Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.956.1 and Xcc-8004.957.1 overlap by 4 nucleotides Xcc-8004.957.1 and Xcc-8004.958.1 are separated by 314 nucleotides
Xcc-8004.956.1: Xcc-8004.956.1 - Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6), at 899,521 to 900,549
Xcc-8004.956.1
Xcc-8004.957.1: Xcc-8004.957.1 - N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25), at 900,546 to 901,706
Xcc-8004.957.1
Xcc-8004.958.1: Xcc-8004.958.1 - Nisin-resistance protein, at 902,021 to 903,391
Xcc-8004.958.1
Position (kb) 900
901
902 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 899.705 kb on - strand, within Xcc-8004.956.1 at 899.705 kb on - strand, within Xcc-8004.956.1 at 899.713 kb on + strand, within Xcc-8004.956.1 at 899.714 kb on - strand, within Xcc-8004.956.1 at 899.714 kb on - strand, within Xcc-8004.956.1 at 899.776 kb on + strand, within Xcc-8004.956.1 at 899.776 kb on + strand, within Xcc-8004.956.1 at 899.777 kb on - strand, within Xcc-8004.956.1 at 899.777 kb on - strand, within Xcc-8004.956.1 at 899.777 kb on - strand, within Xcc-8004.956.1 at 899.777 kb on - strand, within Xcc-8004.956.1 at 899.809 kb on + strand, within Xcc-8004.956.1 at 899.809 kb on + strand, within Xcc-8004.956.1 at 899.810 kb on - strand, within Xcc-8004.956.1 at 899.992 kb on + strand, within Xcc-8004.956.1 at 899.992 kb on + strand, within Xcc-8004.956.1 at 899.993 kb on - strand, within Xcc-8004.956.1 at 899.993 kb on - strand, within Xcc-8004.956.1 at 899.993 kb on - strand, within Xcc-8004.956.1 at 899.993 kb on - strand, within Xcc-8004.956.1 at 900.238 kb on + strand, within Xcc-8004.956.1 at 900.238 kb on + strand, within Xcc-8004.956.1 at 900.238 kb on + strand, within Xcc-8004.956.1 at 900.239 kb on - strand, within Xcc-8004.956.1 at 900.239 kb on - strand, within Xcc-8004.956.1 at 900.502 kb on - strand at 900.832 kb on - strand, within Xcc-8004.957.1 at 900.963 kb on + strand, within Xcc-8004.957.1 at 901.162 kb on - strand, within Xcc-8004.957.1 at 901.215 kb on + strand, within Xcc-8004.957.1 at 901.215 kb on + strand, within Xcc-8004.957.1 at 901.215 kb on + strand, within Xcc-8004.957.1 at 901.215 kb on + strand, within Xcc-8004.957.1 at 901.215 kb on + strand, within Xcc-8004.957.1 at 901.216 kb on - strand, within Xcc-8004.957.1 at 901.216 kb on - strand, within Xcc-8004.957.1 at 901.216 kb on - strand, within Xcc-8004.957.1 at 901.462 kb on + strand, within Xcc-8004.957.1 at 901.463 kb on - strand, within Xcc-8004.957.1 at 901.739 kb on + strand at 901.739 kb on + strand at 901.739 kb on + strand at 901.794 kb on + strand at 901.923 kb on - strand at 901.985 kb on + strand at 902.179 kb on - strand, within Xcc-8004.958.1 at 902.410 kb on + strand, within Xcc-8004.958.1 at 902.488 kb on + strand, within Xcc-8004.958.1 at 902.489 kb on - strand, within Xcc-8004.958.1 at 902.584 kb on - strand, within Xcc-8004.958.1 at 902.584 kb on - strand, within Xcc-8004.958.1 at 902.663 kb on + strand, within Xcc-8004.958.1 at 902.663 kb on + strand, within Xcc-8004.958.1 at 902.664 kb on - strand, within Xcc-8004.958.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 899,705 - Xcc-8004.956.1 0.18 +0.0 899,705 - Xcc-8004.956.1 0.18 -2.8 899,713 + Xcc-8004.956.1 0.19 -2.7 899,714 - Xcc-8004.956.1 0.19 +0.0 899,714 - Xcc-8004.956.1 0.19 -1.1 899,776 + Xcc-8004.956.1 0.25 +1.9 899,776 + Xcc-8004.956.1 0.25 +0.2 899,777 - Xcc-8004.956.1 0.25 -0.4 899,777 - Xcc-8004.956.1 0.25 -2.0 899,777 - Xcc-8004.956.1 0.25 -1.9 899,777 - Xcc-8004.956.1 0.25 +1.4 899,809 + Xcc-8004.956.1 0.28 -2.0 899,809 + Xcc-8004.956.1 0.28 -1.5 899,810 - Xcc-8004.956.1 0.28 -0.5 899,992 + Xcc-8004.956.1 0.46 +2.4 899,992 + Xcc-8004.956.1 0.46 -2.0 899,993 - Xcc-8004.956.1 0.46 -2.7 899,993 - Xcc-8004.956.1 0.46 -4.2 899,993 - Xcc-8004.956.1 0.46 -2.5 899,993 - Xcc-8004.956.1 0.46 -2.2 900,238 + Xcc-8004.956.1 0.70 -0.7 900,238 + Xcc-8004.956.1 0.70 -0.2 900,238 + Xcc-8004.956.1 0.70 +1.3 900,239 - Xcc-8004.956.1 0.70 +0.4 900,239 - Xcc-8004.956.1 0.70 -2.3 900,502 - -1.0 900,832 - Xcc-8004.957.1 0.25 -3.5 900,963 + Xcc-8004.957.1 0.36 -0.6 901,162 - Xcc-8004.957.1 0.53 -1.3 901,215 + Xcc-8004.957.1 0.58 -0.6 901,215 + Xcc-8004.957.1 0.58 -0.2 901,215 + Xcc-8004.957.1 0.58 -3.6 901,215 + Xcc-8004.957.1 0.58 -1.3 901,215 + Xcc-8004.957.1 0.58 -1.6 901,216 - Xcc-8004.957.1 0.58 -3.2 901,216 - Xcc-8004.957.1 0.58 -1.9 901,216 - Xcc-8004.957.1 0.58 -3.9 901,462 + Xcc-8004.957.1 0.79 -2.0 901,463 - Xcc-8004.957.1 0.79 -1.7 901,739 + -0.9 901,739 + +1.4 901,739 + +1.4 901,794 + -1.0 901,923 - +0.0 901,985 + +0.4 902,179 - Xcc-8004.958.1 0.12 -1.4 902,410 + Xcc-8004.958.1 0.28 -0.7 902,488 + Xcc-8004.958.1 0.34 +1.0 902,489 - Xcc-8004.958.1 0.34 -1.1 902,584 - Xcc-8004.958.1 0.41 +0.8 902,584 - Xcc-8004.958.1 0.41 -2.9 902,663 + Xcc-8004.958.1 0.47 -1.8 902,663 + Xcc-8004.958.1 0.47 +1.5 902,664 - Xcc-8004.958.1 0.47 -2.3
Or see this region's nucleotide sequence