Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4709.1 and Xcc-8004.4710.1 are separated by 168 nucleotides Xcc-8004.4710.1 and Xcc-8004.4711.1 overlap by 4 nucleotides Xcc-8004.4711.1 and Xcc-8004.4712.1 overlap by 4 nucleotides
Xcc-8004.4709.1: Xcc-8004.4709.1 - Short-chain dehydrogenase/reductase SDR, at 4,487,133 to 4,488,035
Xcc-8004.4709.1
Xcc-8004.4710.1: Xcc-8004.4710.1 - FIG01211889: hypothetical protein, at 4,488,204 to 4,488,593
Xcc-8004.4710.1
Xcc-8004.4711.1: Xcc-8004.4711.1 - FIG01211524: hypothetical protein, at 4,488,590 to 4,489,156
Xcc-8004.4711.1
Xcc-8004.4712.1: Xcc-8004.4712.1 - Oxidoreductase, at 4,489,153 to 4,490,223
Xcc-8004.4712.1
Position (kb) 4488
4489
4490 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 4487.620 kb on + strand, within Xcc-8004.4709.1 at 4487.620 kb on + strand, within Xcc-8004.4709.1 at 4487.621 kb on - strand, within Xcc-8004.4709.1 at 4487.621 kb on - strand, within Xcc-8004.4709.1 at 4487.752 kb on + strand, within Xcc-8004.4709.1 at 4487.752 kb on + strand, within Xcc-8004.4709.1 at 4487.752 kb on + strand, within Xcc-8004.4709.1 at 4487.752 kb on + strand, within Xcc-8004.4709.1 at 4487.753 kb on - strand, within Xcc-8004.4709.1 at 4487.753 kb on - strand, within Xcc-8004.4709.1 at 4487.753 kb on - strand, within Xcc-8004.4709.1 at 4487.753 kb on - strand, within Xcc-8004.4709.1 at 4487.890 kb on + strand, within Xcc-8004.4709.1 at 4487.890 kb on + strand, within Xcc-8004.4709.1 at 4487.890 kb on + strand, within Xcc-8004.4709.1 at 4487.950 kb on + strand at 4487.960 kb on - strand at 4488.340 kb on + strand, within Xcc-8004.4710.1 at 4488.340 kb on + strand, within Xcc-8004.4710.1 at 4488.390 kb on + strand, within Xcc-8004.4710.1 at 4488.391 kb on - strand, within Xcc-8004.4710.1 at 4488.391 kb on - strand, within Xcc-8004.4710.1 at 4488.391 kb on - strand, within Xcc-8004.4710.1 at 4488.437 kb on - strand, within Xcc-8004.4710.1 at 4488.437 kb on - strand, within Xcc-8004.4710.1 at 4488.437 kb on - strand, within Xcc-8004.4710.1 at 4488.437 kb on - strand, within Xcc-8004.4710.1 at 4488.715 kb on - strand, within Xcc-8004.4711.1 at 4489.143 kb on - strand at 4489.545 kb on - strand, within Xcc-8004.4712.1 at 4490.075 kb on + strand, within Xcc-8004.4712.1 at 4490.075 kb on + strand, within Xcc-8004.4712.1 at 4490.075 kb on + strand, within Xcc-8004.4712.1 at 4490.075 kb on + strand, within Xcc-8004.4712.1 at 4490.075 kb on + strand, within Xcc-8004.4712.1 at 4490.075 kb on + strand, within Xcc-8004.4712.1 at 4490.075 kb on + strand, within Xcc-8004.4712.1 at 4490.076 kb on - strand, within Xcc-8004.4712.1 at 4490.076 kb on - strand, within Xcc-8004.4712.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 4,487,620 + Xcc-8004.4709.1 0.54 +0.5 4,487,620 + Xcc-8004.4709.1 0.54 +1.3 4,487,621 - Xcc-8004.4709.1 0.54 +1.6 4,487,621 - Xcc-8004.4709.1 0.54 +2.4 4,487,752 + Xcc-8004.4709.1 0.69 +3.0 4,487,752 + Xcc-8004.4709.1 0.69 +2.4 4,487,752 + Xcc-8004.4709.1 0.69 +1.2 4,487,752 + Xcc-8004.4709.1 0.69 -0.2 4,487,753 - Xcc-8004.4709.1 0.69 +0.5 4,487,753 - Xcc-8004.4709.1 0.69 -1.9 4,487,753 - Xcc-8004.4709.1 0.69 +0.4 4,487,753 - Xcc-8004.4709.1 0.69 +0.3 4,487,890 + Xcc-8004.4709.1 0.84 -1.4 4,487,890 + Xcc-8004.4709.1 0.84 -1.2 4,487,890 + Xcc-8004.4709.1 0.84 +0.1 4,487,950 + +0.6 4,487,960 - +0.4 4,488,340 + Xcc-8004.4710.1 0.35 -0.8 4,488,340 + Xcc-8004.4710.1 0.35 -0.9 4,488,390 + Xcc-8004.4710.1 0.48 -0.2 4,488,391 - Xcc-8004.4710.1 0.48 +0.8 4,488,391 - Xcc-8004.4710.1 0.48 +1.4 4,488,391 - Xcc-8004.4710.1 0.48 +1.2 4,488,437 - Xcc-8004.4710.1 0.60 +0.1 4,488,437 - Xcc-8004.4710.1 0.60 -0.8 4,488,437 - Xcc-8004.4710.1 0.60 +2.4 4,488,437 - Xcc-8004.4710.1 0.60 -1.1 4,488,715 - Xcc-8004.4711.1 0.22 +0.3 4,489,143 - -0.9 4,489,545 - Xcc-8004.4712.1 0.37 -0.6 4,490,075 + Xcc-8004.4712.1 0.86 -0.2 4,490,075 + Xcc-8004.4712.1 0.86 -1.2 4,490,075 + Xcc-8004.4712.1 0.86 +0.8 4,490,075 + Xcc-8004.4712.1 0.86 +0.3 4,490,075 + Xcc-8004.4712.1 0.86 +3.8 4,490,075 + Xcc-8004.4712.1 0.86 -0.5 4,490,075 + Xcc-8004.4712.1 0.86 -1.5 4,490,076 - Xcc-8004.4712.1 0.86 -3.9 4,490,076 - Xcc-8004.4712.1 0.86 +0.7
Or see this region's nucleotide sequence