Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4620.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.4618.1 and Xcc-8004.4619.1 are separated by 98 nucleotidesXcc-8004.4619.1 and Xcc-8004.4620.1 are separated by 152 nucleotidesXcc-8004.4620.1 and Xcc-8004.4621.1 overlap by 1 nucleotides Xcc-8004.4618.1: Xcc-8004.4618.1 - FIG01209774: hypothetical protein, at 4,403,558 to 4,404,052 Xcc-8004.4618.1 Xcc-8004.4619.1: Xcc-8004.4619.1 - FIG01212331: hypothetical protein, at 4,404,151 to 4,404,831 Xcc-8004.4619.1 Xcc-8004.4620.1: Xcc-8004.4620.1 - Alanine racemase (EC 5.1.1.1), at 4,404,984 to 4,406,066 Xcc-8004.4620.1 Xcc-8004.4621.1: Xcc-8004.4621.1 - D-amino acid dehydrogenase small subunit (EC 1.4.99.1), at 4,406,066 to 4,407,355 Xcc-8004.4621.1 Position (kb) 4404 4405 4406 4407Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4404.042 kb on + strandat 4404.042 kb on + strandat 4404.042 kb on + strandat 4404.042 kb on + strandat 4404.042 kb on + strandat 4404.042 kb on + strandat 4404.042 kb on + strandat 4404.042 kb on + strandat 4404.043 kb on - strandat 4404.043 kb on - strandat 4404.043 kb on - strandat 4404.133 kb on + strandat 4404.424 kb on + strand, within Xcc-8004.4619.1at 4404.424 kb on + strand, within Xcc-8004.4619.1at 4404.425 kb on - strand, within Xcc-8004.4619.1at 4404.481 kb on + strand, within Xcc-8004.4619.1at 4404.481 kb on + strand, within Xcc-8004.4619.1at 4404.481 kb on + strand, within Xcc-8004.4619.1at 4404.481 kb on + strand, within Xcc-8004.4619.1at 4404.481 kb on + strand, within Xcc-8004.4619.1at 4404.482 kb on - strand, within Xcc-8004.4619.1at 4404.482 kb on - strand, within Xcc-8004.4619.1at 4404.482 kb on - strand, within Xcc-8004.4619.1at 4404.482 kb on - strand, within Xcc-8004.4619.1at 4404.482 kb on - strand, within Xcc-8004.4619.1at 4404.482 kb on - strand, within Xcc-8004.4619.1at 4404.565 kb on + strand, within Xcc-8004.4619.1at 4404.565 kb on + strand, within Xcc-8004.4619.1at 4404.565 kb on + strand, within Xcc-8004.4619.1at 4404.566 kb on - strand, within Xcc-8004.4619.1at 4404.619 kb on + strand, within Xcc-8004.4619.1at 4404.619 kb on + strand, within Xcc-8004.4619.1at 4404.619 kb on + strand, within Xcc-8004.4619.1at 4404.619 kb on + strand, within Xcc-8004.4619.1at 4404.620 kb on - strand, within Xcc-8004.4619.1at 4404.620 kb on - strand, within Xcc-8004.4619.1at 4404.620 kb on - strand, within Xcc-8004.4619.1at 4404.620 kb on - strand, within Xcc-8004.4619.1at 4404.620 kb on - strand, within Xcc-8004.4619.1at 4404.620 kb on - strand, within Xcc-8004.4619.1at 