Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.47.1 and Xcc-8004.48.1 are separated by 924 nucleotides Xcc-8004.48.1 and Xcc-8004.49.1 are separated by 413 nucleotides
Xcc-8004.47.1: Xcc-8004.47.1 - Phospholipid N-methyltransferase, at 46,187 to 46,765
Xcc-8004.47.1
Xcc-8004.48.1: Xcc-8004.48.1 - FIG01212903: hypothetical protein, at 47,690 to 48,160
Xcc-8004.48.1
Xcc-8004.49.1: Xcc-8004.49.1 - Pirin-related protein, at 48,574 to 49,464
Xcc-8004.49.1
Position (kb) 47
48
49 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 46.753 kb on - strand at 46.753 kb on - strand at 46.753 kb on - strand at 46.753 kb on - strand at 46.753 kb on - strand at 46.811 kb on + strand at 46.811 kb on + strand at 46.812 kb on - strand at 46.812 kb on - strand at 46.812 kb on - strand at 46.974 kb on + strand at 46.974 kb on + strand at 46.974 kb on + strand at 46.974 kb on + strand at 46.975 kb on - strand at 47.140 kb on + strand at 47.140 kb on + strand at 47.140 kb on + strand at 47.140 kb on + strand at 47.140 kb on + strand at 47.141 kb on - strand at 47.141 kb on - strand at 47.141 kb on - strand at 47.141 kb on - strand at 47.189 kb on + strand at 47.190 kb on - strand at 47.190 kb on - strand at 47.190 kb on - strand at 47.190 kb on - strand at 47.483 kb on + strand at 47.483 kb on + strand at 47.565 kb on + strand at 47.565 kb on + strand at 47.565 kb on + strand at 47.565 kb on + strand at 47.565 kb on + strand at 47.565 kb on + strand at 47.566 kb on - strand at 47.566 kb on - strand at 47.623 kb on + strand at 47.623 kb on + strand at 47.623 kb on + strand at 47.623 kb on + strand at 47.623 kb on + strand at 47.623 kb on + strand at 47.623 kb on + strand at 47.623 kb on + strand at 47.624 kb on - strand at 47.624 kb on - strand at 47.624 kb on - strand at 47.624 kb on - strand at 47.624 kb on - strand at 47.624 kb on - strand at 47.700 kb on + strand at 47.700 kb on + strand at 47.700 kb on + strand at 47.700 kb on + strand at 47.700 kb on + strand at 47.700 kb on + strand at 47.701 kb on - strand at 47.701 kb on - strand at 47.701 kb on - strand at 47.701 kb on - strand at 47.701 kb on - strand at 47.701 kb on - strand at 47.701 kb on - strand at 47.701 kb on - strand at 47.912 kb on + strand, within Xcc-8004.48.1 at 47.912 kb on + strand, within Xcc-8004.48.1 at 47.912 kb on + strand, within Xcc-8004.48.1 at 47.912 kb on + strand, within Xcc-8004.48.1 at 48.121 kb on - strand at 48.121 kb on - strand at 48.121 kb on - strand at 48.214 kb on + strand at 48.214 kb on + strand at 48.215 kb on - strand at 48.215 kb on - strand at 48.264 kb on + strand at 48.264 kb on + strand