Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.761.1 and Xcc-8004.762.1 are separated by 262 nucleotides Xcc-8004.762.1 and Xcc-8004.764.1 are separated by 163 nucleotides Xcc-8004.764.1 and Xcc-8004.765.1 are separated by 141 nucleotides
Xcc-8004.761.1: Xcc-8004.761.1 - ThiJ/PfpI family protein, at 709,129 to 709,902
Xcc-8004.761.1
Xcc-8004.762.1: Xcc-8004.762.1 - FIG01210947: hypothetical protein, at 710,165 to 710,719
Xcc-8004.762.1
Xcc-8004.764.1: Xcc-8004.764.1 - FIG01213873: hypothetical protein, at 710,883 to 711,296
Xcc-8004.764.1
Xcc-8004.765.1: Xcc-8004.765.1 - L-fuco-beta-pyranose dehydrogenase (EC 1.1.1.122), at 711,438 to 713,024
Xcc-8004.765.1
Position (kb) 710
711
712 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 709.974 kb on + strand at 709.975 kb on - strand at 709.975 kb on - strand at 709.975 kb on - strand at 709.994 kb on - strand at 710.112 kb on + strand at 710.238 kb on + strand, within Xcc-8004.762.1 at 710.243 kb on - strand, within Xcc-8004.762.1 at 710.243 kb on - strand, within Xcc-8004.762.1 at 710.243 kb on - strand, within Xcc-8004.762.1 at 710.365 kb on + strand, within Xcc-8004.762.1 at 710.365 kb on + strand, within Xcc-8004.762.1 at 710.365 kb on + strand, within Xcc-8004.762.1 at 710.366 kb on - strand, within Xcc-8004.762.1 at 710.366 kb on - strand, within Xcc-8004.762.1 at 710.366 kb on - strand, within Xcc-8004.762.1 at 710.465 kb on + strand, within Xcc-8004.762.1 at 710.495 kb on + strand, within Xcc-8004.762.1 at 710.496 kb on - strand, within Xcc-8004.762.1 at 710.591 kb on + strand, within Xcc-8004.762.1 at 710.592 kb on - strand, within Xcc-8004.762.1 at 710.592 kb on - strand, within Xcc-8004.762.1 at 710.595 kb on - strand, within Xcc-8004.762.1 at 710.682 kb on + strand at 710.683 kb on - strand at 710.683 kb on - strand at 710.683 kb on - strand at 710.703 kb on - strand at 710.718 kb on - strand at 710.764 kb on + strand at 710.765 kb on - strand at 710.770 kb on + strand at 710.770 kb on + strand at 710.770 kb on + strand at 710.771 kb on - strand at 710.772 kb on + strand at 710.773 kb on - strand at 710.837 kb on + strand at 710.837 kb on + strand at 710.837 kb on + strand at 710.837 kb on + strand at 710.939 kb on + strand, within Xcc-8004.764.1 at 710.940 kb on - strand, within Xcc-8004.764.1 at 710.940 kb on - strand, within Xcc-8004.764.1 at 711.306 kb on + strand at 711.356 kb on + strand at 711.356 kb on + strand at 711.356 kb on + strand at 712.135 kb on + strand, within Xcc-8004.765.1 at 712.136 kb on - strand, within Xcc-8004.765.1 at 712.210 kb on + strand, within Xcc-8004.765.1 at 712.210 kb on + strand, within Xcc-8004.765.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 709,974 + -0.3 709,975 - +0.0 709,975 - -2.0 709,975 - -2.0 709,994 - -0.8 710,112 + -1.8 710,238 + Xcc-8004.762.1 0.13 +0.0 710,243 - Xcc-8004.762.1 0.14 +0.8 710,243 - Xcc-8004.762.1 0.14 +0.5 710,243 - Xcc-8004.762.1 0.14 +0.8 710,365 + Xcc-8004.762.1 0.36 +1.3 710,365 + Xcc-8004.762.1 0.36 -0.2 710,365 + Xcc-8004.762.1 0.36 -0.4 710,366 - Xcc-8004.762.1 0.36 -0.5 710,366 - Xcc-8004.762.1 0.36 -1.1 710,366 - Xcc-8004.762.1 0.36 -1.3 710,465 + Xcc-8004.762.1 0.54 -1.2 710,495 + Xcc-8004.762.1 0.59 -0.9 710,496 - Xcc-8004.762.1 0.60 +3.3 710,591 + Xcc-8004.762.1 0.77 -0.5 710,592 - Xcc-8004.762.1 0.77 -2.4 710,592 - Xcc-8004.762.1 0.77 +0.1 710,595 - Xcc-8004.762.1 0.77 +3.2 710,682 + +0.6 710,683 - +0.3 710,683 - -0.4 710,683 - +0.8 710,703 - -2.2 710,718 - +0.3 710,764 + +2.1 710,765 - -0.5 710,770 + +0.3 710,770 + -0.8 710,770 + -2.4 710,771 - -1.1 710,772 + +1.9 710,773 - +2.1 710,837 + -2.0 710,837 + -1.6 710,837 + -0.5 710,837 + -1.7 710,939 + Xcc-8004.764.1 0.14 -2.0 710,940 - Xcc-8004.764.1 0.14 -1.5 710,940 - Xcc-8004.764.1 0.14 -0.4 711,306 + +2.7 711,356 + -1.2 711,356 + +1.7 711,356 + +2.2 712,135 + Xcc-8004.765.1 0.44 +0.6 712,136 - Xcc-8004.765.1 0.44 +0.3 712,210 + Xcc-8004.765.1 0.49 +1.3 712,210 + Xcc-8004.765.1 0.49 +0.2
Or see this region's nucleotide sequence