Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.891.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.889.1 and Xcc-8004.890.1 are separated by 48 nucleotidesXcc-8004.890.1 and Xcc-8004.891.1 overlap by 7 nucleotidesXcc-8004.891.1 and Xcc-8004.892.1 overlap by 169 nucleotides Xcc-8004.889.1: Xcc-8004.889.1 - Type IV secretion system protein VirD4, at 836,807 to 837,520 Xcc-8004.889.1 Xcc-8004.890.1: Xcc-8004.890.1 - Mobile element protein, at 837,569 to 837,832 Xcc-8004.890.1 Xcc-8004.891.1: Xcc-8004.891.1 - Mobile element protein, at 837,826 to 838,671 Xcc-8004.891.1 Xcc-8004.892.1: Xcc-8004.892.1 - Coupling protein VirD4, ATPase required for T-DNA transfer, at 838,503 to 839,714 Xcc-8004.892.1 Position (kb) 837 838 839Strain fitness (log2 ratio) -2 -1 0 1 2at 836.946 kb on - strand, within Xcc-8004.889.1at 837.013 kb on - strand, within Xcc-8004.889.1at 837.013 kb on - strand, within Xcc-8004.889.1at 837.013 kb on - strand, within Xcc-8004.889.1at 837.422 kb on + strand, within Xcc-8004.889.1at 837.422 kb on + strand, within Xcc-8004.889.1at 837.423 kb on - strand, within Xcc-8004.889.1at 837.423 kb on - strand, within Xcc-8004.889.1at 837.423 kb on - strand, within Xcc-8004.889.1at 837.424 kb on + strand, within Xcc-8004.889.1at 837.425 kb on - strand, within Xcc-8004.889.1at 838.669 kb on + strandat 838.754 kb on + strand, within Xcc-8004.892.1at 838.761 kb on + strand, within Xcc-8004.892.1at 838.842 kb on + strand, within Xcc-8004.892.1at 838.882 kb on - strand, within Xcc-8004.892.1at 839.091 kb on + strand, within Xcc-8004.892.1at 839.347 kb on - strand, within Xcc-8004.892.1at 839.451 kb on + strand, within Xcc-8004.892.1at 839.669 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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836,946 - Xcc-8004.889.1 0.19 +1.0
837,013 - Xcc-8004.889.1 0.29 -1.7
837,013 - Xcc-8004.889.1 0.29 -0.4
837,013 - Xcc-8004.889.1 0.29 +1.4
837,422 + Xcc-8004.889.1 0.86 +1.3
837,422 + Xcc-8004.889.1 0.86 +0.8
837,423 - Xcc-8004.889.1 0.86 -1.5
837,423 - Xcc-8004.889.1 0.86 +1.2
837,423 - Xcc-8004.889.1 0.86 -1.7
837,424 + Xcc-8004.889.1 0.86 +2.3
837,425 - Xcc-8004.889.1 0.87 +0.6
838,669 + -1.8
838,754 + Xcc-8004.892.1 0.21 +0.0
838,761 + Xcc-8004.892.1 0.21 -1.3
838,842 + Xcc-8004.892.1 0.28 +0.4
838,882 - Xcc-8004.892.1 0.31 -1.2
839,091 + Xcc-8004.892.1 0.49 +1.3
839,347 - Xcc-8004.892.1 0.70 -0.7
839,451 + Xcc-8004.892.1 0.78 +1.0
839,669 - -0.4

Or see this region's nucleotide sequence