Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.998.1 and Xcc-8004.999.1 are separated by 267 nucleotides Xcc-8004.999.1 and Xcc-8004.1000.1 overlap by 4 nucleotides Xcc-8004.1000.1 and Xcc-8004.1001.1 are separated by 164 nucleotides
Xcc-8004.998.1: Xcc-8004.998.1 - putative; ORF located using Glimmer/Genemark, at 944,660 to 945,202
Xcc-8004.998.1
Xcc-8004.999.1: Xcc-8004.999.1 - putative; ORF located using Glimmer/Genemark, at 945,470 to 945,889
Xcc-8004.999.1
Xcc-8004.1000.1: Xcc-8004.1000.1 - putative; ORF located using Glimmer/Genemark, at 945,886 to 946,452
Xcc-8004.1000.1
Xcc-8004.1001.1: Xcc-8004.1001.1 - FIG01213217: hypothetical protein, at 946,617 to 947,897
Xcc-8004.1001.1
Position (kb) 945
946
947 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 945.069 kb on + strand, within Xcc-8004.998.1 at 945.070 kb on - strand, within Xcc-8004.998.1 at 945.097 kb on - strand, within Xcc-8004.998.1 at 945.483 kb on - strand at 945.483 kb on - strand at 945.483 kb on - strand at 945.521 kb on + strand, within Xcc-8004.999.1 at 945.521 kb on + strand, within Xcc-8004.999.1 at 945.521 kb on + strand, within Xcc-8004.999.1 at 945.535 kb on - strand, within Xcc-8004.999.1 at 945.558 kb on + strand, within Xcc-8004.999.1 at 945.559 kb on - strand, within Xcc-8004.999.1 at 945.559 kb on - strand, within Xcc-8004.999.1 at 945.603 kb on + strand, within Xcc-8004.999.1 at 945.604 kb on - strand, within Xcc-8004.999.1 at 945.604 kb on - strand, within Xcc-8004.999.1 at 945.741 kb on + strand, within Xcc-8004.999.1 at 945.982 kb on + strand, within Xcc-8004.1000.1 at 945.983 kb on - strand, within Xcc-8004.1000.1 at 945.983 kb on - strand, within Xcc-8004.1000.1 at 946.046 kb on + strand, within Xcc-8004.1000.1 at 946.046 kb on + strand, within Xcc-8004.1000.1 at 946.046 kb on + strand, within Xcc-8004.1000.1 at 946.047 kb on - strand, within Xcc-8004.1000.1 at 946.269 kb on + strand, within Xcc-8004.1000.1 at 946.558 kb on + strand at 946.661 kb on - strand at 946.661 kb on - strand at 946.732 kb on + strand at 946.732 kb on + strand at 947.209 kb on + strand, within Xcc-8004.1001.1 at 947.209 kb on + strand, within Xcc-8004.1001.1 at 947.209 kb on + strand, within Xcc-8004.1001.1 at 947.209 kb on + strand, within Xcc-8004.1001.1 at 947.209 kb on + strand, within Xcc-8004.1001.1 at 947.209 kb on + strand, within Xcc-8004.1001.1 at 947.210 kb on - strand, within Xcc-8004.1001.1 at 947.210 kb on - strand, within Xcc-8004.1001.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes) remove 945,069 + Xcc-8004.998.1 0.75 +3.7 945,070 - Xcc-8004.998.1 0.76 +1.0 945,097 - Xcc-8004.998.1 0.80 +1.4 945,483 - +1.4 945,483 - -3.3 945,483 - -0.6 945,521 + Xcc-8004.999.1 0.12 +1.3 945,521 + Xcc-8004.999.1 0.12 -0.7 945,521 + Xcc-8004.999.1 0.12 -0.5 945,535 - Xcc-8004.999.1 0.15 +1.1 945,558 + Xcc-8004.999.1 0.21 -0.9 945,559 - Xcc-8004.999.1 0.21 -1.8 945,559 - Xcc-8004.999.1 0.21 -0.0 945,603 + Xcc-8004.999.1 0.32 -0.2 945,604 - Xcc-8004.999.1 0.32 -0.4 945,604 - Xcc-8004.999.1 0.32 +0.2 945,741 + Xcc-8004.999.1 0.65 +0.3 945,982 + Xcc-8004.1000.1 0.17 -0.3 945,983 - Xcc-8004.1000.1 0.17 -2.4 945,983 - Xcc-8004.1000.1 0.17 +5.9 946,046 + Xcc-8004.1000.1 0.28 -2.5 946,046 + Xcc-8004.1000.1 0.28 -2.5 946,046 + Xcc-8004.1000.1 0.28 -0.5 946,047 - Xcc-8004.1000.1 0.28 -1.1 946,269 + Xcc-8004.1000.1 0.68 -1.9 946,558 + +0.1 946,661 - -1.4 946,661 - -0.7 946,732 + -2.6 946,732 + -1.1 947,209 + Xcc-8004.1001.1 0.46 +1.9 947,209 + Xcc-8004.1001.1 0.46 -1.0 947,209 + Xcc-8004.1001.1 0.46 -1.1 947,209 + Xcc-8004.1001.1 0.46 +2.9 947,209 + Xcc-8004.1001.1 0.46 +1.4 947,209 + Xcc-8004.1001.1 0.46 +0.7 947,210 - Xcc-8004.1001.1 0.46 -2.1 947,210 - Xcc-8004.1001.1 0.46 -1.7
Or see this region's nucleotide sequence