Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4675.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4674.1 and Xcc-8004.4675.1 are separated by 82 nucleotidesXcc-8004.4675.1 and Xcc-8004.4676.1 are separated by 101 nucleotidesXcc-8004.4676.1 and Xcc-8004.4677.1 are separated by 72 nucleotides Xcc-8004.4674.1: Xcc-8004.4674.1 - putative Cytochrome bd2, subunit II, at 4,453,432 to 4,454,451 Xcc-8004.4674.1 Xcc-8004.4675.1: Xcc-8004.4675.1 - FIG01211280: hypothetical protein, at 4,454,534 to 4,454,719 Xcc-8004.4675.1 Xcc-8004.4676.1: Xcc-8004.4676.1 - FIG01210888: hypothetical protein, at 4,454,821 to 4,455,600 Xcc-8004.4676.1 Xcc-8004.4677.1: Xcc-8004.4677.1 - Oxidoreductase, at 4,455,673 to 4,456,539 Xcc-8004.4677.1 Position (kb) 4454 4455Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4453.663 kb on + strand, within Xcc-8004.4674.1at 4453.664 kb on - strand, within Xcc-8004.4674.1at 4453.664 kb on - strand, within Xcc-8004.4674.1at 4453.687 kb on + strand, within Xcc-8004.4674.1at 4453.687 kb on + strand, within Xcc-8004.4674.1at 4453.687 kb on + strand, within Xcc-8004.4674.1at 4453.688 kb on - strand, within Xcc-8004.4674.1at 4453.688 kb on - strand, within Xcc-8004.4674.1at 4453.688 kb on - strand, within Xcc-8004.4674.1at 4453.692 kb on - strand, within Xcc-8004.4674.1at 4453.876 kb on + strand, within Xcc-8004.4674.1at 4453.876 kb on + strand, within Xcc-8004.4674.1at 4454.190 kb on + strand, within Xcc-8004.4674.1at 4454.190 kb on + strand, within Xcc-8004.4674.1at 4454.190 kb on + strand, within Xcc-8004.4674.1at 4454.279 kb on - strand, within Xcc-8004.4674.1at 4454.296 kb on + strand, within Xcc-8004.4674.1at 4454.297 kb on - strand, within Xcc-8004.4674.1at 4454.384 kb on - strandat 4454.384 kb on - strandat 4454.385 kb on + strandat 4454.438 kb on - strandat 4454.513 kb on - strandat 4454.513 kb on - strandat 4454.513 kb on - strandat 4454.565 kb on + strand, within Xcc-8004.4675.1at 4454.565 kb on + strand, within Xcc-8004.4675.1at 4454.719 kb on + strandat 4454.720 kb on - strandat 4454.720 kb on - strandat 4454.802 kb on + strandat 4454.803 kb on - strandat 4455.110 kb on + strand, within Xcc-8004.4676.1at 4455.110 kb on + strand, within Xcc-8004.4676.1at 4455.248 kb on + strand, within Xcc-8004.4676.1at 4455.248 kb on + strand, within Xcc-8004.4676.1at 4455.248 kb on + strand, within Xcc-8004.4676.1at 4455.248 kb on + strand, within Xcc-8004.4676.1at 4455.248 kb on + strand, within Xcc-8004.4676.1at 4455.248 kb on + strand, within Xcc-8004.4676.1at 4455.248 kb on + strand, within Xcc-8004.4676.1at 4455.248 kb on + strand, within Xcc-8004.4676.1at 4455.248 kb on + strand, within Xcc-8004.4676.1at 4455.248 kb on + strand, within Xcc-8004.4676.1at 4455.249 kb on - strand, within Xcc-8004.4676.1at 4455.249 kb on - strand, within Xcc-8004.4676.1at 4455.249 kb on - strand, within Xcc-8004.4676.1at 4455.249 kb on - strand, within Xcc-8004.4676.1at 4455.249 kb on - strand, within Xcc-8004.4676.1at 4455.249 kb on - strand, within Xcc-8004.4676.1at 4455.249 kb on - strand, within Xcc-8004.4676.1at 4455.249 kb on - strand, within Xcc-8004.4676.1at 4455.249 kb on - strand, within Xcc-8004.4676.1at 4455.249 kb on - strand, within Xcc-8004.4676.1at 4455.321 kb on - strand, within Xcc-8004.4676.1at 4455.321 kb on - strand, within Xcc-8004.4676.1at 4455.321 kb on - strand, within Xcc-8004.4676.1at 4455.371 kb on + strand, within Xcc-8004.4676.1at 4455.372 kb on - strand, within Xcc-8004.4676.1at 4455.389 kb on + strand, within Xcc-8004.4676.1at 4455.389 kb on + strand, within Xcc-8004.4676.1at 4455.390 kb on - strand, within Xcc-8004.4676.1at 4455.390 kb on - strand, within Xcc-8004.4676.1at 4455.390 kb on - strand, within Xcc-8004.4676.1at 4455.390 kb on - strand, within Xcc-8004.4676.1at 4455.390 