at 48.264 kb on + strand at 48.264 kb on + strand at 48.264 kb on + strand at 48.265 kb on - strand at 48.265 kb on - strand at 48.265 kb on - strand at 48.265 kb on - strand at 48.265 kb on - strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.267 kb on - strand at 48.267 kb on - strand at 48.267 kb on - strand at 48.267 kb on - strand at 48.267 kb on - strand at 48.267 kb on - strand at 48.267 kb on - strand at 48.267 kb on - strand at 48.267 kb on - strand at 48.267 kb on - strand at 48.267 kb on - strand at 48.267 kb on - strand at 48.267 kb on - strand at 48.267 kb on - strand at 48.267 kb on - strand at 48.267 kb on - strand at 48.267 kb on - strand at 48.267 kb on - strand at 48.267 kb on - strand at 48.267 kb on - strand at 48.267 kb on - strand at 48.311 kb on + strand at 48.311 kb on + strand at 48.311 kb on + strand at 48.339 kb on - strand at 48.343 kb on + strand at 48.343 kb on + strand at 48.359 kb on + strand at 48.359 kb on + strand at 48.359 kb on + strand at 48.360 kb on - strand at 48.360 kb on - strand at 48.360 kb on - strand at 48.364 kb on + strand at 48.364 kb on + strand at 48.364 kb on + strand at 48.364 kb on + strand at 48.364 kb on + strand at 48.364 kb on + strand at 48.364 kb on + strand at 48.364 kb on + strand at 48.364 kb on + strand at 48.365 kb on - strand at 48.365 kb on - strand at 48.365 kb on - strand at 48.365 kb on - strand at 48.365 kb on - strand at 48.365 kb on - strand at 48.365 kb on - strand at 48.365 kb on - strand at 48.365 kb on - strand at 48.365 kb on - strand at 48.365 kb on - strand at 48.365 kb on - strand at 48.365 kb on - strand at 48.365 kb on - strand at 48.365 kb on - strand at 48.365 kb on - strand at 48.407 kb on + strand at 48.408 kb on - strand at 48.408 kb on - strand at 48.456 kb on + strand at 48.457 kb on - strand at 48.465 kb on + strand at 48.465 kb on + strand at 48.466 kb on - strand at 48.466 kb on - strand at 48.496 kb on + strand at 48.496 kb on + strand at 48.496 kb on + strand at 48.496 kb on + strand at 48.496 kb on + strand at 48.496 kb on + strand at 48.497 kb on - strand at 48.497 kb on - strand at 48.519 kb on + strand at 48.520 kb on - strand at 48.520 kb on - strand at 48.669 kb on + strand, within Xcc-8004.49.1 at 48.832 kb on + strand, within Xcc-8004.49.1 at 48.832 kb on + strand, within Xcc-8004.49.1 at 48.832 kb on + strand, within Xcc-8004.49.1 at 48.833 kb on - strand, within Xcc-8004.49.1 at 48.833 kb on - strand, within Xcc-8004.49.1 at 48.833 kb on - strand, within Xcc-8004.49.1 at 49.030 kb on + strand, within Xcc-8004.49.1 at 49.030 kb on + strand, within Xcc-8004.49.1 at 49.030 