4404.620 kb on - strand, within Xcc-8004.4619.1at 4404.643 kb on + strand, within Xcc-8004.4619.1at 4404.643 kb on + strand, within Xcc-8004.4619.1at 4404.643 kb on + strand, within Xcc-8004.4619.1at 4404.643 kb on + strand, within Xcc-8004.4619.1at 4404.644 kb on - strand, within Xcc-8004.4619.1at 4404.644 kb on - strand, within Xcc-8004.4619.1at 4404.644 kb on - strand, within Xcc-8004.4619.1at 4404.816 kb on + strandat 4404.817 kb on - strandat 4404.940 kb on + strandat 4404.940 kb on + strandat 4404.969 kb on + strandat 4404.970 kb on - strandat 4405.006 kb on + strandat 4405.007 kb on - strandat 4405.007 kb on - strandat 4405.007 kb on - strandat 4405.045 kb on + strandat 4405.045 kb on + strandat 4405.045 kb on + strandat 4405.045 kb on + strandat 4405.046 kb on - strandat 4405.046 kb on - strandat 4405.046 kb on - strandat 4405.046 kb on - strandat 4405.046 kb on - strandat 4405.241 kb on - strand, within Xcc-8004.4620.1at 4405.252 kb on + strand, within Xcc-8004.4620.1at 4405.252 kb on + strand, within Xcc-8004.4620.1at 4405.253 kb on - strand, within Xcc-8004.4620.1at 4405.309 kb on + strand, within Xcc-8004.4620.1at 4405.309 kb on + strand, within Xcc-8004.4620.1at 4405.426 kb on + strand, within Xcc-8004.4620.1at 4405.426 kb on + strand, within Xcc-8004.4620.1at 4405.427 kb on - strand, within Xcc-8004.4620.1at 4405.427 kb on - strand, within Xcc-8004.4620.1at 4405.427 kb on - strand, within Xcc-8004.4620.1at 4405.782 kb on + strand, within Xcc-8004.4620.1at 4405.782 kb on + strand, within Xcc-8004.4620.1at 4405.782 kb on + strand, within Xcc-8004.4620.1at 4405.782 kb on + strand, within Xcc-8004.4620.1at 4405.782 kb on + strand, within Xcc-8004.4620.1at 4405.782 kb on + strand, within Xcc-8004.4620.1at 4405.782 kb on + strand, within Xcc-8004.4620.1at 4405.782 kb on + strand, within Xcc-8004.4620.1at 4405.782 kb on + strand, within Xcc-8004.4620.1at 4405.782 kb on + strand, within Xcc-8004.4620.1at 4405.782 kb on + strand, within Xcc-8004.4620.1at 4405.782 kb on + strand, within Xcc-8004.4620.1at 4405.782 kb on + strand, within Xcc-8004.4620.1at 4405.782 kb on + strand, within Xcc-8004.4620.1at 4405.782 kb on + strand, within Xcc-8004.4620.1at 4405.782 kb on + strand, within Xcc-8004.4620.1at 4405.783 kb on - strand, within Xcc-8004.4620.1at 4405.783 kb on - strand, within Xcc-8004.4620.1at 4405.783 kb on - strand, within Xcc-8004.4620.1at 4405.783 kb on - strand, within Xcc-8004.4620.1at 4405.783 kb on - strand, within Xcc-8004.4620.1at 4405.783 kb on - strand, within Xcc-8004.4620.1at 4405.783 