Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4988.1 and Xcc-8004.4989.1 overlap by 4 nucleotides Xcc-8004.4989.1 and Xcc-8004.4992.1 are separated by 361 nucleotides Xcc-8004.4992.1 and Xcc-8004.4993.1 are separated by 290 nucleotides
Xcc-8004.4988.1: Xcc-8004.4988.1 - FIG01212472: hypothetical protein, at 4,733,653 to 4,734,570
Xcc-8004.4988.1
Xcc-8004.4989.1: Xcc-8004.4989.1 - FIG01212334: hypothetical protein, at 4,734,567 to 4,735,109
Xcc-8004.4989.1
Xcc-8004.4992.1: Xcc-8004.4992.1 - Thymidylate kinase (EC 2.7.4.9), at 4,735,471 to 4,736,127
Xcc-8004.4992.1
Xcc-8004.4993.1: Xcc-8004.4993.1 - hypothetical protein, at 4,736,418 to 4,737,371
Xcc-8004.4993.1
Position (kb) 4735
4736
4737 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 4734.662 kb on + strand, within Xcc-8004.4989.1 at 4734.690 kb on + strand, within Xcc-8004.4989.1 at 4734.691 kb on - strand, within Xcc-8004.4989.1 at 4734.705 kb on + strand, within Xcc-8004.4989.1 at 4734.705 kb on + strand, within Xcc-8004.4989.1 at 4734.705 kb on + strand, within Xcc-8004.4989.1 at 4734.705 kb on + strand, within Xcc-8004.4989.1 at 4734.705 kb on + strand, within Xcc-8004.4989.1 at 4734.705 kb on + strand, within Xcc-8004.4989.1 at 4734.705 kb on + strand, within Xcc-8004.4989.1 at 4734.705 kb on + strand, within Xcc-8004.4989.1 at 4734.705 kb on + strand, within Xcc-8004.4989.1 at 4734.705 kb on + strand, within Xcc-8004.4989.1 at 4734.706 kb on - strand, within Xcc-8004.4989.1 at 4734.706 kb on - strand, within Xcc-8004.4989.1 at 4734.706 kb on - strand, within Xcc-8004.4989.1 at 4734.726 kb on + strand, within Xcc-8004.4989.1 at 4734.726 kb on + strand, within Xcc-8004.4989.1 at 4734.726 kb on + strand, within Xcc-8004.4989.1 at 4734.726 kb on + strand, within Xcc-8004.4989.1 at 4734.727 kb on - strand, within Xcc-8004.4989.1 at 4734.727 kb on - strand, within Xcc-8004.4989.1 at 4734.727 kb on - strand, within Xcc-8004.4989.1 at 4734.727 kb on - strand, within Xcc-8004.4989.1 at 4734.768 kb on + strand, within Xcc-8004.4989.1 at 4734.768 kb on + strand, within Xcc-8004.4989.1 at 4734.769 kb on - strand, within Xcc-8004.4989.1 at 4734.789 kb on + strand, within Xcc-8004.4989.1 at 4734.789 kb on + strand, within Xcc-8004.4989.1 at 4734.790 kb on - strand, within Xcc-8004.4989.1 at 4734.790 kb on - strand, within Xcc-8004.4989.1 at 4734.911 kb on + strand, within Xcc-8004.4989.1 at 4734.911 kb on + strand, within Xcc-8004.4989.1 at 4734.911 kb on + strand, within Xcc-8004.4989.1 at 4734.912 kb on - strand, within Xcc-8004.4989.1 at 4734.912 kb on - strand, within Xcc-8004.4989.1 at 4734.912 kb on - strand, within Xcc-8004.4989.1 at 4735.083 kb on + strand at 4735.089 kb on + strand at 4735.089 kb on + strand at 4735.089 kb on + strand at 4735.089 kb on + strand at 4735.089 kb on + strand at 4735.089 kb on + strand at 4735.089 kb on + strand at 4735.090 kb on - strand at 4735.090 kb on - strand at 4735.090 kb on - strand at 4735.090 kb on - strand at 4735.210 kb on + strand at 4735.210 kb on + strand