Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.92.1 and Xcc-8004.93.1 are separated by 397 nucleotides Xcc-8004.93.1 and Xcc-8004.94.1 are separated by 47 nucleotides Xcc-8004.94.1 and Xcc-8004.95.1 are separated by 480 nucleotides
Xcc-8004.92.1: Xcc-8004.92.1 - Dihydrofolate reductase (EC 1.5.1.3), at 84,625 to 85,386
Xcc-8004.92.1
Xcc-8004.93.1: Xcc-8004.93.1 - FIG01211857: hypothetical protein, at 85,784 to 86,059
Xcc-8004.93.1
Xcc-8004.94.1: Xcc-8004.94.1 - Transcriptional regulator, LuxR family, at 86,107 to 86,334
Xcc-8004.94.1
Xcc-8004.95.1: Xcc-8004.95.1 - FIG01212373: hypothetical protein, at 86,815 to 87,768
Xcc-8004.95.1
Position (kb) 85
86
87 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 85.068 kb on + strand, within Xcc-8004.92.1 at 85.246 kb on + strand, within Xcc-8004.92.1 at 85.246 kb on + strand, within Xcc-8004.92.1 at 85.246 kb on + strand, within Xcc-8004.92.1 at 85.246 kb on + strand, within Xcc-8004.92.1 at 85.246 kb on + strand, within Xcc-8004.92.1 at 85.246 kb on + strand, within Xcc-8004.92.1 at 85.246 kb on + strand, within Xcc-8004.92.1 at 85.246 kb on + strand, within Xcc-8004.92.1 at 85.246 kb on + strand, within Xcc-8004.92.1 at 85.246 kb on + strand, within Xcc-8004.92.1 at 85.247 kb on - strand, within Xcc-8004.92.1 at 85.247 kb on - strand, within Xcc-8004.92.1 at 85.247 kb on - strand, within Xcc-8004.92.1 at 85.247 kb on - strand, within Xcc-8004.92.1 at 85.373 kb on - strand at 85.384 kb on + strand at 85.384 kb on + strand at 85.385 kb on - strand at 85.385 kb on - strand at 85.385 kb on - strand at 85.454 kb on + strand at 85.454 kb on + strand at 85.455 kb on - strand at 85.455 kb on - strand at 85.455 kb on - strand at 85.455 kb on - strand at 85.531 kb on + strand at 85.531 kb on + strand at 85.531 kb on + strand at 85.531 kb on + strand at 85.531 kb on + strand at 85.532 kb on - strand at 85.576 kb on + strand at 85.631 kb on - strand at 85.696 kb on + strand at 85.785 kb on + strand at 85.786 kb on - strand at 85.786 kb on - strand at 85.966 kb on + strand, within Xcc-8004.93.1 at 85.966 kb on + strand, within Xcc-8004.93.1 at 85.966 kb on + strand, within Xcc-8004.93.1 at 85.966 kb on + strand, within Xcc-8004.93.1 at 85.986 kb on + strand, within Xcc-8004.93.1 at 86.070 kb on + strand at 86.070 kb on + strand at 86.071 kb on - strand at 86.071 kb on - strand at 86.071 kb on - strand at 86.071 kb on - strand at 86.071 kb on - strand at 86.097 kb on + strand at 86.187 kb on + strand, within Xcc-8004.94.1 at 86.187 kb on + strand, within Xcc-8004.94.1 at 86.453 kb on - strand at 86.453 kb on - strand at 86.453 kb on - strand at 86.499 kb on - strand at 86.590 kb on + strand at 86.590 kb on + strand at 86.590 kb on + strand at 86.590 kb on + strand at 86.591 kb on - strand at 86.614 kb on + strand at 86.614 kb on + strand at 86.615 kb on - strand at 86.684 kb on + strand at 86.685 kb on - strand at 86.685 kb on - strand at 86.744 kb on + strand at 86.744 kb on + strand at 86.744 kb on + strand at 86.744 kb on + strand at 86.744 kb on + strand at 86.744 kb on + strand at 86.744 kb on + strand at 86.745 kb on - strand at 