Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4528.1 and Xcc-8004.4529.1 are separated by 189 nucleotides Xcc-8004.4529.1 and Xcc-8004.4530.1 are separated by 153 nucleotides Xcc-8004.4530.1 and Xcc-8004.4532.1 are separated by 271 nucleotides Xcc-8004.4532.1 and Xcc-8004.4533.1 overlap by 4 nucleotides
Xcc-8004.4528.1: Xcc-8004.4528.1 - hypothetical protein, at 4,327,310 to 4,327,663
Xcc-8004.4528.1
Xcc-8004.4529.1: Xcc-8004.4529.1 - FIG01210979: hypothetical protein, at 4,327,853 to 4,328,188
Xcc-8004.4529.1
Xcc-8004.4530.1: Xcc-8004.4530.1 - Dethiobiotin synthetase (EC 6.3.3.3), at 4,328,342 to 4,329,016
Xcc-8004.4530.1
Xcc-8004.4532.1: Xcc-8004.4532.1 - Free methionine-(R)-sulfoxide reductase, contains GAF domain, at 4,329,288 to 4,329,770
Xcc-8004.4532.1
Xcc-8004.4533.1: Xcc-8004.4533.1 - TfoX C-terminal domain superfamily, at 4,329,767 to 4,330,159
Xcc-8004.4533.1
Position (kb) 4328
4329
4330 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 4327.375 kb on + strand, within Xcc-8004.4528.1 at 4327.375 kb on + strand, within Xcc-8004.4528.1 at 4327.375 kb on + strand, within Xcc-8004.4528.1 at 4327.375 kb on + strand, within Xcc-8004.4528.1 at 4327.375 kb on + strand, within Xcc-8004.4528.1 at 4327.375 kb on + strand, within Xcc-8004.4528.1 at 4327.375 kb on + strand, within Xcc-8004.4528.1 at 4327.375 kb on + strand, within Xcc-8004.4528.1 at 4327.375 kb on + strand, within Xcc-8004.4528.1 at 4327.376 kb on - strand, within Xcc-8004.4528.1 at 4327.376 kb on - strand, within Xcc-8004.4528.1 at 4327.376 kb on - strand, within Xcc-8004.4528.1 at 4327.376 kb on - strand, within Xcc-8004.4528.1 at 4327.376 kb on - strand, within Xcc-8004.4528.1 at 4327.376 kb on - strand, within Xcc-8004.4528.1 at 4327.376 kb on - strand, within Xcc-8004.4528.1 at 4327.496 kb on + strand, within Xcc-8004.4528.1 at 4327.496 kb on + strand, within Xcc-8004.4528.1 at 4327.496 kb on + strand, within Xcc-8004.4528.1 at 4327.496 kb on + strand, within Xcc-8004.4528.1 at 4327.497 kb on - strand, within Xcc-8004.4528.1 at 4327.497 kb on - strand, within Xcc-8004.4528.1 at 4327.497 kb on - strand, within Xcc-8004.4528.1 at 4327.497 kb on - strand, within Xcc-8004.4528.1 at 4327.497 kb on - strand, within Xcc-8004.4528.1 at 4327.497 kb on - strand, within Xcc-8004.4528.1 at 4327.497 kb on - strand, within Xcc-8004.4528.1 at 4327.517 kb on + strand, within Xcc-8004.4528.1 at 4327.517 kb on + strand, within Xcc-8004.4528.1 at 4327.517 kb on + strand, within Xcc-8004.4528.1 at 4327.517 kb on + strand, within Xcc-8004.4528.1 at 4327.517 kb on + strand, within Xcc-8004.4528.1 at 4327.517 kb on + strand, within Xcc-8004.4528.1 at 4327.517 kb on + strand, within Xcc-8004.4528.1 at 4327.517 kb on + strand, within Xcc-8004.4528.1 at 4327.517 kb on + strand, within Xcc-8004.4528.1 at 4327.517 kb on + strand, within Xcc-8004.4528.1 at 4327.517 kb on + strand, within Xcc-8004.4528.1 at 4327.517 kb on + strand, within Xcc-8004.4528.1 at 4327.518 kb on - strand, within Xcc-8004.4528.1 at 4327.518 kb on - strand, within Xcc-8004.4528.1 at 4327.518 kb on - strand, within Xcc-8004.4528.1 at 4327.518 kb on - strand, within Xcc-8004.4528.1 at 4327.518 kb on - strand, within Xcc-8004.4528.1 at 4327.518 kb on - strand, within Xcc-8004.4528.1 at 4327.805 kb on + strand at 4328.003 kb on + strand, within Xcc-8004.4529.1 at 4328.003 kb on + strand, within Xcc-8004.4529.1 at 4328.186 kb on + strand at 4328.186 kb on + strand at 4328.186 kb on + strand at 4328.186 kb on + strand at 4328.186 kb on + strand at 4328.187 kb on - strand at 4328.275 kb on - strand at 4328.275 kb on - strand at 4328.790 kb on + strand, within Xcc-8004.4530.1 at 4328.791 kb on - strand, within Xcc-8004.4530.1 at 4328.791 kb on - strand, within Xcc-8004.4530.1 at 4328.791 kb on - strand, within Xcc-8004.4530.1 at 4328.808 kb on + strand, within Xcc-8004.4530.1 at 4328.808 kb on + strand, within Xcc-8004.4530.1 at 4328.809 kb on - strand, within Xcc-8004.4530.1 at 4328.809 kb on - strand, within Xcc-8004.4530.1 at 4328.997 kb on + strand at 4328.997 kb on + strand at 4328.997 kb on + strand at 4328.997 kb on + strand at 4328.997 kb on + strand at 4328.998 kb on - strand at 4328.998 kb on - strand at 4328.998 kb on - strand at 4328.998 kb on - strand at 4328.998 kb on - strand at 4328.998 kb on - strand at 4328.998 kb on - strand at 4328.998 kb on - strand at 4329.066 kb on + strand at 4329.066 kb on + strand at 4329.277 kb on - strand at 4329.330 kb on + strand at 4329.330 kb on + strand at 4329.330 kb on + strand at 4329.330 kb on + strand at 4329.330 kb on + strand at 4329.331 kb on - strand at 4329.331 kb on - strand at 4329.331 kb on - strand at 4329.331 kb on - strand at 4329.331 kb on - strand at 4329.331 kb on - strand at 4329.331 kb on - strand at 4329.331 kb on - strand at 4329.453 kb on + strand, within Xcc-8004.4532.1 at 4329.453 kb on + strand, within Xcc-8004.4532.1 at 4329.453 kb on + strand, within Xcc-8004.4532.1 at 4329.453 kb on + strand, within Xcc-8004.4532.1 at 4329.453 kb on + strand, within