at 4735.210 kb on + strand at 4735.210 kb on + strand at 4735.210 kb on + strand at 4735.211 kb on - strand at 4735.211 kb on - strand at 4735.248 kb on + strand at 4735.249 kb on - strand at 4735.249 kb on - strand at 4735.249 kb on - strand at 4735.267 kb on + strand at 4735.267 kb on + strand at 4735.268 kb on - strand at 4735.268 kb on - strand at 4735.268 kb on - strand at 4735.300 kb on + strand at 4735.301 kb on - strand at 4735.301 kb on - strand at 4735.346 kb on + strand at 4735.346 kb on + strand at 4735.346 kb on + strand at 4735.346 kb on + strand at 4735.346 kb on + strand at 4735.346 kb on + strand at 4735.347 kb on - strand at 4735.347 kb on - strand at 4735.347 kb on - strand at 4735.347 kb on - strand at 4735.347 kb on - strand at 4735.347 kb on - strand at 4735.432 kb on + strand at 4735.432 kb on + strand at 4735.437 kb on + strand at 4735.437 kb on + strand at 4735.449 kb on + strand at 4736.105 kb on + strand at 4736.139 kb on + strand at 4736.139 kb on + strand at 4736.195 kb on + strand at 4736.195 kb on + strand at 4736.195 kb on + strand at 4736.195 kb on + strand at 4736.195 kb on + strand at 4736.196 kb on - strand at 4736.196 kb on - strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.200 kb on - strand at 4736.200 kb on - strand at 4736.200 kb on - strand at 4736.200 kb on - strand at 4736.200 kb on - strand at 4736.200 kb on - strand at 4736.306 kb on - strand at 4736.312 kb on + strand at 4736.312 kb on + strand at 4736.312 kb on + strand at 4736.312 kb on + strand at 4736.312 kb on + strand at 4736.312 kb on + strand at 4736.313 kb on - strand at 4736.313 kb on - strand at 4736.313 kb on - strand at 4736.675 kb on - strand, within Xcc-8004.4993.1 at 4737.055 kb on + strand, within Xcc-8004.4993.1 at 4737.055 kb on + strand, within Xcc-8004.4993.1 at 4737.055 kb on + strand, within Xcc-8004.4993.1 at 4737.055 kb on + strand, within Xcc-8004.4993.1 at 4737.055 kb on + strand, within Xcc-8004.4993.1 at 4737.055 kb on + strand, within Xcc-8004.4993.1 at 4737.055 kb on + strand, within Xcc-8004.4993.1 at 4737.055 kb on + strand, within Xcc-8004.4993.1 at 4737.056 kb on - strand, within Xcc-8004.4993.1 at 4737.056 kb on - strand, within Xcc-8004.4993.1 at 4737.056 kb on - strand, within Xcc-8004.4993.1 at 4737.056 kb on - strand, within Xcc-8004.4993.1 at 4737.056 kb on - strand, within Xcc-8004.4993.1 at 4737.056 kb on - strand, within Xcc-8004.4993.1 at 4737.056 kb on - strand, within Xcc-8004.4993.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 4,734,662 + Xcc-8004.4989.1 0.17 -0.1 4,734,690 + Xcc-8004.4989.1 0.23 -0.3 4,734,691 - Xcc-8004.4989.1 0.23 -0.0 4,734,705 + Xcc-8004.4989.1 0.25 -0.3 4,734,705 + Xcc-8004.4989.1 0.25 -0.3 4,734,705 + Xcc-8004.4989.1 0.25 -0.2 4,734,705 + Xcc-8004.4989.1 0.25 -0.8 4,734,705 + Xcc-8004.4989.1 0.25 -2.4 4,734,705 + Xcc-8004.4989.1 0.25 -0.7 4,734,705 + Xcc-8004.4989.1 0.25 -1.8 4,734,705 + Xcc-8004.4989.1 0.25 -1.1 4,734,705 + Xcc-8004.4989.1 0.25 +1.0 4,734,705 + Xcc-8004.4989.1 0.25 +0.8 