kb on - strand, within Xcc-8004.4676.1at 4455.390 kb on - strand, within Xcc-8004.4676.1at 4455.390 kb on - strand, within Xcc-8004.4676.1at 4455.466 kb on + strand, within Xcc-8004.4676.1at 4455.467 kb on - strand, within Xcc-8004.4676.1at 4455.467 kb on - strand, within Xcc-8004.4676.1at 4455.467 kb on - strand, within Xcc-8004.4676.1at 4455.467 kb on - strand, within Xcc-8004.4676.1at 4455.488 kb on + strand, within Xcc-8004.4676.1at 4455.519 kb on + strand, within Xcc-8004.4676.1at 4455.519 kb on + strand, within Xcc-8004.4676.1at 4455.520 kb on - strand, within Xcc-8004.4676.1at 4455.606 kb on - strandat 4455.614 kb on + strandat 4455.615 kb on - strandat 4455.618 kb on + strandat 4455.618 kb on + strandat 4455.618 kb on + strandat 4455.618 kb on + strandat 4455.688 kb on + strandat 4455.689 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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4,453,663 + Xcc-8004.4674.1 0.23 +2.4
4,453,664 - Xcc-8004.4674.1 0.23 +2.0
4,453,664 - Xcc-8004.4674.1 0.23 +0.8
4,453,687 + Xcc-8004.4674.1 0.25 -2.5
4,453,687 + Xcc-8004.4674.1 0.25 -0.5
4,453,687 + Xcc-8004.4674.1 0.25 +0.5
4,453,688 - Xcc-8004.4674.1 0.25 -0.5
4,453,688 - Xcc-8004.4674.1 0.25 +0.7
4,453,688 - Xcc-8004.4674.1 0.25 -0.9
4,453,692 - Xcc-8004.4674.1 0.25 +0.1
4,453,876 + Xcc-8004.4674.1 0.44 -1.0
4,453,876 + Xcc-8004.4674.1 0.44 -0.4
4,454,190 + Xcc-8004.4674.1 0.74 -1.5
4,454,190 + Xcc-8004.4674.1 0.74 +1.4
4,454,190 + Xcc-8004.4674.1 0.74 -0.9
4,454,279 - Xcc-8004.4674.1 0.83 +0.1
4,454,296 + Xcc-8004.4674.1 0.85 -1.1
4,454,297 - Xcc-8004.4674.1 0.85 -0.8
4,454,384 - -2.3
4,454,384 - +0.5
4,454,385 + -0.2
4,454,438 - +0.2
4,454,513 - -0.6
4,454,513 - -0.5
4,454,513 - +1.8
4,454,565 + Xcc-8004.4675.1 0.17 +0.1
4,454,565 + Xcc-8004.4675.1 0.17 -2.6
4,454,719 + -1.5
4,454,720 - -2.1
4,454,720 - -2.9
4,454,802 + -3.3
4,454,803 - +1.7
4,455,110 + Xcc-8004.4676.1 0.37 -1.8
4,455,110 + Xcc-8004.4676.1 0.37 -0.7
4,455,248 + Xcc-8004.4676.1 0.55 +1.4
4,455,248 + Xcc-8004.4676.1 0.55 +1.1
4,455,248 + Xcc-8004.4676.1 0.55 +0.3
4,455,248 + Xcc-8004.4676.1 0.55 +1.1
4,455,248 + Xcc-8004.4676.1 0.55 -2.8
4,455,248 + Xcc-8004.4676.1 0.55 +3.1
4,455,248 + Xcc-8004.4676.1 0.55 +1.5
4,455,248 + Xcc-8004.4676.1 0.55 -0.7
4,455,248 + Xcc-8004.4676.1 0.55 +0.2
4,455,248 + Xcc-8004.4676.1 0.55 -2.6
4,455,249 - Xcc-8004.4676.1 0.55 +3.4
4,455,249 - Xcc-8004.4676.1 0.55 -0.5
4,455,249 - Xcc-8004.4676.1 0.55 -1.9
4,455,249 - Xcc-8004.4676.1 0.55 -0.9
4,455,249 - Xcc-8004.4676.1 0.55 -2.6
4,455,249 - Xcc-8004.4676.1 0.55 -1.1
4,455,249 - Xcc-8004.4676.1 0.55 +1.4
4,455,249 - Xcc-8004.4676.1 0.55 -0.7
4,455,249 - Xcc-8004.4676.1 0.55 -0.6
4,455,249 - Xcc-8004.4676.1 0.55 -1.5
4,455,321 - Xcc-8004.4676.1 0.64 -1.8
4,455,321 - Xcc-8004.4676.1 0.64 -0.5
4,455,321 - Xcc-8004.4676.1 0.64 +0.4
4,455,371 + Xcc-8004.4676.1 0.71 +1.7
4,455,372 - Xcc-8004.4676.1 0.71 +0.7
4,455,389 + Xcc-8004.4676.1 0.73 -2.1
4,455,389 + Xcc-8004.4676.1 0.73 +0.7
4,455,390 - Xcc-8004.4676.1 0.73 +0.8
4,455,390 - Xcc-8004.4676.1 0.73 -0.3
4,455,390 - Xcc-8004.4676.1 0.73 -2.1
4,455,390 - Xcc-8004.4676.1 0.73 +0.3
4,455,390 - Xcc-8004.4676.1 0.73 -2.6
4,455,390 - Xcc-8004.4676.1 0.73 +0.5
4,455,390 - Xcc-8004.4676.1 0.73 +2.4
4,455,466 + Xcc-8004.4676.1 0.83 +1.8
4,455,467 - Xcc-8004.4676.1 0.83 -1.1
4,455,467 - Xcc-8004.4676.1 0.83 -0.8
4,455,467 - Xcc-8004.4676.1 0.83 -1.6
4,455,467 - Xcc-8004.4676.1 0.83 -1.3
4,455,488 + Xcc-8004.4676.1 0.86 -1.8
4,455,519 + Xcc-8004.4676.1 0.89 -1.4
4,455,519 + Xcc-8004.4676.1 0.89 -0.9
4,455,520 - Xcc-8004.4676.1 0.90 -0.6
4,455,606 - -1.7
4,455,614 + -0.0
4,455,615 - +0.4
4,455,618 + -0.0
4,455,618 + +1.7
4,455,618 + -0.2
4,455,618 + -0.2
4,455,688 + +0.7
4,455,689 - -1.5

Or see this region's nucleotide sequence