Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.502.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.500.1 and Xcc-8004.501.1 are separated by 287 nucleotidesXcc-8004.501.1 and Xcc-8004.502.1 are separated by 16 nucleotidesXcc-8004.502.1 and Xcc-8004.503.1 are separated by 31 nucleotidesXcc-8004.503.1 and Xcc-8004.504.1 are separated by 2 nucleotides Xcc-8004.500.1: Xcc-8004.500.1 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 458,359 to 459,141 Xcc-8004.500.1 Xcc-8004.501.1: Xcc-8004.501.1 - hypothetical protein, at 459,429 to 459,917 Xcc-8004.501.1 Xcc-8004.502.1: Xcc-8004.502.1 - Biotin synthesis protein BioH, at 459,934 to 460,695 Xcc-8004.502.1 Xcc-8004.503.1: Xcc-8004.503.1 - FIG01209720: hypothetical protein, at 460,727 to 461,092 Xcc-8004.503.1 Xcc-8004.504.1: Xcc-8004.504.1 - 8-amino-7-oxononanoate synthase (EC 2.3.1.47), at 461,095 to 462,300 Xcc-8004.504.1 Position (kb) 459 460 461Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 458.962 kb on + strand, within Xcc-8004.500.1at 458.963 kb on - strand, within Xcc-8004.500.1at 458.963 kb on - strand, within Xcc-8004.500.1at 458.963 kb on - strand, within Xcc-8004.500.1at 459.106 kb on + strandat 459.106 kb on + strandat 459.106 kb on + strandat 459.106 kb on + strandat 459.106 kb on + strandat 459.106 kb on + strandat 459.107 kb on - strandat 459.107 kb on - strandat 459.107 kb on - strandat 459.107 kb on - strandat 459.107 kb on - strandat 459.107 kb on - strandat 459.107 kb on - strandat 459.107 kb on - strandat 459.107 kb on - strandat 459.107 kb on - strandat 459.107 kb on - strandat 459.382 kb on + strandat 459.382 kb on + strandat 459.382 kb on + strandat 459.382 kb on + strandat 459.382 kb on + strandat 459.383 kb on - strandat 459.383 kb on - strandat 459.383 kb on - strandat 459.386 kb on + strandat 459.484 kb on - strand, within Xcc-8004.501.1at 459.549 kb on + strand, within Xcc-8004.501.1at 459.549 kb on + strand, within Xcc-8004.501.1at 459.549 kb on + strand, within Xcc-8004.501.1at 459.550 kb on - strand, within Xcc-8004.501.1at 459.550 kb on - strand, within Xcc-8004.501.1at 459.716 kb on + strand, within Xcc-8004.501.1at 459.716 kb on + strand, within Xcc-8004.501.1at 459.716 kb on + strand, within Xcc-8004.501.1at 459.716 kb on + strand, within Xcc-8004.501.1at 459.716 kb on + strand, within Xcc-8004.501.1at 459.717 kb on - strand, within Xcc-8004.501.1at 459.717 kb on - strand, within Xcc-8004.501.1at 459.717 kb on - strand, within Xcc-8004.501.1at 459.755 kb on + strand, within Xcc-8004.501.1at 459.755 kb on + strand, within Xcc-8004.501.1at 459.755 kb on + strand, within Xcc-8004.501.1at 459.755 kb on + strand, within Xcc-8004.501.1at 459.756 kb on - strand, within Xcc-8004.501.1at 459.756 kb on - strand, within Xcc-8004.501.1at 459.756 kb on - strand, within Xcc-8004.501.1at 460.301 kb on + strand, within Xcc-8004.502.1at 460.536 kb on + strand, within Xcc-8004.502.1at 460.536 kb on + strand, within Xcc-8004.502.1at 460.537 kb on - strand, within Xcc-8004.502.1at 460.537 kb on - strand, within Xcc-8004.502.1at 460.537 kb on - strand, within Xcc-8004.502.1at 460.590 kb on - strand, within Xcc-8004.502.1at 460.689 kb on + strandat 460.690 kb on - strandat 460.690 kb on - strandat 460.690 kb on - strandat 460.690 kb on - strandat 460.701 kb on + strandat 460.732 kb on + strandat 460.732 kb on + strandat 460.733 kb on - strandat 460.733 kb on - strandat 460.733 kb on - strandat 460.733 kb on - strandat 460.733 kb on - strandat 460.733 kb on - strandat 460.733 kb on - strandat 460.908 kb on + strand, within Xcc-8004.503.1at 460.908 kb on + strand, within Xcc-8004.503.1at 460.908 kb on + strand, within Xcc-8004.503.1at 460.909 kb on - strand, within Xcc-8004.503.1at 460.909 kb on - strand, within Xcc-8004.503.1at 460.909 kb on - strand, within Xcc-8004.503.1at 460.909 kb on - strand, within Xcc-8004.503.1at 460.909 kb on - strand, within Xcc-8004.503.1at 460.909 kb on - strand, within Xcc-8004.503.1at 460.909 kb on - strand, within Xcc-8004.503.1at 461.037 kb on + strand, within Xcc-8004.503.1at 461.037 kb on + strand, within Xcc-8004.503.1at 461.037 kb on + strand, within Xcc-8004.503.1at 461.038 kb on - strand, within Xcc-8004.503.1at 461.038 kb on - strand, within Xcc-8004.503.1at 461.038 kb on - strand, within Xcc-8004.503.1at 461.038 kb on - strand, within Xcc-8004.503.1at 461.038 kb on - strand, within Xcc-8004.503.1at 461.038 kb on - strand, within Xcc-8004.503.1at 461.092 kb on + strandat 461.092 kb on + strandat 461.092 kb on + strandat 461.092 kb on + strandat 461.093 kb on - strandat 461.093 kb on - strandat 461.489 kb on + strand, within Xcc-8004.504.1at 461.489 kb on + strand, within Xcc-8004.504.1at 461.489 kb on + strand, within Xcc-8004.504.1at 461.489 kb on + strand, within Xcc-8004.504.1at 461.489 kb on + strand, within Xcc-8004.504.1at 461.489 kb on + strand, within Xcc-8004.504.1at 461.489 kb on + strand, within Xcc-8004.504.1at 461.489 kb on + strand, within Xcc-8004.504.1at 461.489 kb on + strand, within Xcc-8004.504.1at 461.490 kb on - strand, within Xcc-8004.504.1at 461.490 kb on - strand, within Xcc-8004.504.1at 461.490 kb on - strand, within Xcc-8004.504.1at 461.490 kb on - strand, within Xcc-8004.504.1at 461.495 kb on + strand, within Xcc-8004.504.1at 461.496 kb on - strand, within Xcc-8004.504.1at 461.558 kb on + strand, within Xcc-8004.504.1at 461.684 kb on + strand, within Xcc-8004.504.1at 461.685 kb on - strand, within Xcc-8004.504.1at 461.685 kb on - strand, within Xcc-8004.504.1at 461.685 kb on - strand, within Xcc-8004.504.1at 461.685 kb on - strand, within Xcc-8004.504.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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458,962 + Xcc-8004.500.1 0.77 +0.8
458,963 - Xcc-8004.500.1 0.77 -0.2
458,963 - Xcc-8004.500.1 0.77 +0.2
458,963 - Xcc-8004.500.1 0.77 -1.1
459,106 + -2.2
459,106 + -1.2
459,106 + -1.3
459,106 + +1.6
459,106 + -1.8
459,106 + -1.2
459,107 - -2.9
459,107 - -0.7
459,107 - +1.0
