Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.455.1 and Xcc-8004.456.1 are separated by 81 nucleotides Xcc-8004.456.1 and Xcc-8004.458.1 are separated by 491 nucleotides Xcc-8004.458.1 and Xcc-8004.459.1 are separated by 24 nucleotides
Xcc-8004.455.1: Xcc-8004.455.1 - Putative inner membrane protein, at 418,002 to 418,898
Xcc-8004.455.1
Xcc-8004.456.1: Xcc-8004.456.1 - carbonic anhydrase, family 3, at 418,980 to 419,540
Xcc-8004.456.1
Xcc-8004.458.1: Xcc-8004.458.1 - hypothetical protein, at 420,032 to 420,388
Xcc-8004.458.1
Xcc-8004.459.1: Xcc-8004.459.1 - 4-hydroxybenzoate transporter, at 420,413 to 421,723
Xcc-8004.459.1
Position (kb) 418
419
420 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 418.171 kb on + strand, within Xcc-8004.455.1 at 418.171 kb on + strand, within Xcc-8004.455.1 at 418.171 kb on + strand, within Xcc-8004.455.1 at 418.171 kb on + strand, within Xcc-8004.455.1 at 418.171 kb on + strand, within Xcc-8004.455.1 at 418.172 kb on - strand, within Xcc-8004.455.1 at 418.172 kb on - strand, within Xcc-8004.455.1 at 418.172 kb on - strand, within Xcc-8004.455.1 at 418.172 kb on - strand, within Xcc-8004.455.1 at 418.313 kb on - strand, within Xcc-8004.455.1 at 418.342 kb on + strand, within Xcc-8004.455.1 at 418.394 kb on - strand, within Xcc-8004.455.1 at 418.459 kb on + strand, within Xcc-8004.455.1 at 418.460 kb on - strand, within Xcc-8004.455.1 at 418.529 kb on - strand, within Xcc-8004.455.1 at 418.561 kb on + strand, within Xcc-8004.455.1 at 418.561 kb on + strand, within Xcc-8004.455.1 at 418.561 kb on + strand, within Xcc-8004.455.1 at 418.561 kb on + strand, within Xcc-8004.455.1 at 418.561 kb on + strand, within Xcc-8004.455.1 at 418.562 kb on - strand, within Xcc-8004.455.1 at 418.562 kb on - strand, within Xcc-8004.455.1 at 418.562 kb on - strand, within Xcc-8004.455.1 at 418.562 kb on - strand, within Xcc-8004.455.1 at 418.574 kb on + strand, within Xcc-8004.455.1 at 418.576 kb on + strand, within Xcc-8004.455.1 at 418.576 kb on + strand, within Xcc-8004.455.1 at 418.576 kb on + strand, within Xcc-8004.455.1 at 418.576 kb on + strand, within Xcc-8004.455.1 at 418.577 kb on - strand, within Xcc-8004.455.1 at 418.577 kb on - strand, within Xcc-8004.455.1 at 418.711 kb on + strand, within Xcc-8004.455.1 at 418.712 kb on - strand, within Xcc-8004.455.1 at 419.026 kb on + strand at 419.026 kb on + strand at 419.027 kb on - strand at 419.027 kb on - strand at 419.041 kb on + strand, within Xcc-8004.456.1 at 419.041 kb on + strand, within Xcc-8004.456.1 at 419.042 kb on - strand, within Xcc-8004.456.1 at 419.544 kb on - strand at 419.577 kb on + strand at 419.577 kb on + strand at 419.578 kb on - strand at 419.694 kb on + strand at 419.728 kb on - strand at 419.833 kb on - strand at 419.889 kb on + strand at 419.910 kb on + strand at 419.911 kb on - strand at 419.911 kb on - strand at 419.911 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 418,171 + Xcc-8004.455.1 0.19 +0.6 418,171 + Xcc-8004.455.1 0.19 -1.4 418,171 + Xcc-8004.455.1 0.19 -0.9 418,171 + Xcc-8004.455.1 0.19 +0.5 418,171 + Xcc-8004.455.1 0.19 +0.9 418,172 - Xcc-8004.455.1 0.19 +3.2 418,172 - Xcc-8004.455.1 0.19 -0.2 418,172 - Xcc-8004.455.1 0.19 -1.6 418,172 - Xcc-8004.455.1 0.19 -0.6 418,313 - Xcc-8004.455.1 0.35 -2.1 418,342 + Xcc-8004.455.1 0.38 +0.0 418,394 - Xcc-8004.455.1 0.44 -0.8 418,459 + Xcc-8004.455.1 0.51 -2.1 418,460 - Xcc-8004.455.1 0.51 +1.6 418,529 - Xcc-8004.455.1 0.59 +0.2 418,561 + Xcc-8004.455.1 0.62 +0.3 418,561 + Xcc-8004.455.1 0.62 +0.1 418,561 + Xcc-8004.455.1 0.62 -0.8 418,561 + Xcc-8004.455.1 0.62 -0.6 418,561 + Xcc-8004.455.1 0.62 +1.6 418,562 - Xcc-8004.455.1 0.62 +1.6 418,562 - Xcc-8004.455.1 0.62 +1.2 418,562 - Xcc-8004.455.1 0.62 -0.6 418,562 - Xcc-8004.455.1 0.62 +0.7 418,574 + Xcc-8004.455.1 0.64 +0.9 418,576 + Xcc-8004.455.1 0.64 -1.1 418,576 + Xcc-8004.455.1 0.64 -1.4 418,576 + Xcc-8004.455.1 0.64 +1.8 418,576 + Xcc-8004.455.1 0.64 -0.0 418,577 - Xcc-8004.455.1 0.64 -0.2 418,577 - Xcc-8004.455.1 0.64 +1.6 418,711 + Xcc-8004.455.1 0.79 +1.0 418,712 - Xcc-8004.455.1 0.79 +1.4 419,026 + +0.3 419,026 + -0.6 419,027 - -2.9 419,027 - -1.1 419,041 + Xcc-8004.456.1 0.11 +0.1 419,041 + Xcc-8004.456.1 0.11 -2.3 419,042 - Xcc-8004.456.1 0.11 -0.9 419,544 - +0.2 419,577 + -3.3 419,577 + -0.4 419,578 - -0.4 419,694 + +1.5 419,728 - +1.7 419,833 - -3.0 419,889 + +0.8 419,910 + +0.5 419,911 - +0.1 419,911 - +1.1 419,911 - +0.8
Or see this region's nucleotide sequence