Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5210.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.5209.1 and Xcc-8004.5210.1 are separated by 42 nucleotidesXcc-8004.5210.1 and Xcc-8004.5211.1 are separated by 65 nucleotidesXcc-8004.5211.1 and Xcc-8004.5212.1 overlap by 4 nucleotides Xcc-8004.5209.1: Xcc-8004.5209.1 - Putative predicted metal-dependent hydrolase, at 4,943,849 to 4,944,634 Xcc-8004.5209.1 Xcc-8004.5210.1: Xcc-8004.5210.1 - DNA recombination-dependent growth factor C, at 4,944,677 to 4,945,585 Xcc-8004.5210.1 Xcc-8004.5211.1: Xcc-8004.5211.1 - tRNA(Cytosine32)-2-thiocytidine synthetase, at 4,945,651 to 4,946,553 Xcc-8004.5211.1 Xcc-8004.5212.1: Xcc-8004.5212.1 - hypothetical protein, at 4,946,550 to 4,946,888 Xcc-8004.5212.1 Position (kb) 4944 4945 4946Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4943.818 kb on + strandat 4943.818 kb on + strandat 4943.819 kb on - strandat 4943.819 kb on - strandat 4943.819 kb on - strandat 4943.819 kb on - strandat 4943.819 kb on - strandat 4943.910 kb on + strandat 4943.910 kb on + strandat 4943.911 kb on - strandat 4943.911 kb on - strandat 4944.015 kb on + strand, within Xcc-8004.5209.1at 4944.015 kb on + strand, within Xcc-8004.5209.1at 4944.015 kb on + strand, within Xcc-8004.5209.1at 4944.015 kb on + strand, within Xcc-8004.5209.1at 4944.015 kb on + strand, within Xcc-8004.5209.1at 4944.016 kb on - strand, within Xcc-8004.5209.1at 4944.016 kb on - strand, within Xcc-8004.5209.1at 4944.151 kb on - strand, within Xcc-8004.5209.1at 4944.151 kb on - strand, within Xcc-8004.5209.1at 4944.151 kb on - strand, within Xcc-8004.5209.1at 4944.196 kb on - strand, within Xcc-8004.5209.1at 4944.196 kb on - strand, within Xcc-8004.5209.1at 4944.196 kb on - strand, within Xcc-8004.5209.1at 4944.196 kb on - strand, within Xcc-8004.5209.1at 4944.196 kb on - strand, within Xcc-8004.5209.1at 4944.289 kb on - strand, within Xcc-8004.5209.1at 4944.387 kb on + strand, within Xcc-8004.5209.1at 4944.388 kb on - strand, within Xcc-8004.5209.1at 4944.646 kb on - strandat 4944.646 kb on - strandat 4944.646 kb on - strandat 4945.185 kb on + strand, within Xcc-8004.5210.1at 4945.186 kb on - strand, within Xcc-8004.5210.1at 4945.653 kb on - strandat 4945.955 kb on + strand, within Xcc-8004.5211.1at 4945.955 kb on + strand, within Xcc-8004.5211.1at 4945.955 kb on + strand, within Xcc-8004.5211.1at 4945.956 kb on - strand, within Xcc-8004.5211.1at 4945.956 kb on - strand, within Xcc-8004.5211.1at 4945.956 kb on - strand, within Xcc-8004.5211.1at 4946.117 kb on + strand, within Xcc-8004.5211.1at 4946.123 kb on + strand, within Xcc-8004.5211.1at 4946.123 kb on + strand, within Xcc-8004.5211.1at 4946.123 kb on + strand, within Xcc-8004.5211.1at 4946.123 kb on + strand, within Xcc-8004.5211.1at 4946.124 kb on - strand, within Xcc-8004.5211.1at 4946.124 kb on - strand, within Xcc-8004.5211.1at 4946.201 kb on + strand, within Xcc-8004.5211.1at 4946.201 kb on + strand, within Xcc-8004.5211.1at 4946.201 kb on + strand, within Xcc-8004.5211.1at 4946.201 kb on + strand, within Xcc-8004.5211.1at 4946.202 kb on - strand, within Xcc-8004.5211.1at 4946.202 kb on - strand, within Xcc-8004.5211.1at 4946.202 kb on - strand, within Xcc-8004.5211.1at 4946.202 kb on - strand, within Xcc-8004.5211.1at 4946.202 kb on - strand, within Xcc-8004.5211.1at 4946.202 kb on - strand, within Xcc-8004.5211.1at 4946.202 kb on - strand, within Xcc-8004.5211.1at 4946.202 kb on - strand, within Xcc-8004.5211.1at 4946.250 kb on - strand, within Xcc-8004.5211.1at 4946.366 kb on + strand, within Xcc-8004.5211.1at 4946.366 kb on + strand, within Xcc-8004.5211.1at 4946.366 kb on + strand, within Xcc-8004.5211.1at 