kb on - strand, within Xcc-8004.4620.1at 4405.783 kb on - strand, within Xcc-8004.4620.1at 4405.783 kb on - strand, within Xcc-8004.4620.1at 4405.783 kb on - strand, within Xcc-8004.4620.1at 4405.783 kb on - strand, within Xcc-8004.4620.1at 4405.783 kb on - strand, within Xcc-8004.4620.1at 4405.957 kb on + strand, within Xcc-8004.4620.1at 4405.957 kb on + strand, within Xcc-8004.4620.1at 4405.958 kb on - strandat 4405.958 kb on - strandat 4406.017 kb on + strandat 4406.017 kb on + strandat 4406.018 kb on - strandat 4406.018 kb on - strandat 4406.018 kb on - strandat 4406.018 kb on - strandat 4406.067 kb on + strandat 4406.067 kb on + strandat 4406.068 kb on - strandat 4406.068 kb on - strandat 4406.110 kb on - strandat 4406.244 kb on + strand, within Xcc-8004.4621.1at 4406.245 kb on - strand, within Xcc-8004.4621.1at 4406.463 kb on + strand, within Xcc-8004.4621.1at 4406.463 kb on + strand, within Xcc-8004.4621.1at 4406.463 kb on + strand, within Xcc-8004.4621.1at 4406.463 kb on + strand, within Xcc-8004.4621.1at 4406.463 kb on + strand, within Xcc-8004.4621.1at 4406.463 kb on + strand, within Xcc-8004.4621.1at 4406.463 kb on + strand, within Xcc-8004.4621.1at 4406.464 kb on - strand, within Xcc-8004.4621.1at 4406.464 kb on - strand, within Xcc-8004.4621.1at 4406.464 kb on - strand, within Xcc-8004.4621.1at 4406.464 kb on - strand, within Xcc-8004.4621.1at 4406.464 kb on - strand, within Xcc-8004.4621.1at 4406.464 kb on - strand, within Xcc-8004.4621.1at 4406.464 kb on - strand, within Xcc-8004.4621.1at 4406.529 kb on + strand, within Xcc-8004.4621.1at 4406.530 kb on - strand, within Xcc-8004.4621.1at 4406.530 kb on - strand, within Xcc-8004.4621.1at 4406.545 kb on - strand, within Xcc-8004.4621.1at 4406.545 kb on - strand, within Xcc-8004.4621.1at 4406.589 kb on + strand, within Xcc-8004.4621.1at 4406.589 kb on + strand, within Xcc-8004.4621.1at 4406.589 kb on + strand, within Xcc-8004.4621.1at 4406.589 kb on + strand, within Xcc-8004.4621.1at 4406.589 kb on + strand, within Xcc-8004.4621.1at 4406.589 kb on + strand, within Xcc-8004.4621.1at 4406.589 kb on + strand, within Xcc-8004.4621.1at 4406.590 kb on - strand, within Xcc-8004.4621.1at 4406.590 kb on - strand, within Xcc-8004.4621.1at 4406.590 kb on - strand, within Xcc-8004.4621.1at 4406.590 kb on - strand, within Xcc-8004.4621.1at 4406.610 kb on + strand, within Xcc-8004.4621.1at 4406.610 kb on + strand, within Xcc-8004.4621.1at 4406.610 kb on + strand, within Xcc-8004.4621.1at 4406.610 kb on + strand, within Xcc-8004.4621.1at 4406.610 kb on + strand, within