kb on + strand, within Xcc-8004.49.1 at 49.030 kb on + strand, within Xcc-8004.49.1 at 49.030 kb on + strand, within Xcc-8004.49.1 at 49.031 kb on - strand, within Xcc-8004.49.1 at 49.031 kb on - strand, within Xcc-8004.49.1 at 49.031 kb on - strand, within Xcc-8004.49.1 at 49.031 kb on - strand, within Xcc-8004.49.1 at 49.031 kb on - strand, within Xcc-8004.49.1 at 49.031 kb on - strand, within Xcc-8004.49.1 at 49.031 kb on - strand, within Xcc-8004.49.1 at 49.031 kb on - strand, within Xcc-8004.49.1 at 49.031 kb on - strand, within Xcc-8004.49.1 at 49.031 kb on - strand, within Xcc-8004.49.1 at 49.031 kb on - strand, within Xcc-8004.49.1 at 49.087 kb on + strand, within Xcc-8004.49.1 at 49.088 kb on - strand, within Xcc-8004.49.1 at 49.132 kb on + strand, within Xcc-8004.49.1 at 49.132 kb on + strand, within Xcc-8004.49.1 at 49.132 kb on + strand, within Xcc-8004.49.1 at 49.132 kb on + strand, within Xcc-8004.49.1 at 49.133 kb on - strand, within Xcc-8004.49.1 at 49.133 kb on - strand, within Xcc-8004.49.1 at 49.133 kb on - strand, within Xcc-8004.49.1 at 49.133 kb on - strand, within Xcc-8004.49.1 at 49.133 kb on - strand, within Xcc-8004.49.1 at 49.133 kb on - strand, within Xcc-8004.49.1 at 49.133 kb on - strand, within Xcc-8004.49.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 46,753 - +1.5 46,753 - +1.3 46,753 - -1.2 46,753 - +0.4 46,753 - +0.8 46,811 + +1.2 46,811 + -0.9 46,812 - +1.2 46,812 - +2.3 46,812 - -0.4 46,974 + -3.1 46,974 + +0.8 46,974 + -2.1 46,974 + +0.7 46,975 - -1.3 47,140 + -0.8 47,140 + -1.9 47,140 + -0.2 47,140 + -1.0 47,140 + -0.5 47,141 - +0.1 47,141 - +1.4 47,141 - -3.1 47,141 - -1.1 47,189 + +1.2 47,190 - -1.8 47,190 - -2.3 47,190 - -1.0 47,190 - +1.6 47,483 + +0.8 47,483 + +3.1 47,565 + -0.5 47,565 + +1.4 47,565 + +0.2 47,565 + +1.2 47,565 + -1.8 47,565 + -2.1 47,566 - -2.3 47,566 - -1.3 47,623 + +1.1 47,623 + -2.2 47,623 + -1.9 47,623 + -2.4 47,623 + +3.2 47,623 + +0.1 47,623 + -0.3 47,623 + +2.9 47,624 - +0.5 47,624 - +2.4 47,624 - +0.4 47,624 - +0.6 47,624 - -0.5 47,624 - +0.5 47,700 + +2.3 47,700 + +0.8 47,700 + -1.7 47,700 + -0.8 47,700 + +0.1 47,700 + +1.6 47,701 - -1.7 47,701 - -0.0 47,701 - +0.2 47,701 - +3.8 47,701 - -1.6 47,701 - +0.6 47,701 - -1.5 47,701 - -2.0 47,912 + Xcc-8004.48.1 0.47 -0.8 47,912 + Xcc-8004.48.1 0.47 -1.5 47,912 + Xcc-8004.48.1 0.47 -0.4 47,912 + Xcc-8004.48.1 0.47 -2.1 48,121 - +3.2 48,121 - -1.5 48,121 - -0.3 48,214 + -0.6 48,214 + +0.2 48,215 - +2.4 48,215 - +0.3 48,264 + +0.1 48,264 + -0.4 48,264 + +1.4 48,264 + +1.3 48,264 + -2.0 48,265 - +1.1 48,265 - -0.6 48,265 - -1.0 48,265 - -1.8 48,265 - +0.5 