Xcc-8004.4532.1 at 4329.453 kb on + strand, within Xcc-8004.4532.1 at 4329.454 kb on - strand, within Xcc-8004.4532.1 at 4329.454 kb on - strand, within Xcc-8004.4532.1 at 4329.454 kb on - strand, within Xcc-8004.4532.1 at 4329.459 kb on + strand, within Xcc-8004.4532.1 at 4329.459 kb on + strand, within Xcc-8004.4532.1 at 4329.460 kb on - strand, within Xcc-8004.4532.1 at 4329.460 kb on - strand, within Xcc-8004.4532.1 at 4329.460 kb on - strand, within Xcc-8004.4532.1 at 4329.555 kb on - strand, within Xcc-8004.4532.1 at 4329.603 kb on - strand, within Xcc-8004.4532.1 at 4329.603 kb on - strand, within Xcc-8004.4532.1 at 4329.650 kb on - strand, within Xcc-8004.4532.1 at 4329.773 kb on - strand at 4329.879 kb on + strand, within Xcc-8004.4533.1 at 4329.879 kb on + strand, within Xcc-8004.4533.1 at 4329.880 kb on - strand, within Xcc-8004.4533.1 at 4329.923 kb on + strand, within Xcc-8004.4533.1 at 4329.924 kb on - strand, within Xcc-8004.4533.1 at 4329.924 kb on - strand, within Xcc-8004.4533.1 at 4329.924 kb on - strand, within Xcc-8004.4533.1 at 4330.001 kb on + strand, within Xcc-8004.4533.1 at 4330.002 kb on - strand, within Xcc-8004.4533.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 4,327,375 + Xcc-8004.4528.1 0.18 -0.1 4,327,375 + Xcc-8004.4528.1 0.18 +2.4 4,327,375 + Xcc-8004.4528.1 0.18 -0.3 4,327,375 + Xcc-8004.4528.1 0.18 +1.1 4,327,375 + Xcc-8004.4528.1 0.18 +1.4 4,327,375 + Xcc-8004.4528.1 0.18 +0.8 4,327,375 + Xcc-8004.4528.1 0.18 -0.3 4,327,375 + Xcc-8004.4528.1 0.18 +0.7 4,327,375 + Xcc-8004.4528.1 0.18 +1.2 4,327,376 - Xcc-8004.4528.1 0.19 +3.0 4,327,376 - Xcc-8004.4528.1 0.19 +0.3 4,327,376 - Xcc-8004.4528.1 0.19 -0.6 4,327,376 - Xcc-8004.4528.1 0.19 -0.4 4,327,376 - Xcc-8004.4528.1 0.19 +1.4 4,327,376 - Xcc-8004.4528.1 0.19 -0.8 4,327,376 - Xcc-8004.4528.1 0.19 +1.4 4,327,496 + Xcc-8004.4528.1 0.53 +1.6 4,327,496 + Xcc-8004.4528.1 0.53 -1.3 4,327,496 + Xcc-8004.4528.1 0.53 +1.7 4,327,496 + Xcc-8004.4528.1 0.53 +0.8 4,327,497 - Xcc-8004.4528.1 0.53 -0.3 4,327,497 - Xcc-8004.4528.1 0.53 -0.4 4,327,497 - Xcc-8004.4528.1 0.53 -0.3 4,327,497 - Xcc-8004.4528.1 0.53 -0.9 4,327,497 - Xcc-8004.4528.1 0.53 -1.2 4,327,497 - Xcc-8004.4528.1 0.53 -1.8 4,327,497 - Xcc-8004.4528.1 0.53 -2.1 4,327,517 + Xcc-8004.4528.1 0.58 +0.4 4,327,517 + Xcc-8004.4528.1 0.58 +0.2 4,327,517 + Xcc-8004.4528.1 0.58 -0.7 4,327,517 + Xcc-8004.4528.1 0.58 -0.9 4,327,517 + Xcc-8004.4528.1 0.58 -0.6 4,327,517 + Xcc-8004.4528.1 0.58 -1.4 4,327,517 + Xcc-8004.4528.1 0.58 -0.8 4,327,517 + Xcc-8004.4528.1 0.58 +0.3 4,327,517 + Xcc-8004.4528.1 0.58 -0.6 4,327,517 + Xcc-8004.4528.1 0.58 +0.4 4,327,517 + Xcc-8004.4528.1 0.58 +0.4 4,327,517 + Xcc-8004.4528.1 0.58 +0.8 4,327,518 - Xcc-8004.4528.1 0.59 +0.9 4,327,518 - Xcc-8004.4528.1 0.59 +0.8 4,327,518 - Xcc-8004.4528.1 0.59 +2.2 4,327,518 - Xcc-8004.4528.1 0.59 -0.6 4,327,518 - Xcc-8004.4528.1 0.59 -2.0 4,327,518 - Xcc-8004.4528.1 0.59 -1.6 4,327,805 + +0.9 4,328,003 + Xcc-8004.4529.1 0.45 -2.0 4,328,003 + Xcc-8004.4529.1 0.45 +1.6 4,328,186 + -0.0 4,328,186 + +0.5 4,328,186 + +0.7 4,328,186 + -1.4 4,328,186 + -1.7 4,328,187 - +0.5 4,328,275 - +0.4 4,328,275 - +0.8 4,328,790 + Xcc-8004.4530.1 0.66 -1.9 4,328,791 - Xcc-8004.4530.1 0.67 -2.3 4,328,791 - Xcc-8004.4530.1 0.67 -2.8 4,328,791 - Xcc-8004.4530.1 0.67 -0.8 4,328,808 + Xcc-8004.4530.1 0.69 -3.1 4,328,808 + Xcc-8004.4530.1 0.69 -2.1 4,328,809 - Xcc-8004.4530.1 0.69 -1.1 4,328,809 - Xcc-8004.4530.1 0.69 -1.9 4,328,997 + -0.7 4,328,997 + -0.7 4,328,997 + -1.1 4,328,997 + -1.0 4,328,997 + -2.4 4,328,998 - -0.0 4,328,998 - -0.9 4,328,998 - -0.9 4,328,998 - -1.4 4,328,998 - -0.3 4,328,998 - +1.3 4,328,998 - +2.1 4,328,998 - -0.5 4,329,066 + -1.9 4,329,066 + +1.0 4,329,277 - +5.9 4,329,330 + -1.0 4,329,330 + +0.1 4,329,330 + +1.3 4,329,330 + +0.6 4,329,330 + +0.4 4,329,331 - +1.9 4,329,331 - -0.6 4,329,331 - -0.1 4,329,331 - +2.5 4,329,331 - +1.4 4,329,331 - +2.9 4,329,331 - -0.4 4,329,331 - -0.7 4,329,453 + Xcc-8004.4532.1 0.34 -2.0 4,329,453 + Xcc-8004.4532.1 0.34 +2.4 4,329,453 + Xcc-8004.4532.1 0.34 -0.1 4,329,453 + Xcc-8004.4532.1 0.34 -1.3 4,329,453 + Xcc-8004.4532.1 0.34 -0.6 4,329,453 + Xcc-8004.4532.1 0.34 +0.8 4,329,454 - Xcc-8004.4532.1 0.34 -1.7 4,329,454 - Xcc-8004.4532.1 0.34 +3.2 4,329,454 - Xcc-8004.4532.1 0.34 -0.8 4,329,459 + Xcc-8004.4532.1 0.35 -1.8 4,329,459 + Xcc-8004.4532.1 0.35 +0.9 4,329,460 - Xcc-8004.4532.1 0.36 -0.7 4,329,460 - Xcc-8004.4532.1 0.36 -0.8 4,329,460 - Xcc-8004.4532.1 0.36 -0.2 4,329,555 - Xcc-8004.4532.1 0.55 +3.4 4,329,603 - Xcc-8004.4532.1 0.65 -0.9 4,329,603 - Xcc-8004.4532.1 0.65 +0.9 4,329,650 - Xcc-8004.4532.1 0.75 +1.3 4,329,773 - +0.1 4,329,879 + Xcc-8004.4533.1 0.28 +1.5 4,329,879 + Xcc-8004.4533.1 0.28 -1.9 4,329,880 - Xcc-8004.4533.1 0.29 -2.1 4,329,923 + Xcc-8004.4533.1 0.40 +0.4 4,329,924 - Xcc-8004.4533.1 0.40 -0.6 4,329,924 - Xcc-8004.4533.1 0.40 -1.2 4,329,924 - Xcc-8004.4533.1 0.40 -0.9 4,330,001 + Xcc-8004.4533.1 0.60 +1.5 4,330,002 - Xcc-8004.4533.1 0.60 +1.4
Or see this region's nucleotide sequence