Xcc-8004.4621.1at 4406.611 kb on - strand, within Xcc-8004.4621.1at 4406.611 kb on - strand, within Xcc-8004.4621.1at 4406.611 kb on - strand, within Xcc-8004.4621.1at 4406.611 kb on - strand, within Xcc-8004.4621.1at 4406.611 kb on - strand, within Xcc-8004.4621.1at 4406.611 kb on - strand, within Xcc-8004.4621.1at 4406.698 kb on - strand, within Xcc-8004.4621.1at 4406.832 kb on + strand, within Xcc-8004.4621.1at 4406.832 kb on + strand, within Xcc-8004.4621.1at 4406.832 kb on + strand, within Xcc-8004.4621.1at 4406.833 kb on - strand, within Xcc-8004.4621.1at 4406.833 kb on - strand, within Xcc-8004.4621.1at 4406.833 kb on - strand, within Xcc-8004.4621.1at 4406.865 kb on + strand, within Xcc-8004.4621.1at 4406.865 kb on + strand, within Xcc-8004.4621.1at 4406.866 kb on - strand, within Xcc-8004.4621.1at 4406.866 kb on - strand, within Xcc-8004.4621.1at 4406.866 kb on - strand, within Xcc-8004.4621.1at 4406.878 kb on - strand, within Xcc-8004.4621.1at 4406.878 kb on - strand, within Xcc-8004.4621.1at 4407.015 kb on + strand, within Xcc-8004.4621.1at 4407.015 kb on + strand, within Xcc-8004.4621.1at 4407.015 kb on + strand, within Xcc-8004.4621.1at 4407.016 kb on - strand, within Xcc-8004.4621.1at 4407.016 kb on - strand, within Xcc-8004.4621.1at 4407.016 kb on - strand, within Xcc-8004.4621.1at 4407.054 kb on + strand, within Xcc-8004.4621.1at 4407.054 kb on + strand, within Xcc-8004.4621.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
remove
4,404,042 + +0.6
4,404,042 + -2.0
4,404,042 + -0.5
4,404,042 + -0.0
4,404,042 + +1.5
4,404,042 + -1.6
4,404,042 + +1.2
4,404,042 + -1.4
4,404,043 - -2.5
4,404,043 - +1.0
4,404,043 - -0.9
4,404,133 + +0.1
4,404,424 + Xcc-8004.4619.1 0.40 -1.4
4,404,424 + Xcc-8004.4619.1 0.40 -0.6
4,404,425 - Xcc-8004.4619.1 0.40 -1.0
4,404,481 + Xcc-8004.4619.1 0.48 +1.0
4,404,481 + Xcc-8004.4619.1 0.48 -1.7
4,404,481 + Xcc-8004.4619.1 0.48 -0.2
4,404,481 + Xcc-8004.4619.1 0.48 -1.4
4,404,481 + Xcc-8004.4619.1 0.48 +0.0
4,404,482 - Xcc-8004.4619.1 0.49 -1.1
4,404,482 - Xcc-8004.4619.1 0.49 -1.8
4,404,482 - Xcc-8004.4619.1 0.49 +0.4
4,404,482 - Xcc-8004.4619.1 0.49 -1.4
4,404,482 - Xcc-8004.4619.1 0.49 -0.8
4,404,482 - Xcc-8004.4619.1 0.49 -1.3
4,404,565 + Xcc-8004.4619.1 0.61 +0.1
4,404,565 + Xcc-8004.4619.1 0.61 -2.0
4,404,565 + Xcc-8004.4619.1 0.61 -1.0
4,404,566 - Xcc-8004.4619.1 0.61 -2.7
4,404,619 + Xcc-8004.4619.1 0.69 -0.4
4,404,619 + Xcc-8004.4619.1 0.69 -2.3
4,404,619 + Xcc-8004.4619.1 0.69 -0.4
4,404,619 + Xcc-8004.4619.1 0.69 -0.8
4,404,620 - Xcc-8004.4619.1 0.69 +1.2
