.1062.1 0.78 -2.9
1,016,876 + Xcc-8004.1062.1 0.79 -2.9
1,016,876 + Xcc-8004.1062.1 0.79 -2.9
1,016,876 + Xcc-8004.1062.1 0.79 +1.4
1,016,876 + Xcc-8004.1062.1 0.79 +0.9
1,017,020 + Xcc-8004.1062.1 0.86 -1.3
1,017,021 - Xcc-8004.1062.1 0.87 +0.7
1,017,021 - Xcc-8004.1062.1 0.87 +0.5
1,017,021 - Xcc-8004.1062.1 0.87 +2.6
1,017,168 - +0.8
1,017,168 - +0.9
1,017,255 - +0.1
1,017,266 + +1.1
1,017,397 - -0.1
1,017,516 - Xcc-8004.1063.1 0.12 +0.8
1,017,610 - Xcc-8004.1063.1 0.17 -2.1
1,017,621 + Xcc-8004.1063.1 0.17 -0.5
1,017,651 + Xcc-8004.1063.1 0.19 +0.8
1,017,651 + Xcc-8004.1063.1 0.19 +1.2
1,017,651 + Xcc-8004.1063.1 0.19 +1.3
1,017,651 + Xcc-8004.1063.1 0.19 +3.3
1,017,651 + Xcc-8004.1063.1 0.19 -0.9
1,017,651 + Xcc-8004.1063.1 0.19 +0.1
1,017,651 + Xcc-8004.1063.1 0.19 +0.8
1,017,669 + Xcc-8004.1063.1 0.20 -0.3
1,017,738 + Xcc-8004.1063.1 0.23 +0.3
1,017,738 + Xcc-8004.1063.1 0.23 +0.4
1,017,738 + Xcc-8004.1063.1 0.23 +0.1
1,017,739 - Xcc-8004.1063.1 0.23 +0.8
1,017,739 - Xcc-8004.1063.1 0.23 +1.3
1,017,760 - Xcc-8004.1063.1 0.24 -1.9
1,017,760 - Xcc-8004.1063.1 0.24 +1.7
1,017,760 - Xcc-8004.1063.1 0.24 +0.3
1,017,760 - Xcc-8004.1063.1 0.24 +2.2
1,017,900 + Xcc-8004.1063.1 0.31 -0.5
1,017,901 - Xcc-8004.1063.1 0.31 +0.7
1,018,160 - Xcc-8004.1063.1 0.44 +0.5
1,018,182 + Xcc-8004.1063.1 0.46 +0.5
1,018,182 + Xcc-8004.1063.1 0.46 +0.5
1,018,182 + Xcc-8004.1063.1 0.46 -1.3
1,018,182 + Xcc-8004.1063.1 0.46 -2.7
1,018,183 - Xcc-8004.1063.1 0.46 +0.4
1,018,183 - Xcc-8004.1063.1 0.46 +0.1
1,018,209 + Xcc-8004.1063.1 0.47 +0.7
1,018,209 + Xcc-8004.1063.1 0.47 +2.2
1,018,209 + Xcc-8004.1063.1 0.47 -0.5
1,018,209 + Xcc-8004.1063.1 0.47 -1.0
1,018,209 + Xcc-8004.1063.1 0.47 -0.0
1,018,210 - Xcc-8004.1063.1 0.47 +0.1
1,018,263 + Xcc-8004.1063.1 0.50 +1.1

Or see this region's nucleotide sequence