4946.366 kb on + strand, within Xcc-8004.5211.1at 4946.366 kb on + strand, within Xcc-8004.5211.1at 4946.366 kb on + strand, within Xcc-8004.5211.1at 4946.367 kb on - strand, within Xcc-8004.5211.1at 4946.367 kb on - strand, within Xcc-8004.5211.1at 4946.367 kb on - strand, within Xcc-8004.5211.1at 4946.367 kb on - strand, within Xcc-8004.5211.1at 4946.367 kb on - strand, within Xcc-8004.5211.1at 4946.367 kb on - strand, within Xcc-8004.5211.1at 4946.367 kb on - strand, within Xcc-8004.5211.1at 4946.367 kb on - strand, within Xcc-8004.5211.1at 4946.367 kb on - strand, within Xcc-8004.5211.1at 4946.367 kb on - strand, within Xcc-8004.5211.1at 4946.367 kb on - strand, within Xcc-8004.5211.1at 4946.553 kb on + strandat 4946.554 kb on - strandat 4946.567 kb on + strandat 4946.568 kb on - strandat 4946.568 kb on - strandat 4946.568 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
remove
4,943,818 + -2.9
4,943,818 + -1.8
4,943,819 - -1.6
4,943,819 - -1.8
4,943,819 - -0.6
4,943,819 - +0.4
4,943,819 - +0.4
4,943,910 + -0.7
4,943,910 + +0.1
4,943,911 - +1.3
4,943,911 - -0.7
4,944,015 + Xcc-8004.5209.1 0.21 +0.6
4,944,015 + Xcc-8004.5209.1 0.21 -0.4
4,944,015 + Xcc-8004.5209.1 0.21 +0.4
4,944,015 + Xcc-8004.5209.1 0.21 -0.8
4,944,015 + Xcc-8004.5209.1 0.21 -0.1
4,944,016 - Xcc-8004.5209.1 0.21 -0.8
4,944,016 - Xcc-8004.5209.1 0.21 -0.5
4,944,151 - Xcc-8004.5209.1 0.38 +1.6
4,944,151 - Xcc-8004.5209.1 0.38 +0.3
4,944,151 - Xcc-8004.5209.1 0.38 -0.8
4,944,196 - Xcc-8004.5209.1 0.44 -0.3
4,944,196 - Xcc-8004.5209.1 0.44 +1.4
4,944,196 - Xcc-8004.5209.1 0.44 -2.4
4,944,196 - Xcc-8004.5209.1 0.44 -1.1
4,944,196 - Xcc-8004.5209.1 0.44 -0.8
4,944,289 - Xcc-8004.5209.1 0.56 +1.6
4,944,387 + Xcc-8004.5209.1 0.68 +1.4
4,944,388 - Xcc-8004.5209.1 0.69 -2.3
4,944,646 - -0.0
4,944,646 - -0.6
4,944,646 - -2.1
4,945,185 + Xcc-8004.5210.1 0.56 +3.0
4,945,186 - Xcc-8004.5210.1 0.56 -0.4
4,945,653 - -1.8
4,945,955 + Xcc-8004.5211.1 0.34 -1.6
4,945,955 + Xcc-8004.5211.1 0.34 -0.9
4,945,955 + Xcc-8004.5211.1 0.34 -0.9
4,945,956 - Xcc-8004.5211.1 0.34 -1.3
4,945,956 - Xcc-8004.5211.1 0.34 +1.5
4,945,956 - Xcc-8004.5211.1 0.34 -2.5
4,946,117 + Xcc-8004.5211.1 0.52 +0.7
4,946,123 + Xcc-8004.5211.1 0.52 +0.9
4,946,123 + Xcc-8004.5211.1 0.52 -1.3
4,946,123 + Xcc-8004.5211.1 0.52 +0.1
4,946,123 + Xcc-8004.5211.1 0.52 +0.6
4,946,124 - Xcc-8004.5211.1 0.52 +0.7
4,946,124 - Xcc-8004.5211.1 0.52 -0.1
4,946,201 + Xcc-8004.5211.1 0.61 +0.2
4,946,201 + Xcc-8004.5211.1 0.61 +1.5
4,946,201 + Xcc-8004.5211.1 0.61 -0.8
4,946,201 + Xcc-8004.5211.1 0.61 +0.9
4,946,202 - Xcc-8004.5211.1 0.61 -1.2
4,946,202 - Xcc-8004.5211.1 0.61 +0.1
4,946,202 - Xcc-8004.5211.1 0.61 +1.7
4,946,202 - Xcc-8004.5211.1 0.61 -1.0
4,946,202 - Xcc-8004.5211.1 0.61 -0.3
4,946,202 - Xcc-8004.5211.1 0.61 +0.4
4,946,202 - Xcc-8004.5211.1 0.61 +0.4
4,946,202 - Xcc-8004.5211.1 0.61 -0.2
4,946,250 - Xcc-8004.5211.1 0.66 +0.7
4,946,366 + Xcc-8004.5211.1 0.79 +0.8
4,946,366 + Xcc-8004.5211.1 0.79 +0.5
4,946,366 + Xcc-8004.5211.1 0.79 +0.8
4,946,366 + Xcc-8004.5211.1 0.79 -1.9
4,946,366 + Xcc-8004.5211.1 0.79 -1.3
4,946,366 + Xcc-8004.5211.1 0.79 -1.1
4,946,367 - Xcc-8004.5211.1 0.79 +1.5
4,946,367 - Xcc-8004.5211.1 0.79 +0.1
4,946,367 - Xcc-8004.5211.1 0.79 -0.2
4,946,367 - Xcc-8004.5211.1 0.79 -3.1
4,946,367 - Xcc-8004.5211.1 0.79 -2.5
4,946,367 - Xcc-8004.5211.1 0.79 +0.6
4,946,367 - Xcc-8004.5211.1 0.79 +0.8
4,946,367 - Xcc-8004.5211.1 0.79 -0.7
4,946,367 - Xcc-8004.5211.1 0.79 -0.5
4,946,367 - Xcc-8004.5211.1 0.79 -0.5
4,946,367 - Xcc-8004.5211.1 0.79 -2.3
4,946,553 + -0.5
4,946,554 - +1.4
4,946,567 + +1.3
4,946,568 - -0.3
4,946,568 - -1.2
4,946,568 - +0.0

Or see this region's nucleotide sequence