4,404,620 - Xcc-8004.4619.1 0.69 +0.9
4,404,620 - Xcc-8004.4619.1 0.69 +0.8
4,404,620 - Xcc-8004.4619.1 0.69 -1.4
4,404,620 - Xcc-8004.4619.1 0.69 -2.7
4,404,620 - Xcc-8004.4619.1 0.69 -1.0
4,404,620 - Xcc-8004.4619.1 0.69 +0.8
4,404,643 + Xcc-8004.4619.1 0.72 +0.2
4,404,643 + Xcc-8004.4619.1 0.72 -0.8
4,404,643 + Xcc-8004.4619.1 0.72 -1.2
4,404,643 + Xcc-8004.4619.1 0.72 -0.5
4,404,644 - Xcc-8004.4619.1 0.72 +0.1
4,404,644 - Xcc-8004.4619.1 0.72 -0.1
4,404,644 - Xcc-8004.4619.1 0.72 -1.7
4,404,816 + +0.3
4,404,817 - +0.5
4,404,940 + -1.4
4,404,940 + -2.1
4,404,969 + -1.0
4,404,970 - +0.4
4,405,006 + -0.9
4,405,007 - -0.1
4,405,007 - -0.5
4,405,007 - -1.4
4,405,045 + -3.6
4,405,045 + -1.9
4,405,045 + -3.0
4,405,045 + +1.4
4,405,046 - -0.9
4,405,046 - -1.6
4,405,046 - -2.7
4,405,046 - -2.0
4,405,046 - -2.1
4,405,241 - Xcc-8004.4620.1 0.24 -1.1
4,405,252 + Xcc-8004.4620.1 0.25 -0.2
4,405,252 + Xcc-8004.4620.1 0.25 -1.8
4,405,253 - Xcc-8004.4620.1 0.25 +0.1
4,405,309 + Xcc-8004.4620.1 0.30 -1.5
4,405,309 + Xcc-8004.4620.1 0.30 -1.8
4,405,426 + Xcc-8004.4620.1 0.41 -1.6
4,405,426 + Xcc-8004.4620.1 0.41 +0.4
4,405,427 - Xcc-8004.4620.1 0.41 -3.1
4,405,427 - Xcc-8004.4620.1 0.41 -1.8
4,405,427 - Xcc-8004.4620.1 0.41 -0.7
4,405,782 + Xcc-8004.4620.1 0.74 -3.4
4,405,782 + Xcc-8004.4620.1 0.74 -1.4
4,405,782 + Xcc-8004.4620.1 0.74 -2.5
4,405,782 + Xcc-8004.4620.1 0.74 -2.3
4,405,782 + Xcc-8004.4620.1 0.74 -2.5
4,405,782 + Xcc-8004.4620.1 0.74 -3.7
4,405,782 + Xcc-8004.4620.1 0.74 -2.0
4,405,782 + Xcc-8004.4620.1 0.74 -1.2
4,405,782 + Xcc-8004.4620.1 0.74 -1.7
4,405,782 + Xcc-8004.4620.1 0.74 -0.2
4,405,782 + Xcc-8004.4620.1 0.74 -2.6
4,405,782 + Xcc-8004.4620.1 0.74 -1.5
4,405,782 + Xcc-8004.4620.1 0.74 -3.6
4,405,782 + Xcc-8004.4620.1 0.74 +0.8
4,405,782 + Xcc-8004.4620.1 0.74 -2.4
4,405,782 + Xcc-8004.4620.1 0.74 +0.4
4,405,783 - Xcc-8004.4620.1 0.74 -2.2
4,405,783 - Xcc-8004.4620.1 0.74 -2.5
4,405,783 - Xcc-8004.4620.1 0.74 -1.3
4,405,783 - Xcc-8004.4620.1 0.74 -1.9
4,405,783 - Xcc-8004.4620.1 0.74 -1.3
4,405,783 - Xcc-8004.4620.1 0.74 -2.6
4,405,783 - Xcc-8004.4620.1 0.74 -2.6
4,405,783 - Xcc-8004.4620.1 0.74 -1.6
4,405,783 - Xcc-8004.4620.1 0.74 -2.7
4,405,783 - Xcc-8004.4620.1 0.74 -0.9
4,405,783 - Xcc-8004.4620.1 0.74 +0.1
4,405,783 - Xcc-8004.4620.1 0.74 +1.4
4,405,957 + Xcc-8004.4620.1 0.90 -2.5
4,405,957 + Xcc-8004.4620.1 0.90 -1.4
4,405,958 - -1.4
4,405,958 - -2.1
4,406,017 + -2.2
4,406,017 + -1.8
4,406,018 - +0.4
4,406,018 - +0.1
4,406,018 - -2.5
4,406,018 - +0.4
4,406,067 + -0.4
4,406,067 + -0.6