86.745 kb on - strand at 86.745 kb on - strand at 86.745 kb on - strand at 86.745 kb on - strand at 86.751 kb on + strand at 86.752 kb on - strand at 86.752 kb on - strand at 86.929 kb on + strand, within Xcc-8004.95.1 at 86.930 kb on - strand, within Xcc-8004.95.1 at 86.947 kb on + strand, within Xcc-8004.95.1 at 86.947 kb on + strand, within Xcc-8004.95.1 at 86.947 kb on + strand, within Xcc-8004.95.1 at 86.947 kb on + strand, within Xcc-8004.95.1 at 86.947 kb on + strand, within Xcc-8004.95.1 at 86.948 kb on - strand, within Xcc-8004.95.1 at 86.948 kb on - strand, within Xcc-8004.95.1 at 86.948 kb on - strand, within Xcc-8004.95.1 at 86.948 kb on - strand, within Xcc-8004.95.1 at 86.948 kb on - strand, within Xcc-8004.95.1 at 86.948 kb on - strand, within Xcc-8004.95.1 at 86.948 kb on - strand, within Xcc-8004.95.1 at 86.948 kb on - strand, within Xcc-8004.95.1 at 86.948 kb on - strand, within Xcc-8004.95.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 85,068 + Xcc-8004.92.1 0.58 -0.3 85,246 + Xcc-8004.92.1 0.81 +0.4 85,246 + Xcc-8004.92.1 0.81 -0.4 85,246 + Xcc-8004.92.1 0.81 +0.3 85,246 + Xcc-8004.92.1 0.81 +1.4 85,246 + Xcc-8004.92.1 0.81 +0.8 85,246 + Xcc-8004.92.1 0.81 -2.2 85,246 + Xcc-8004.92.1 0.81 -0.7 85,246 + Xcc-8004.92.1 0.81 -0.6 85,246 + Xcc-8004.92.1 0.81 +1.0 85,246 + Xcc-8004.92.1 0.81 +0.4 85,247 - Xcc-8004.92.1 0.82 -2.8 85,247 - Xcc-8004.92.1 0.82 -1.8 85,247 - Xcc-8004.92.1 0.82 -0.6 85,247 - Xcc-8004.92.1 0.82 -0.7 85,373 - +0.0 85,384 + +1.0 85,384 + -1.3 85,385 - +1.7 85,385 - +4.2 85,385 - -0.3 85,454 + -1.3 85,454 + +1.5 85,455 - +1.5 85,455 - +0.0 85,455 - +2.2 85,455 - +1.4 85,531 + +1.8 85,531 + +0.2 85,531 + +1.4 85,531 + -2.7 85,531 + -2.5 85,532 - +1.4 85,576 + -2.4 85,631 - -1.2 85,696 + +1.1 85,785 + +1.8 85,786 - +2.3 85,786 - +1.3 85,966 + Xcc-8004.93.1 0.66 -2.3 85,966 + Xcc-8004.93.1 0.66 -0.4 85,966 + Xcc-8004.93.1 0.66 -1.5 85,966 + Xcc-8004.93.1 0.66 +0.8 85,986 + Xcc-8004.93.1 0.73 -2.6 86,070 + -0.6 86,070 + -1.8 86,071 - +0.2 86,071 - -1.0 86,071 - -1.7 86,071 - -0.2 86,071 - -0.8 86,097 + -2.1 86,187 + Xcc-8004.94.1 0.35 -1.9 86,187 + Xcc-8004.94.1 0.35 -2.0 86,453 - -0.3 86,453 - -0.9 86,453 - -0.0 86,499 - +2.4 86,590 + +0.5 86,590 + -0.7 86,590 + -1.2 86,590 + -1.8 86,591 - -1.0 86,614 + +0.4 86,614 + -0.9 86,615 - -0.8 86,684 + +1.4 86,685 - -2.6 86,685 - -2.7 86,744 + +0.9 86,744 + -0.7 86,744 + -0.7 86,744 + +1.8 86,744 + -1.7 86,744 + -2.8 86,744 + -2.2 86,745 - -0.2 86,745 - +0.0 86,745 - +0.3 86,745 - +1.7 86,745 - +2.4 86,751 + -0.5 86,752 - -0.4 86,752 - -1.1 86,929 + Xcc-8004.95.1 0.12 +1.9 86,930 - Xcc-8004.95.1 0.12 -0.5 86,947 + Xcc-8004.95.1 0.14 -0.5 86,947 + Xcc-8004.95.1 0.14 +0.8 86,947 + Xcc-8004.95.1 0.14 -1.4 86,947 + Xcc-8004.95.1 0.14 -0.6 86,947 + Xcc-8004.95.1 0.14 +1.4 86,948 - Xcc-8004.95.1 0.14 +0.8 86,948 - Xcc-8004.95.1 0.14 -1.1 86,948 - Xcc-8004.95.1 0.14 -2.3 86,948 - Xcc-8004.95.1 0.14 -2.0 86,948 - Xcc-8004.95.1 0.14 +0.4 86,948 - Xcc-8004.95.1 0.14 -1.3 86,948 - Xcc-8004.95.1 0.14 -1.8 86,948 - Xcc-8004.95.1 0.14 -1.4 86,948 - Xcc-8004.95.1 0.14 +1.8
Or see this region's nucleotide sequence