Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4985.1 and Xcc-8004.4986.1 are separated by 313 nucleotides Xcc-8004.4986.1 and Xcc-8004.4987.1 are separated by 82 nucleotides Xcc-8004.4987.1 and Xcc-8004.4988.1 are separated by 102 nucleotides
Xcc-8004.4985.1: Xcc-8004.4985.1 - Arginase (EC 3.5.3.1), at 4,731,410 to 4,732,333
Xcc-8004.4985.1
Xcc-8004.4986.1: Xcc-8004.4986.1 - FIG01209754: hypothetical protein, at 4,732,647 to 4,733,108
Xcc-8004.4986.1
Xcc-8004.4987.1: Xcc-8004.4987.1 - FIG01212434: hypothetical protein, at 4,733,191 to 4,733,550
Xcc-8004.4987.1
Xcc-8004.4988.1: Xcc-8004.4988.1 - FIG01212472: hypothetical protein, at 4,733,653 to 4,734,570
Xcc-8004.4988.1
Position (kb) 4733
4734 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4732.320 kb on + strand at 4732.320 kb on + strand at 4732.320 kb on + strand at 4732.320 kb on + strand at 4732.320 kb on + strand at 4732.320 kb on + strand at 4732.320 kb on + strand at 4732.321 kb on - strand at 4732.321 kb on - strand at 4732.321 kb on - strand at 4732.321 kb on - strand at 4732.321 kb on - strand at 4732.321 kb on - strand at 4732.367 kb on + strand at 4732.368 kb on - strand at 4732.368 kb on - strand at 4732.368 kb on - strand at 4732.387 kb on + strand at 4732.387 kb on + strand at 4732.388 kb on - strand at 4732.388 kb on - strand at 4732.462 kb on + strand at 4732.462 kb on + strand at 4732.462 kb on + strand at 4732.462 kb on + strand at 4732.462 kb on + strand at 4732.462 kb on + strand at 4732.462 kb on + strand at 4732.462 kb on + strand at 4732.462 kb on + strand at 4732.463 kb on - strand at 4732.463 kb on - strand at 4732.463 kb on - strand at 4732.463 kb on - strand at 4732.463 kb on - strand at 4732.463 kb on - strand at 4732.463 kb on - strand at 4732.463 kb on - strand at 4732.463 kb on - strand at 4732.463 kb on - strand at 4732.463 kb on - strand at 4732.463 kb on - strand at 4732.530 kb on + strand at 4732.530 kb on + strand at 4732.530 kb on + strand at 4732.531 kb on - strand at 4732.531 kb on - strand at 4732.531 kb on - strand at 4732.531 kb on - strand at 4732.531 kb on - strand at 4732.531 kb on - strand at 4732.563 kb on + strand at 4732.563 kb on + strand at 4732.563 kb on + strand at 4732.563 kb on + strand at 4732.563 kb on + strand at 4732.563 kb on + strand at 4732.563 kb on + strand at 4732.564 kb on - strand at 4732.564 kb on - strand at 4732.564 kb on - strand at 4732.564 kb on - strand at 4732.564 kb on - strand at 4732.564 kb on - strand at 4732.574 kb on + strand at 4732.574 kb on + strand at 4732.575 kb on - strand at 4732.575 kb on - strand at 4732.575 kb on - strand at 4732.575 kb on - strand at 4732.609 kb on + strand at 4732.609 kb on + strand at 4732.609 kb on + strand at 4732.610 kb on - strand at 4732.716 kb on + strand, within Xcc-8004.4986.1 at 4732.716 kb on + strand, within Xcc-8004.4986.1 at 4732.926 kb on + strand, within Xcc-8004.4986.1 at 4732.926 kb on + strand, within Xcc-8004.4986.1 at 4732.927 kb on - strand, within Xcc-8004.4986.1 at 4732.927 kb on - strand, within