Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5206.1 and Xcc-8004.5207.1 overlap by 4 nucleotides Xcc-8004.5207.1 and Xcc-8004.5208.1 overlap by 38 nucleotides Xcc-8004.5208.1 and Xcc-8004.5209.1 are separated by 236 nucleotides
Xcc-8004.5206.1: Xcc-8004.5206.1 - Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1), at 4,941,303 to 4,942,352
Xcc-8004.5206.1
Xcc-8004.5207.1: Xcc-8004.5207.1 - 2-hydroxymuconic semialdehyde hydrolase (EC 3.7.1.9), at 4,942,349 to 4,943,221
Xcc-8004.5207.1
Xcc-8004.5208.1: Xcc-8004.5208.1 - FIG01210757: hypothetical protein, at 4,943,184 to 4,943,612
Xcc-8004.5208.1
Xcc-8004.5209.1: Xcc-8004.5209.1 - Putative predicted metal-dependent hydrolase, at 4,943,849 to 4,944,634
Xcc-8004.5209.1
Position (kb) 4942
4943
4944 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4942.571 kb on + strand, within Xcc-8004.5207.1 at 4942.572 kb on - strand, within Xcc-8004.5207.1 at 4942.572 kb on - strand, within Xcc-8004.5207.1 at 4942.608 kb on + strand, within Xcc-8004.5207.1 at 4942.609 kb on - strand, within Xcc-8004.5207.1 at 4942.609 kb on - strand, within Xcc-8004.5207.1 at 4942.609 kb on - strand, within Xcc-8004.5207.1 at 4942.609 kb on - strand, within Xcc-8004.5207.1 at 4942.609 kb on - strand, within Xcc-8004.5207.1 at 4942.934 kb on + strand, within Xcc-8004.5207.1 at 4942.934 kb on + strand, within Xcc-8004.5207.1 at 4942.935 kb on - strand, within Xcc-8004.5207.1 at 4942.935 kb on - strand, within Xcc-8004.5207.1 at 4942.935 kb on - strand, within Xcc-8004.5207.1 at 4943.017 kb on + strand, within Xcc-8004.5207.1 at 4943.017 kb on + strand, within Xcc-8004.5207.1 at 4943.017 kb on + strand, within Xcc-8004.5207.1 at 4943.017 kb on + strand, within Xcc-8004.5207.1 at 4943.018 kb on - strand, within Xcc-8004.5207.1 at 4943.018 kb on - strand, within Xcc-8004.5207.1 at 4943.018 kb on - strand, within Xcc-8004.5207.1 at 4943.063 kb on + strand, within Xcc-8004.5207.1 at 4943.063 kb on + strand, within Xcc-8004.5207.1 at 4943.064 kb on - strand, within Xcc-8004.5207.1 at 4943.064 kb on - strand, within Xcc-8004.5207.1 at 4943.220 kb on - strand at 4943.220 kb on - strand at 4943.284 kb on + strand, within Xcc-8004.5208.1 at 4943.313 kb on + strand, within Xcc-8004.5208.1 at 4943.313 kb on + strand, within Xcc-8004.5208.1 at 4943.313 kb on + strand, within Xcc-8004.5208.1 at 4943.313 kb on + strand, within Xcc-8004.5208.1 at 4943.313 kb on + strand, within Xcc-8004.5208.1 at 4943.313 kb on + strand, within Xcc-8004.5208.1 at 4943.313 kb on + strand, within Xcc-8004.5208.1 at 