Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.657.1 and Xcc-8004.658.1 are separated by 4 nucleotides Xcc-8004.658.1 and Xcc-8004.659.1 are separated by 8 nucleotides Xcc-8004.659.1 and Xcc-8004.661.1 are separated by 57 nucleotides Xcc-8004.661.1 and Xcc-8004.662.1 are separated by 54 nucleotides
Xcc-8004.657.1: Xcc-8004.657.1 - Phosphoribosylamine--glycine ligase (EC 6.3.4.13), at 599,893 to 601,188
Xcc-8004.657.1
Xcc-8004.658.1: Xcc-8004.658.1 - FIG01211216: hypothetical protein, at 601,193 to 601,891
Xcc-8004.658.1
Xcc-8004.659.1: Xcc-8004.659.1 - IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3), at 601,900 to 603,483
Xcc-8004.659.1
Xcc-8004.661.1: Xcc-8004.661.1 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5), at 603,541 to 604,173
Xcc-8004.661.1
Xcc-8004.662.1: Xcc-8004.662.1 - Putative lipase in cluster with Phosphatidate cytidylyltransferase, at 604,228 to 605,991
Xcc-8004.662.1
Position (kb) 601
602
603
604 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 601.195 kb on - strand at 601.217 kb on + strand at 601.217 kb on + strand at 601.218 kb on - strand at 601.218 kb on - strand at 601.222 kb on + strand at 601.222 kb on + strand at 601.222 kb on + strand at 601.222 kb on + strand at 601.222 kb on + strand at 601.222 kb on + strand at 601.222 kb on + strand at 601.223 kb on - strand at 601.223 kb on - strand at 601.223 kb on - strand at 601.251 kb on - strand at 601.264 kb on + strand, within Xcc-8004.658.1 at 601.264 kb on + strand, within Xcc-8004.658.1 at 601.265 kb on - strand, within Xcc-8004.658.1 at 601.345 kb on - strand, within Xcc-8004.658.1 at 601.358 kb on - strand, within Xcc-8004.658.1 at 601.370 kb on + strand, within Xcc-8004.658.1 at 601.371 kb on - strand, within Xcc-8004.658.1 at 601.371 kb on - strand, within Xcc-8004.658.1 at 601.396 kb on - strand, within Xcc-8004.658.1 at 601.396 kb on - strand, within Xcc-8004.658.1 at 601.396 kb on - strand, within Xcc-8004.658.1 at 601.405 kb on + strand, within Xcc-8004.658.1 at 601.405 kb on + strand, within Xcc-8004.658.1 at 601.474 kb on + strand, within Xcc-8004.658.1 at 601.500 kb on - strand, within Xcc-8004.658.1 at 601.500 kb on - strand, within Xcc-8004.658.1 at 601.500 kb on - strand, within Xcc-8004.658.1 at 601.553 kb on + strand, within Xcc-8004.658.1 at 601.553 kb on + strand, within Xcc-8004.658.1 at 601.553 kb on + strand, within Xcc-8004.658.1 at 601.554 kb on - strand, within Xcc-8004.658.1 at 601.554 kb on - strand, within Xcc-8004.658.1 at 601.584 kb on + strand, within Xcc-8004.658.1 at 601.584 kb on + strand, within Xcc-8004.658.1 at 601.584 kb on + strand, within Xcc-8004.658.1 at 601.584 kb on + strand, within Xcc-8004.658.1 at 601.584 kb on + strand, within Xcc-8004.658.1 at 601.584 kb on + strand, within