Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.795.1 and Xcc-8004.797.1 are separated by 140 nucleotides Xcc-8004.797.1 and Xcc-8004.798.1 are separated by 172 nucleotides Xcc-8004.798.1 and Xcc-8004.800.1 are separated by 476 nucleotides
Xcc-8004.795.1: Xcc-8004.795.1 - Membrane protein, putative, at 739,041 to 739,916
Xcc-8004.795.1
Xcc-8004.797.1: Xcc-8004.797.1 - Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91), at 740,057 to 740,827
Xcc-8004.797.1
Xcc-8004.798.1: Xcc-8004.798.1 - putative; ORF located using Glimmer/Genemark, at 741,000 to 741,224
Xcc-8004.798.1
Xcc-8004.800.1: Xcc-8004.800.1 - Endoglucanase (EC 3.2.1.4), at 741,701 to 743,686
Xcc-8004.800.1
Position (kb) 740
741 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 739.135 kb on - strand, within Xcc-8004.795.1 at 739.570 kb on - strand, within Xcc-8004.795.1 at 739.644 kb on + strand, within Xcc-8004.795.1 at 739.644 kb on + strand, within Xcc-8004.795.1 at 739.645 kb on - strand, within Xcc-8004.795.1 at 739.645 kb on - strand, within Xcc-8004.795.1 at 739.707 kb on + strand, within Xcc-8004.795.1 at 739.708 kb on - strand, within Xcc-8004.795.1 at 739.708 kb on - strand, within Xcc-8004.795.1 at 739.708 kb on - strand, within Xcc-8004.795.1 at 739.752 kb on + strand, within Xcc-8004.795.1 at 739.786 kb on - strand, within Xcc-8004.795.1 at 739.928 kb on + strand at 740.091 kb on + strand at 740.092 kb on - strand at 740.092 kb on - strand at 740.133 kb on + strand at 740.134 kb on - strand, within Xcc-8004.797.1 at 740.704 kb on - strand, within Xcc-8004.797.1 at 741.009 kb on + strand at 741.251 kb on - strand at 741.318 kb on + strand at 741.319 kb on - strand at 741.321 kb on + strand at 741.366 kb on - strand at 741.366 kb on - strand at 741.373 kb on + strand at 741.597 kb on - strand at 741.623 kb on + strand at 741.640 kb on + strand at 741.641 kb on - strand at 741.641 kb on - strand at 741.772 kb on + strand at 741.772 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 739,135 - Xcc-8004.795.1 0.11 -1.2 739,570 - Xcc-8004.795.1 0.60 -0.2 739,644 + Xcc-8004.795.1 0.69 +0.1 739,644 + Xcc-8004.795.1 0.69 +0.9 739,645 - Xcc-8004.795.1 0.69 -0.2 739,645 - Xcc-8004.795.1 0.69 -0.8 739,707 + Xcc-8004.795.1 0.76 -0.8 739,708 - Xcc-8004.795.1 0.76 +1.6 739,708 - Xcc-8004.795.1 0.76 -0.5 739,708 - Xcc-8004.795.1 0.76 -1.8 739,752 + Xcc-8004.795.1 0.81 -2.4 739,786 - Xcc-8004.795.1 0.85 +2.3 739,928 + +1.3 740,091 + +0.6 740,092 - -0.8 740,092 - -3.1 740,133 + -1.3 740,134 - Xcc-8004.797.1 0.10 -1.0 740,704 - Xcc-8004.797.1 0.84 -2.2 741,009 + -2.1 741,251 - +0.1 741,318 + +1.2 741,319 - -1.2 741,321 + +0.3 741,366 - +1.2 741,366 - +1.7 741,373 + +0.1 741,597 - -2.4 741,623 + -3.0 741,640 + -0.7 741,641 - -1.6 741,641 - +0.4 741,772 + +1.8 741,772 + -0.4
Or see this region's nucleotide sequence