Xcc-8004.4986.1 at 4733.180 kb on - strand at 4733.180 kb on - strand at 4733.336 kb on + strand, within Xcc-8004.4987.1 at 4733.337 kb on - strand, within Xcc-8004.4987.1 at 4733.337 kb on - strand, within Xcc-8004.4987.1 at 4733.337 kb on - strand, within Xcc-8004.4987.1 at 4733.337 kb on - strand, within Xcc-8004.4987.1 at 4733.337 kb on - strand, within Xcc-8004.4987.1 at 4733.337 kb on - strand, within Xcc-8004.4987.1 at 4733.419 kb on + strand, within Xcc-8004.4987.1 at 4733.420 kb on - strand, within Xcc-8004.4987.1 at 4733.420 kb on - strand, within Xcc-8004.4987.1 at 4733.464 kb on + strand, within Xcc-8004.4987.1 at 4733.464 kb on + strand, within Xcc-8004.4987.1 at 4733.464 kb on + strand, within Xcc-8004.4987.1 at 4733.464 kb on + strand, within Xcc-8004.4987.1 at 4733.464 kb on + strand, within Xcc-8004.4987.1 at 4733.465 kb on - strand, within Xcc-8004.4987.1 at 4733.465 kb on - strand, within Xcc-8004.4987.1 at 4733.465 kb on - strand, within Xcc-8004.4987.1 at 4733.465 kb on - strand, within Xcc-8004.4987.1 at 4733.465 kb on - strand, within Xcc-8004.4987.1 at 4733.563 kb on + strand at 4733.564 kb on - strand at 4733.590 kb on + strand at 4733.590 kb on + strand at 4733.590 kb on + strand at 4733.590 kb on + strand at 4733.590 kb on + strand at 4733.590 kb on + strand at 4733.591 kb on - strand at 4733.948 kb on + strand, within Xcc-8004.4988.1 at 4733.948 kb on + strand, within Xcc-8004.4988.1 at 4733.948 kb on + strand, within Xcc-8004.4988.1 at 4733.948 kb on + strand, within Xcc-8004.4988.1 at 4733.948 kb on + strand, within Xcc-8004.4988.1 at 4733.948 kb on + strand, within Xcc-8004.4988.1 at 4733.948 kb on + strand, within Xcc-8004.4988.1 at 4733.948 kb on + strand, within Xcc-8004.4988.1 at 4733.948 kb on + strand, within Xcc-8004.4988.1 at 4733.949 kb on - strand, within Xcc-8004.4988.1 at 4733.949 kb on - strand, within Xcc-8004.4988.1 at 4733.949 kb on - strand, within Xcc-8004.4988.1 at 4733.949 kb on - strand, within Xcc-8004.4988.1 at 4733.949 kb on - strand, within Xcc-8004.4988.1 at 4733.949 kb on - strand, within Xcc-8004.4988.1 at 4733.949 kb on - strand, within Xcc-8004.4988.1 at 4733.949 kb on - strand, within Xcc-8004.4988.1 at 4734.174 kb on + strand, within Xcc-8004.4988.1 at 4734.217 kb on + strand, within Xcc-8004.4988.1 at 4734.217 kb on + strand, within Xcc-8004.4988.1 at 4734.217 kb on + strand, within Xcc-8004.4988.1 at 4734.218 kb on - strand, within Xcc-8004.4988.1 at 4734.218 kb on - strand, within Xcc-8004.4988.1 at 4734.218 kb on - strand, within Xcc-8004.4988.1 at 4734.313 kb on - strand, within Xcc-8004.4988.