Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5059.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.5055.1 and Xcc-8004.5057.1 overlap by 32 nucleotidesXcc-8004.5057.1 and Xcc-8004.5059.1 are separated by 98 nucleotidesXcc-8004.5059.1 and Xcc-8004.5060.1 are separated by 179 nucleotides Xcc-8004.5055.1: Xcc-8004.5055.1 - thioredoxin, putative, at 4,792,261 to 4,792,590 Xcc-8004.5055.1 Xcc-8004.5057.1: Xcc-8004.5057.1 - flavodoxin, at 4,792,559 to 4,793,044 Xcc-8004.5057.1 Xcc-8004.5059.1: Xcc-8004.5059.1 - Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1), at 4,793,143 to 4,794,186 Xcc-8004.5059.1 Xcc-8004.5060.1: Xcc-8004.5060.1 - Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1), at 4,794,366 to 4,796,849 Xcc-8004.5060.1 Position (kb) 4793 4794 4795Strain fitness (log2 ratio) -2 -1 0 1 2at 4792.188 kb on + strandat 4792.189 kb on - strandat 4792.210 kb on - strandat 4793.107 kb on - strandat 4793.107 kb on - strandat 4793.107 kb on - strandat 4794.308 kb on - strandat 4794.352 kb on - strandat 4794.352 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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4,792,188 + -2.6
4,792,189 - +1.7
4,792,210 - -2.3
4,793,107 - -0.1
4,793,107 - -0.1
4,793,107 - +0.8
4,794,308 - +0.7
4,794,352 - +2.4
4,794,352 - -0.3

Or see this region's nucleotide sequence