Xcc-8004.658.1 at 601.630 kb on + strand, within Xcc-8004.658.1 at 601.631 kb on - strand, within Xcc-8004.658.1 at 601.631 kb on - strand, within Xcc-8004.658.1 at 601.658 kb on - strand, within Xcc-8004.658.1 at 601.659 kb on + strand, within Xcc-8004.658.1 at 601.660 kb on - strand, within Xcc-8004.658.1 at 601.829 kb on + strand at 601.830 kb on - strand at 601.863 kb on - strand at 601.865 kb on + strand at 601.865 kb on + strand at 601.865 kb on + strand at 601.866 kb on - strand at 601.866 kb on - strand at 601.885 kb on + strand at 601.886 kb on - strand at 601.886 kb on - strand at 602.092 kb on - strand, within Xcc-8004.659.1 at 602.189 kb on + strand, within Xcc-8004.659.1 at 602.190 kb on - strand, within Xcc-8004.659.1 at 602.444 kb on + strand, within Xcc-8004.659.1 at 602.576 kb on + strand, within Xcc-8004.659.1 at 602.576 kb on + strand, within Xcc-8004.659.1 at 602.576 kb on + strand, within Xcc-8004.659.1 at 602.859 kb on + strand, within Xcc-8004.659.1 at 602.903 kb on + strand, within Xcc-8004.659.1 at 602.904 kb on - strand, within Xcc-8004.659.1 at 603.024 kb on - strand, within Xcc-8004.659.1 at 603.024 kb on - strand, within Xcc-8004.659.1 at 603.521 kb on + strand at 603.521 kb on + strand at 603.521 kb on + strand at 603.521 kb on + strand at 603.522 kb on - strand at 603.571 kb on + strand at 603.571 kb on + strand at 603.571 kb on + strand at 603.571 kb on + strand at 603.571 kb on + strand at 603.571 kb on + strand at 603.571 kb on + strand at 603.571 kb on + strand at 603.571 kb on + strand at 603.571 kb on + strand at 603.571 kb on + strand at 603.572 kb on - strand at 603.572 kb on - strand at 603.572 kb on - strand at 603.572 kb on - strand at 603.700 kb on + strand, within Xcc-8004.661.1 at 603.730 kb on + strand, within Xcc-8004.661.1 at 603.730 kb on + strand, within Xcc-8004.661.1 at 603.730 kb on + strand, within Xcc-8004.661.1 at 603.730 kb on + strand, within Xcc-8004.661.1 at 603.730 kb on + strand, within Xcc-8004.661.1 at 603.730 kb on + strand, within Xcc-8004.661.1 at 603.731 kb on - strand, within Xcc-8004.661.1 at 603.731 kb on - strand, within Xcc-8004.661.1 at 603.731 kb on - strand, within Xcc-8004.661.1 at 603.731 kb on - strand, within Xcc-8004.661.1 at 603.731 kb on - strand, within Xcc-8004.661.1 at 603.829 kb on + strand, within Xcc-8004.661.1 at 603.872 kb on - strand, within Xcc-8004.661.1 at 603.992 kb on - strand, within Xcc-8004.661.1 at 604.241 kb on + strand at 604.241 kb on + strand at 604.241 kb on + strand at 604.242 kb on - strand at 604.242 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 601,195 - -1.7 601,217 + +0.8 601,217 + -3.2 601,218 - -1.2 601,218 - +0.5 601,222 + +0.8 601,222 + +0.2 601,222 + +0.2 601,222 + +1.4 601,222 + +1.6 601,222 + -1.1 601,222 + -0.1 601,223 - +1.7 601,223 - +1.3 601,223 - -2.5 601,251 - -1.1 601,264 + Xcc-8004.658.1 0.10 -2.4 601,264 + Xcc-8004.658.1 0.10 -1.1 601,265 - Xcc-8004.658.1 0.10 -0.6 601,345 - Xcc-8004.658.1 0.22 +0.1 601,358 - Xcc-8004.658.1 0.24 -1.7 601,370 + Xcc-8004.658.1 0.25 -1.7 601,371 - Xcc-8004.658.1 0.25 -0.2 601,371 - Xcc-8004.658.1 0.25 +2.4 601,396 - Xcc-8004.658.1 0.29 -1.0 601,396 - Xcc-8004.658.1 0.29 +2.4 601,396 - Xcc-8004.658.1 0.29 +0.4 601,405 + Xcc-8004.658.1 0.30 -2.2 601,405 + Xcc-8004.658.1 0.30 -3.7 601,474 + Xcc-8004.658.1 0.40 -0.5 601,500 - Xcc-8004.658.1 0.44 -1.2 601,500 - Xcc-8004.658.1 0.44 +1.4 601,500 - Xcc-8004.658.1 0.44 +1.9 601,553 + Xcc-8004.658.1 0.52 -1.3 601,553 + Xcc-8004.658.1 0.52 -1.2 601,553 + Xcc-8004.658.1 0.52 +0.0 601,554 - Xcc-8004.658.1 0.52 -0.8 601,554 - Xcc-8004.658.1 0.52 +2.4 601,584 + Xcc-8004.658.1 0.56 -1.0 601,584 + Xcc-8004.658.1 0.56 +0.0 601,584 + Xcc-8004.658.1 0.56 -1.2 601,584 + Xcc-8004.658.1 0.56 -1.6 601,584 + Xcc-8004.658.1 0.56 -2.4 601,584 + Xcc-8004.658.1 0.56 -0.6 601,630 + Xcc-8004.658.1 0.63 -2.8 601,631 - Xcc-8004.658.1 0.63 +1.4 601,631 - Xcc-8004.658.1 0.63 -3.0 601,658 - Xcc-8004.658.1 0.67 -0.9 601,659 + Xcc-8004.658.1 0.67 -3.0 601,660 - Xcc-8004.658.1 0.67 -2.6 601,829 + -0.2 601,830 - -2.0 601,863 - +0.5 601,865 + +0.9 601,865 + +1.4 601,865 + -1.5 601,866 - +0.0 601,866 - -0.6 601,885 + +0.0 601,886 - -1.5 601,886 - +2.8 602,092 - Xcc-8004.659.1 0.12 -1.0 602,189 + Xcc-8004.659.1 0.18 -0.2 602,190 - Xcc-8004.659.1 0.18 -2.5 602,444 + Xcc-8004.659.1 0.34 -0.4 602,576 + Xcc-8004.659.1 0.43 -0.4 602,576 + Xcc-8004.659.1 0.43 -2.3 602,576 + Xcc-8004.659.1 0.43 -1.4 602,859 + Xcc-8004.659.1 0.61 +0.8 602,903 + Xcc-8004.659.1 0.63 -1.4 602,904 - Xcc-8004.659.1 0.63 +0.0 603,024 - Xcc-8004.659.1 0.71 +0.4 603,024 - Xcc-8004.659.1 0.71 +0.8 603,521 + -0.5 603,521 + +0.5 603,521 + +0.4 603,521 + -1.6 603,522 - +0.8 603,571 + +0.2 603,571 + +0.5 603,571 + +0.8 603,571 + -1.5 603,571 + -0.8 603,571 + -2.0 603,571 + -2.0 603,571 + +0.7 603,571 + +4.8 603,571 + +1.1 603,571 + +1.1 603,572 - -1.5 603,572 - +1.6 603,572 - +3.3 603,572 - +0.2 603,700 + Xcc-8004.661.1 0.25 -0.2 603,730 + Xcc-8004.661.1 0.30 +1.0 603,730 + Xcc-8004.661.1 0.30 -0.2 603,730 + Xcc-8004.661.1 0.30 -0.3 603,730 + Xcc-8004.661.1 0.30 +1.7 603,730 + Xcc-8004.661.1 0.30 -1.9 603,730 + Xcc-8004.661.1 0.30 +0.3 603,731 - Xcc-8004.661.1 0.30 -2.5 603,731 - Xcc-8004.661.1 0.30 +1.4 603,731 - Xcc-8004.661.1 0.30 -0.2 603,731 - Xcc-8004.661.1 0.30 -1.4 603,731 - Xcc-8004.661.1 0.30 -1.5 603,829 + Xcc-8004.661.1 0.45 -0.3 603,872 - Xcc-8004.661.1 0.52 +1.8 603,992 - Xcc-8004.661.1 0.71 +0.6 604,241 + -2.3 604,241 + +4.0 604,241 + +2.4 604,242 - +0.8 604,242 - -1.5
Or see this region's nucleotide sequence