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 4,732,320 + +1.4 4,732,320 + +0.6 4,732,320 + +0.1 4,732,320 + +0.0 4,732,320 + -0.5 4,732,320 + +0.8 4,732,320 + +1.3 4,732,321 - -1.2 4,732,321 - +0.0 4,732,321 - -1.1 4,732,321 - -1.0 4,732,321 - +1.2 4,732,321 - +2.4 4,732,367 + +0.9 4,732,368 - -2.2 4,732,368 - -0.8 4,732,368 - -0.7 4,732,387 + +1.5 4,732,387 + +1.8 4,732,388 - +0.2 4,732,388 - -1.5 4,732,462 + +2.4 4,732,462 + -0.0 4,732,462 + -1.6 4,732,462 + -0.8 4,732,462 + -0.6 4,732,462 + -3.4 4,732,462 + -0.4 4,732,462 + -2.5 4,732,462 + -0.1 4,732,463 - -0.4 4,732,463 - +0.8 4,732,463 - +0.4 4,732,463 - -1.1 4,732,463 - +0.5 4,732,463 - -2.8 4,732,463 - -0.3 4,732,463 - +0.3 4,732,463 - -0.5 4,732,463 - +1.4 4,732,463 - -0.4 4,732,463 - +1.4 4,732,530 + -1.8 4,732,530 + -0.0 4,732,530 + -0.6 4,732,531 - -0.2 4,732,531 - +0.7 4,732,531 - +1.5 4,732,531 - +0.8 4,732,531 - -0.1 4,732,531 - +1.2 4,732,563 + -0.8 4,732,563 + +0.4 4,732,563 + -1.6 4,732,563 + -0.1 4,732,563 + -1.6 4,732,563 + +1.4 4,732,563 + -2.1 4,732,564 - +1.8 4,732,564 - -0.6 4,732,564 - -1.1 4,732,564 - +1.4 4,732,564 - +0.7 4,732,564 - -0.8 4,732,574 + +0.5 4,732,574 + -2.4 4,732,575 - +0.1 4,732,575 - +1.2 4,732,575 - +0.5 4,732,575 - -0.2 4,732,609 + +2.1 4,732,609 + +3.2 4,732,609 + +0.4 4,732,610 - -1.9 4,732,716 + Xcc-8004.4986.1 0.15 +0.0 4,732,716 + Xcc-8004.4986.1 0.15 +1.4 4,732,926 + Xcc-8004.4986.1 0.60 -1.2 4,732,926 + Xcc-8004.4986.1 0.60 +0.1 4,732,927 - Xcc-8004.4986.1 0.61 -2.4 4,732,927 - Xcc-8004.4986.1 0.61 +0.4 4,733,180 - -1.2 4,733,180 - +2.4 4,733,336 + Xcc-8004.4987.1 0.40 -1.3 4,733,337 - Xcc-8004.4987.1 0.41 +3.1 4,733,337 - Xcc-8004.4987.1 0.41 +1.0 4,733,337 - Xcc-8004.4987.1 0.41 -1.1 4,733,337 - Xcc-8004.4987.1 0.41 -2.4 4,733,337 - Xcc-8004.4987.1 0.41 -1.2 4,733,337 - Xcc-8004.4987.1 0.41 +1.4 4,733,419 + Xcc-8004.4987.1 0.63 -2.6 4,733,420 - Xcc-8004.4987.1 0.64 -2.4 4,733,420 - Xcc-8004.4987.1 0.64 +0.3 4,733,464 + Xcc-8004.4987.1 0.76 -0.8 4,733,464 + Xcc-8004.4987.1 0.76 -2.6 4,733,464 + Xcc-8004.4987.1 0.76 +2.4 4,733,464 + Xcc-8004.4987.1 0.76 -0.6 4,733,464 + Xcc-8004.4987.1 0.76 -1.3 4,733,465 - Xcc-8004.4987.1 0.76 -3.9 4,733,465 - Xcc-8004.4987.1 0.76 +0.3 4,733,465 - Xcc-8004.4987.1 0.76 -1.6 4,733,465 - Xcc-8004.4987.1 0.76 -0.8 4,733,465 - Xcc-8004.4987.1 0.76 -2.7 4,733,563 + +1.9 4,733,564 - +1.1 4,733,590 + -0.1 4,733,590 + -0.6 4,733,590 + -1.6 4,733,590 + -0.7 4,733,590 + +1.5 4,733,590 + -1.2 4,733,591 - -0.5 4,733,948 + Xcc-8004.4988.1 0.32 +0.1 4,733,948 + Xcc-8004.4988.1 0.32 -2.6 4,733,948 + Xcc-8004.4988.1 0.32 +0.7 4,733,948 + Xcc-8004.4988.1 0.32 +0.4 4,733,948 + Xcc-8004.4988.1 0.32 +1.1 4,733,948 + Xcc-8004.4988.1 0.32 -1.0 4,733,948 + Xcc-8004.4988.1 0.32 -0.6 4,733,948 + Xcc-8004.4988.1 0.32 +2.4 4,733,948 + Xcc-8004.4988.1 0.32 -0.6 4,733,949 - Xcc-8004.4988.1 0.32 -0.9 4,733,949 - Xcc-8004.4988.1 0.32 +0.4 4,733,949 - Xcc-8004.4988.1 0.32 -0.5 4,733,949 - Xcc-8004.4988.1 0.32 +1.7 4,733,949 - Xcc-8004.4988.1 0.32 -1.3 4,733,949 - Xcc-8004.4988.1 0.32 -1.9 4,733,949 - Xcc-8004.4988.1 0.32 +1.1 4,733,949 - Xcc-8004.4988.1 0.32 +2.4 4,734,174 + Xcc-8004.4988.1 0.57 -2.7 4,734,217 + Xcc-8004.4988.1 0.61 +0.4 4,734,217 + Xcc-8004.4988.1 0.61 +1.5 4,734,217 + Xcc-8004.4988.1 0.61 -1.1 4,734,218 - Xcc-8004.4988.1 0.62 +0.0 4,734,218 - Xcc-8004.4988.1 0.62 -0.2 4,734,218 - Xcc-8004.4988.1 0.62 -1.3 4,734,313 - Xcc-8004.4988.1 0.72 -0.0
Or see this region's nucleotide sequence