48,266 + +3.2 48,266 + -2.4 48,266 + -0.0 48,266 + -0.7 48,266 + +2.8 48,266 + -0.5 48,266 + -0.1 48,266 + +2.4 48,266 + -0.8 48,266 + -0.7 48,266 + -4.2 48,266 + -2.5 48,266 + +0.8 48,266 + +0.9 48,266 + +0.8 48,266 + -2.0 48,266 + +0.1 48,266 + -0.3 48,266 + +0.3 48,266 + -0.9 48,266 + -1.1 48,266 + -0.1 48,267 - -2.5 48,267 - -2.2 48,267 - +0.8 48,267 - +0.4 48,267 - +0.6 48,267 - -2.5 48,267 - -0.4 48,267 - -0.3 48,267 - -0.2 48,267 - -0.2 48,267 - +0.1 48,267 - -1.7 48,267 - -2.4 48,267 - -1.0 48,267 - -2.2 48,267 - +1.5 48,267 - +0.9 48,267 - +1.5 48,267 - -0.3 48,267 - -0.6 48,267 - +1.2 48,311 + +1.7 48,311 + -2.0 48,311 + -1.2 48,339 - -0.2 48,343 + -1.2 48,343 + +0.5 48,359 + -0.0 48,359 + -2.0 48,359 + -0.2 48,360 - +1.2 48,360 - +0.3 48,360 - -0.2 48,364 + +1.5 48,364 + -2.2 48,364 + +0.1 48,364 + -0.3 48,364 + +0.2 48,364 + +1.7 48,364 + -1.2 48,364 + +0.5 48,364 + +0.7 48,365 - -1.8 48,365 - +1.0 48,365 - -2.0 48,365 - -0.8 48,365 - +0.6 48,365 - -1.5 48,365 - +0.5 48,365 - -3.2 48,365 - +0.4 48,365 - -1.0 48,365 - -0.1 48,365 - -1.3 48,365 - +1.3 48,365 - -0.0 48,365 - +1.0 48,365 - +2.1 48,407 + -0.2 48,408 - +0.9 48,408 - -2.1 48,456 + +0.5 48,457 - -0.1 48,465 + -2.3 48,465 + +0.3 48,466 - -2.3 48,466 - +1.9 48,496 + -0.6 48,496 + -2.0 48,496 + +2.0 48,496 + -0.4 48,496 + +0.7 48,496 + -2.2 48,497 - -2.3 48,497 - -0.2 48,519 + +0.4 48,520 - -1.5 48,520 - +1.3 48,669 + Xcc-8004.49.1 0.11 -2.4 48,832 + Xcc-8004.49.1 0.29 -0.2 48,832 + Xcc-8004.49.1 0.29 -1.3 48,832 + Xcc-8004.49.1 0.29 -1.8 48,833 - Xcc-8004.49.1 0.29 +0.5 48,833 - Xcc-8004.49.1 0.29 -0.4 48,833 - Xcc-8004.49.1 0.29 +0.4 49,030 + Xcc-8004.49.1 0.51 -1.9 49,030 + Xcc-8004.49.1 0.51 -0.2 49,030 + Xcc-8004.49.1 0.51 -1.5 49,030 + Xcc-8004.49.1 0.51 -0.4 49,030 + Xcc-8004.49.1 0.51 +0.7 49,031 - Xcc-8004.49.1 0.51 -0.9 49,031 - Xcc-8004.49.1 0.51 +0.3 49,031 - Xcc-8004.49.1 0.51 -0.0 49,031 - Xcc-8004.49.1 0.51 +0.3 49,031 - Xcc-8004.49.1 0.51 +1.1 49,031 - Xcc-8004.49.1 0.51 -3.1 49,031 - Xcc-8004.49.1 0.51 +0.2 49,031 - Xcc-8004.49.1 0.51 +1.3 49,031 - Xcc-8004.49.1 0.51 +2.0 49,031 - Xcc-8004.49.1 0.51 -0.7 49,031 - Xcc-8004.49.1 0.51 -0.9 49,087 + Xcc-8004.49.1 0.58 -1.2 49,088 - Xcc-8004.49.1 0.58 -0.4 49,132 + Xcc-8004.49.1 0.63 -1.4 49,132 + Xcc-8004.49.1 0.63 +0.2 49,132 + Xcc-8004.49.1 0.63 -1.3 49,132 + Xcc-8004.49.1 0.63 -0.9 49,133 - Xcc-8004.49.1 0.63 -0.6 49,133 - Xcc-8004.49.1 0.63 -1.2 49,133 - Xcc-8004.49.1 0.63 +1.2 49,133 - Xcc-8004.49.1 0.63 +0.8 49,133 - Xcc-8004.49.1 0.63 +1.0 49,133 - Xcc-8004.49.1 0.63 -1.2 49,133 - Xcc-8004.49.1 0.63 -1.9
Or see this region's nucleotide sequence