459,107 - +1.4
459,107 - -1.0
459,107 - -2.0
459,107 - +2.6
459,107 - +0.0
459,107 - -1.5
459,107 - -1.5
459,107 - -0.2
459,382 + -0.9
459,382 + -1.5
459,382 + +0.4
459,382 + +1.2
459,382 + +1.4
459,383 - -1.1
459,383 - -0.6
459,383 - +0.4
459,386 + -0.8
459,484 - Xcc-8004.501.1 0.11 +2.5
459,549 + Xcc-8004.501.1 0.25 +0.9
459,549 + Xcc-8004.501.1 0.25 -2.2
459,549 + Xcc-8004.501.1 0.25 +1.6
459,550 - Xcc-8004.501.1 0.25 +0.2
459,550 - Xcc-8004.501.1 0.25 -1.6
459,716 + Xcc-8004.501.1 0.59 +0.4
459,716 + Xcc-8004.501.1 0.59 +2.0
459,716 + Xcc-8004.501.1 0.59 +0.7
459,716 + Xcc-8004.501.1 0.59 -0.8
459,716 + Xcc-8004.501.1 0.59 -1.7
459,717 - Xcc-8004.501.1 0.59 +0.5
459,717 - Xcc-8004.501.1 0.59 -0.1
459,717 - Xcc-8004.501.1 0.59 -1.1
459,755 + Xcc-8004.501.1 0.67 +0.9
459,755 + Xcc-8004.501.1 0.67 +1.4
459,755 + Xcc-8004.501.1 0.67 +0.8
459,755 + Xcc-8004.501.1 0.67 -0.5
459,756 - Xcc-8004.501.1 0.67 -0.6
459,756 - Xcc-8004.501.1 0.67 +1.7
459,756 - Xcc-8004.501.1 0.67 -0.5
460,301 + Xcc-8004.502.1 0.48 -1.1
460,536 + Xcc-8004.502.1 0.79 -2.3
460,536 + Xcc-8004.502.1 0.79 -2.6
460,537 - Xcc-8004.502.1 0.79 +0.4
460,537 - Xcc-8004.502.1 0.79 -0.5
460,537 - Xcc-8004.502.1 0.79 -1.2
460,590 - Xcc-8004.502.1 0.86 -0.5
460,689 + +0.8
460,690 - +1.7
460,690 - +2.8
460,690 - +1.6
460,690 - +0.6
460,701 + -1.3
460,732 + -0.5
460,732 + -1.2
460,733 - -1.0
460,733 - +2.7
460,733 - +0.6
460,733 - -0.6
460,733 - -1.2
460,733 - -1.8
460,733 - -1.1
460,908 + Xcc-8004.503.1 0.49 +0.2
460,908 + Xcc-8004.503.1 0.49 -1.3
460,908 + Xcc-8004.503.1 0.49 +0.3
460,909 - Xcc-8004.503.1 0.50 +3.7
460,909 - Xcc-8004.503.1 0.50 +1.4
460,909 - Xcc-8004.503.1 0.50 -0.2
460,909 - Xcc-8004.503.1 0.50 -1.0
460,909 - Xcc-8004.503.1 0.50 -0.8
460,909 - Xcc-8004.503.1 0.50 +0.4
460,909 - Xcc-8004.503.1 0.50 -1.1
461,037 + Xcc-8004.503.1 0.85 +1.9
461,037 + Xcc-8004.503.1 0.85 +0.2
461,037 + Xcc-8004.503.1 0.85 -1.5
461,038 - Xcc-8004.503.1 0.85 +0.0
461,038 - Xcc-8004.503.1 0.85 +1.0
461,038 - Xcc-8004.503.1 0.85 -0.1
461,038 - Xcc-8004.503.1 0.85 -1.9
461,038 - Xcc-8004.503.1 0.85 -1.7
461,038 - Xcc-8004.503.1 0.85 -0.6
461,092 + +0.8
461,092 + +2.4
461,092 + +0.2
461,092 + -0.3
461,093 - -2.0
461,093 - +2.4
461,489 + Xcc-8004.504.1 0.33 -0.6
461,489 + Xcc-8004.504.1 0.33 +1.4
461,489 + Xcc-8004.504.1 0.33 +0.0
461,489 + Xcc-8004.504.1 0.33 -1.6
461,489 + Xcc-8004.504.1 0.33 -0.9
461,489 + Xcc-8004.504.1 0.33 -0.1
461,489 + Xcc-8004.504.1 0.33 -1.5
461,489 + Xcc-8004.504.1 0.33 +0.6
461,489 + Xcc-8004.504.1 0.33 +0.4
461,490 - Xcc-8004.504.1 0.33 -2.4
461,490 - Xcc-8004.504.1 0.33 -1.7
461,490 - Xcc-8004.504.1 0.33 -2.2
461,490 - Xcc-8004.504.1 0.33 -1.3
461,495 + Xcc-8004.504.1 0.33 -0.2
461,496 - Xcc-8004.504.1 0.33 -1.8
461,558 + Xcc-8004.504.1 0.38 -0.9
461,684 + Xcc-8004.504.1 0.49 -2.0
461,685 - Xcc-8004.504.1 0.49 -0.0
461,685 - Xcc-8004.504.1 0.49 -1.2
461,685 - Xcc-8004.504.1 0.49 -2.4
461,685 - Xcc-8004.504.1 0.49 +0.0

Or see this region's nucleotide sequence