4943.314 kb on - strand, within Xcc-8004.5208.1 at 4943.314 kb on - strand, within Xcc-8004.5208.1 at 4943.314 kb on - strand, within Xcc-8004.5208.1 at 4943.314 kb on - strand, within Xcc-8004.5208.1 at 4943.344 kb on + strand, within Xcc-8004.5208.1 at 4943.344 kb on + strand, within Xcc-8004.5208.1 at 4943.345 kb on - strand, within Xcc-8004.5208.1 at 4943.345 kb on - strand, within Xcc-8004.5208.1 at 4943.345 kb on - strand, within Xcc-8004.5208.1 at 4943.345 kb on - strand, within Xcc-8004.5208.1 at 4943.410 kb on + strand, within Xcc-8004.5208.1 at 4943.410 kb on + strand, within Xcc-8004.5208.1 at 4943.411 kb on - strand, within Xcc-8004.5208.1 at 4943.411 kb on - strand, within Xcc-8004.5208.1 at 4943.411 kb on - strand, within Xcc-8004.5208.1 at 4943.411 kb on - strand, within Xcc-8004.5208.1 at 4943.599 kb on - strand at 4943.611 kb on - strand at 4943.651 kb on + strand at 4943.651 kb on + strand at 4943.651 kb on + strand at 4943.651 kb on + strand at 4943.651 kb on + strand at 4943.651 kb on + strand at 4943.651 kb on + strand at 4943.652 kb on - strand at 4943.652 kb on - strand at 4943.818 kb on + strand at 4943.818 kb on + strand at 4943.819 kb on - strand at 4943.819 kb on - strand at 4943.819 kb on - strand at 4943.819 kb on - strand at 4943.819 kb on - strand at 4943.910 kb on + strand at 4943.910 kb on + strand at 4943.911 kb on - strand at 4943.911 kb on - strand at 4944.015 kb on + strand, within Xcc-8004.5209.1 at 4944.015 kb on + strand, within Xcc-8004.5209.1 at 4944.015 kb on + strand, within Xcc-8004.5209.1 at 4944.015 kb on + strand, within Xcc-8004.5209.1 at 4944.015 kb on + strand, within Xcc-8004.5209.1 at 4944.016 kb on - strand, within Xcc-8004.5209.1 at 4944.016 kb on - strand, within Xcc-8004.5209.1 at 4944.151 kb on - strand, within Xcc-8004.5209.1 at 4944.151 kb on - strand, within Xcc-8004.5209.1 at 4944.151 kb on - strand, within Xcc-8004.5209.1 at 4944.196 kb on - strand, within Xcc-8004.5209.1 at 4944.196 kb on - strand, within Xcc-8004.5209.1 at 4944.196 kb on - strand, within Xcc-8004.5209.1 at 4944.196 kb on - strand, within Xcc-8004.5209.1 at 4944.196 kb on - strand, within Xcc-8004.5209.