4,734,706 - Xcc-8004.4989.1 0.26 +0.4 4,734,706 - Xcc-8004.4989.1 0.26 -2.3 4,734,706 - Xcc-8004.4989.1 0.26 -1.2 4,734,726 + Xcc-8004.4989.1 0.29 +3.9 4,734,726 + Xcc-8004.4989.1 0.29 -0.5 4,734,726 + Xcc-8004.4989.1 0.29 +0.0 4,734,726 + Xcc-8004.4989.1 0.29 +1.6 4,734,727 - Xcc-8004.4989.1 0.29 -1.1 4,734,727 - Xcc-8004.4989.1 0.29 -1.0 4,734,727 - Xcc-8004.4989.1 0.29 -0.2 4,734,727 - Xcc-8004.4989.1 0.29 +0.4 4,734,768 + Xcc-8004.4989.1 0.37 -1.8 4,734,768 + Xcc-8004.4989.1 0.37 +1.8 4,734,769 - Xcc-8004.4989.1 0.37 -2.5 4,734,789 + Xcc-8004.4989.1 0.41 +0.9 4,734,789 + Xcc-8004.4989.1 0.41 -1.0 4,734,790 - Xcc-8004.4989.1 0.41 -0.8 4,734,790 - Xcc-8004.4989.1 0.41 -1.7 4,734,911 + Xcc-8004.4989.1 0.63 -0.2 4,734,911 + Xcc-8004.4989.1 0.63 -1.1 4,734,911 + Xcc-8004.4989.1 0.63 +1.0 4,734,912 - Xcc-8004.4989.1 0.64 -1.6 4,734,912 - Xcc-8004.4989.1 0.64 -3.1 4,734,912 - Xcc-8004.4989.1 0.64 +1.4 4,735,083 + -0.2 4,735,089 + +1.8 4,735,089 + -0.2 4,735,089 + -0.5 4,735,089 + -1.6 4,735,089 + -2.0 4,735,089 + -0.2 4,735,089 + -0.6 4,735,090 - -2.3 4,735,090 - +0.9 4,735,090 - -2.2 4,735,090 - +0.0 4,735,210 + -0.7 4,735,210 + +1.4 4,735,210 + -0.9 4,735,210 + -1.6 4,735,210 + -0.3 4,735,211 - +1.8 4,735,211 - -1.6 4,735,248 + +2.4 4,735,249 - -1.2 4,735,249 - -0.2 4,735,249 - -1.1 4,735,267 + -0.3 4,735,267 + -1.6 4,735,268 - +1.5 4,735,268 - -2.3 4,735,268 - +0.6 4,735,300 + -0.8 4,735,301 - +0.4 4,735,301 - +0.0 4,735,346 + +1.5 4,735,346 + +0.7 4,735,346 + +0.2 4,735,346 + +4.5 4,735,346 + +0.4 4,735,346 + +0.1 4,735,347 - -0.7 4,735,347 - -0.6 4,735,347 - -0.1 4,735,347 - +1.2 4,735,347 - -1.7 4,735,347 - -1.2 4,735,432 + +1.0 4,735,432 + -1.3 4,735,437 + +1.4 4,735,437 + -1.0 4,735,449 + +1.4 4,736,105 + +0.4 4,736,139 + +0.5 4,736,139 + -2.7 4,736,195 + -1.2 4,736,195 + -2.6 4,736,195 + -2.6 4,736,195 + +0.0 4,736,195 + -0.6 4,736,196 - -1.3 4,736,196 - -0.2 4,736,199 + +1.9 4,736,199 + +0.9 4,736,199 + +1.3 4,736,199 + +0.1 4,736,199 + +1.7 4,736,199 + -1.6 4,736,199 + -2.2 4,736,199 + +0.8 4,736,199 + -2.0 4,736,199 + +1.9 4,736,199 + +1.1 4,736,199 + -1.3 4,736,200 - -0.3 4,736,200 - +0.1 4,736,200 - +1.1 4,736,200 - -0.5 4,736,200 - -0.5 4,736,200 - +0.2 4,736,306 - -1.7 4,736,312 + -2.3 4,736,312 + +0.3 4,736,312 + -2.5 4,736,312 + -1.6 4,736,312 + -1.6 4,736,312 + +0.8 4,736,313 - -2.5 4,736,313 - +1.0 4,736,313 - -0.2 4,736,675 - Xcc-8004.4993.1 0.27 -1.3 4,737,055 + Xcc-8004.4993.1 0.67 -1.9 4,737,055 + Xcc-8004.4993.1 0.67 -1.9 4,737,055 + Xcc-8004.4993.1 0.67 -3.1 4,737,055 + Xcc-8004.4993.1 0.67 -0.8 4,737,055 + Xcc-8004.4993.1 0.67 -2.7 4,737,055 + Xcc-8004.4993.1 0.67 +0.6 4,737,055 + Xcc-8004.4993.1 0.67 -0.2 4,737,055 + Xcc-8004.4993.1 0.67 -0.8 4,737,056 - Xcc-8004.4993.1 0.67 -2.0 4,737,056 - Xcc-8004.4993.1 0.67 +5.5 4,737,056 - Xcc-8004.4993.1 0.67 +0.2 4,737,056 - Xcc-8004.4993.1 0.67 +0.1 4,737,056 - Xcc-8004.4993.1 0.67 +0.6 4,737,056 - Xcc-8004.4993.1 0.67 +0.0 4,737,056 - Xcc-8004.4993.1 0.67 +0.3
Or see this region's nucleotide sequence