4,406,068 - -1.7
4,406,068 - -2.6
4,406,110 - -1.2
4,406,244 + Xcc-8004.4621.1 0.14 -2.2
4,406,245 - Xcc-8004.4621.1 0.14 +4.7
4,406,463 + Xcc-8004.4621.1 0.31 +1.2
4,406,463 + Xcc-8004.4621.1 0.31 -0.6
4,406,463 + Xcc-8004.4621.1 0.31 -1.4
4,406,463 + Xcc-8004.4621.1 0.31 -2.3
4,406,463 + Xcc-8004.4621.1 0.31 -1.2
4,406,463 + Xcc-8004.4621.1 0.31 -0.3
4,406,463 + Xcc-8004.4621.1 0.31 +0.5
4,406,464 - Xcc-8004.4621.1 0.31 +0.6
4,406,464 - Xcc-8004.4621.1 0.31 +1.4
4,406,464 - Xcc-8004.4621.1 0.31 -1.3
4,406,464 - Xcc-8004.4621.1 0.31 +0.3
4,406,464 - Xcc-8004.4621.1 0.31 +1.4
4,406,464 - Xcc-8004.4621.1 0.31 +0.8
4,406,464 - Xcc-8004.4621.1 0.31 +0.9
4,406,529 + Xcc-8004.4621.1 0.36 -1.3
4,406,530 - Xcc-8004.4621.1 0.36 +0.6
4,406,530 - Xcc-8004.4621.1 0.36 -0.8
4,406,545 - Xcc-8004.4621.1 0.37 -2.2
4,406,545 - Xcc-8004.4621.1 0.37 -2.6
4,406,589 + Xcc-8004.4621.1 0.41 +2.4
4,406,589 + Xcc-8004.4621.1 0.41 +0.1
4,406,589 + Xcc-8004.4621.1 0.41 -0.1
4,406,589 + Xcc-8004.4621.1 0.41 -0.5
4,406,589 + Xcc-8004.4621.1 0.41 +2.4
4,406,589 + Xcc-8004.4621.1 0.41 +0.9
4,406,589 + Xcc-8004.4621.1 0.41 +2.4
4,406,590 - Xcc-8004.4621.1 0.41 +2.4
4,406,590 - Xcc-8004.4621.1 0.41 +1.1
4,406,590 - Xcc-8004.4621.1 0.41 -0.5
4,406,590 - Xcc-8004.4621.1 0.41 +0.1
4,406,610 + Xcc-8004.4621.1 0.42 -1.1
4,406,610 + Xcc-8004.4621.1 0.42 -2.1
4,406,610 + Xcc-8004.4621.1 0.42 -0.2
4,406,610 + Xcc-8004.4621.1 0.42 +0.4
4,406,610 + Xcc-8004.4621.1 0.42 +0.1
4,406,611 - Xcc-8004.4621.1 0.42 -0.2
4,406,611 - Xcc-8004.4621.1 0.42 +0.8
4,406,611 - Xcc-8004.4621.1 0.42 +0.4
4,406,611 - Xcc-8004.4621.1 0.42 -0.5
4,406,611 - Xcc-8004.4621.1 0.42 -0.8
4,406,611 - Xcc-8004.4621.1 0.42 -1.1
4,406,698 - Xcc-8004.4621.1 0.49 -0.2
4,406,832 + Xcc-8004.4621.1 0.59 +1.0
4,406,832 + Xcc-8004.4621.1 0.59 -0.4
4,406,832 + Xcc-8004.4621.1 0.59 +1.8
4,406,833 - Xcc-8004.4621.1 0.59 +1.2
4,406,833 - Xcc-8004.4621.1 0.59 -1.5
4,406,833 - Xcc-8004.4621.1 0.59 -1.8
4,406,865 + Xcc-8004.4621.1 0.62 -1.0
4,406,865 + Xcc-8004.4621.1 0.62 -2.4
4,406,866 - Xcc-8004.4621.1 0.62 +0.0
4,406,866 - Xcc-8004.4621.1 0.62 -0.2
4,406,866 - Xcc-8004.4621.1 0.62 -0.6
4,406,878 - Xcc-8004.4621.1 0.63 +1.3
4,406,878 - Xcc-8004.4621.1 0.63 +0.8
4,407,015 + Xcc-8004.4621.1 0.74 -2.2
4,407,015 + Xcc-8004.4621.1 0.74 -1.9
4,407,015 + Xcc-8004.4621.1 0.74 -2.9
4,407,016 - Xcc-8004.4621.1 0.74 -0.2
4,407,016 - Xcc-8004.4621.1 0.74 +1.4
4,407,016 - Xcc-8004.4621.1 0.74 +0.1
4,407,054 + Xcc-8004.4621.1 0.77 -1.9
4,407,054 + Xcc-8004.4621.1 0.77 -0.5

Or see this region's nucleotide sequence