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 4,942,571 + Xcc-8004.5207.1 0.25 -0.3 4,942,572 - Xcc-8004.5207.1 0.26 +0.4 4,942,572 - Xcc-8004.5207.1 0.26 -2.2 4,942,608 + Xcc-8004.5207.1 0.30 +1.8 4,942,609 - Xcc-8004.5207.1 0.30 -2.1 4,942,609 - Xcc-8004.5207.1 0.30 -2.4 4,942,609 - Xcc-8004.5207.1 0.30 -1.7 4,942,609 - Xcc-8004.5207.1 0.30 -0.3 4,942,609 - Xcc-8004.5207.1 0.30 -1.5 4,942,934 + Xcc-8004.5207.1 0.67 -1.3 4,942,934 + Xcc-8004.5207.1 0.67 -2.2 4,942,935 - Xcc-8004.5207.1 0.67 +1.1 4,942,935 - Xcc-8004.5207.1 0.67 -1.5 4,942,935 - Xcc-8004.5207.1 0.67 -2.5 4,943,017 + Xcc-8004.5207.1 0.77 +1.8 4,943,017 + Xcc-8004.5207.1 0.77 -0.7 4,943,017 + Xcc-8004.5207.1 0.77 +0.0 4,943,017 + Xcc-8004.5207.1 0.77 -0.4 4,943,018 - Xcc-8004.5207.1 0.77 +0.4 4,943,018 - Xcc-8004.5207.1 0.77 +0.4 4,943,018 - Xcc-8004.5207.1 0.77 -1.2 4,943,063 + Xcc-8004.5207.1 0.82 +1.0 4,943,063 + Xcc-8004.5207.1 0.82 -0.4 4,943,064 - Xcc-8004.5207.1 0.82 +1.3 4,943,064 - Xcc-8004.5207.1 0.82 -1.6 4,943,220 - +0.9 4,943,220 - +1.5 4,943,284 + Xcc-8004.5208.1 0.23 -2.2 4,943,313 + Xcc-8004.5208.1 0.30 +0.1 4,943,313 + Xcc-8004.5208.1 0.30 -1.7 4,943,313 + Xcc-8004.5208.1 0.30 +1.4 4,943,313 + Xcc-8004.5208.1 0.30 -1.5 4,943,313 + Xcc-8004.5208.1 0.30 -0.9 4,943,313 + Xcc-8004.5208.1 0.30 -2.2 4,943,313 + Xcc-8004.5208.1 0.30 -3.1 4,943,314 - Xcc-8004.5208.1 0.30 +0.2 4,943,314 - Xcc-8004.5208.1 0.30 -2.6 4,943,314 - Xcc-8004.5208.1 0.30 +0.8 4,943,314 - Xcc-8004.5208.1 0.30 -0.0 4,943,344 + Xcc-8004.5208.1 0.37 -2.8 4,943,344 + Xcc-8004.5208.1 0.37 -0.8 4,943,345 - Xcc-8004.5208.1 0.38 +2.7 4,943,345 - Xcc-8004.5208.1 0.38 +0.1 4,943,345 - Xcc-8004.5208.1 0.38 +1.9 4,943,345 - Xcc-8004.5208.1 0.38 -1.0 4,943,410 + Xcc-8004.5208.1 0.53 -2.4 4,943,410 + Xcc-8004.5208.1 0.53 -0.2 4,943,411 - Xcc-8004.5208.1 0.53 +1.6 4,943,411 - Xcc-8004.5208.1 0.53 +2.4 4,943,411 - Xcc-8004.5208.1 0.53 -0.3 4,943,411 - Xcc-8004.5208.1 0.53 -0.8 4,943,599 - -0.1 4,943,611 - -0.4 4,943,651 + +2.4 4,943,651 + -1.1 4,943,651 + -0.9 4,943,651 + +1.7 4,943,651 + +0.2 4,943,651 + -0.5 4,943,651 + +0.6 4,943,652 - +0.6 4,943,652 - +0.4 4,943,818 + -2.9 4,943,818 + -1.8 4,943,819 - -1.6 4,943,819 - -1.8 4,943,819 - -0.6 4,943,819 - +0.4 4,943,819 - +0.4 4,943,910 + -0.7 4,943,910 + +0.1 4,943,911 - +1.3 4,943,911 - -0.7 4,944,015 + Xcc-8004.5209.1 0.21 +0.6 4,944,015 + Xcc-8004.5209.1 0.21 -0.4 4,944,015 + Xcc-8004.5209.1 0.21 +0.4 4,944,015 + Xcc-8004.5209.1 0.21 -0.8 4,944,015 + Xcc-8004.5209.1 0.21 -0.1 4,944,016 - Xcc-8004.5209.1 0.21 -0.8 4,944,016 - Xcc-8004.5209.1 0.21 -0.5 4,944,151 - Xcc-8004.5209.1 0.38 +1.6 4,944,151 - Xcc-8004.5209.1 0.38 +0.3 4,944,151 - Xcc-8004.5209.1 0.38 -0.8 4,944,196 - Xcc-8004.5209.1 0.44 -0.3 4,944,196 - Xcc-8004.5209.1 0.44 +1.4 4,944,196 - Xcc-8004.5209.1 0.44 -2.4 4,944,196 - Xcc-8004.5209.1 0.44 -1.1 4,944,196 - Xcc-8004.5209.1 0.44 -0.8
Or see this region's nucleotide sequence