Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4503.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4501.1 and Xcc-8004.4503.1 overlap by 17 nucleotidesXcc-8004.4503.1 and Xcc-8004.4505.1 are separated by 81 nucleotidesXcc-8004.4505.1 and Xcc-8004.4506.1 overlap by 1 nucleotides Xcc-8004.4501.1: Xcc-8004.4501.1 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 4,305,824 to 4,306,762 Xcc-8004.4501.1 Xcc-8004.4503.1: Xcc-8004.4503.1 - GDP-mannose 4,6-dehydratase (EC 4.2.1.47), at 4,306,746 to 4,307,780 Xcc-8004.4503.1 Xcc-8004.4505.1: Xcc-8004.4505.1 - membrane protein WxcE, at 4,307,862 to 4,308,497 Xcc-8004.4505.1 Xcc-8004.4506.1: Xcc-8004.4506.1 - membrane protein WxcD, at 4,308,497 to 4,310,263 Xcc-8004.4506.1 Position (kb) 4306 4307 4308Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4305.865 kb on + strandat 4305.865 kb on + strandat 4305.866 kb on - strandat 4306.237 kb on - strand, within Xcc-8004.4501.1at 4306.237 kb on - strand, within Xcc-8004.4501.1at 4306.293 kb on + strand, within Xcc-8004.4501.1at 4306.293 kb on + strand, within Xcc-8004.4501.1at 4306.293 kb on + strand, within Xcc-8004.4501.1at 4306.320 kb on + strand, within Xcc-8004.4501.1at 4306.380 kb on + strand, within Xcc-8004.4501.1at 4306.536 kb on + strand, within Xcc-8004.4501.1at 4306.536 kb on + strand, within Xcc-8004.4501.1at 4306.536 kb on + strand, within Xcc-8004.4501.1at 4306.536 kb on + strand, within Xcc-8004.4501.1at 4306.537 kb on - strand, within Xcc-8004.4501.1at 4306.591 kb on - strand, within Xcc-8004.4501.1at 4306.692 kb on + strandat 4306.692 kb on + strandat 4306.692 kb on + strandat 4306.692 kb on + strandat 4306.693 kb on - strandat 4306.693 kb on - strandat 4306.693 kb on - strandat 4306.693 kb on - strandat 4306.803 kb on + strandat 4306.804 kb on - strandat 4306.804 kb on - strandat 4306.842 kb on - strandat 4306.910 kb on + strand, within Xcc-8004.4503.1at 4306.910 kb on + strand, within Xcc-8004.4503.1at 4306.911 kb on - strand, within Xcc-8004.4503.1at 4307.101 kb on + strand, within Xcc-8004.4503.1at 4307.169 kb on + strand, within Xcc-8004.4503.1at 4307.169 kb on + strand, within Xcc-8004.4503.1at 4307.169 kb on + strand, within Xcc-8004.4503.1at 4307.169 kb on + strand, within Xcc-8004.4503.1at 4307.170 kb on - strand, within Xcc-8004.4503.1at 4307.423 kb on + strand, within Xcc-8004.4503.1at 4307.469 kb on + strand, within Xcc-8004.4503.1at 4307.469 kb on + strand, within Xcc-8004.4503.1at 4307.470 kb on - strand, within Xcc-8004.4503.1at 4307.470 kb on - strand, within Xcc-8004.4503.1at 4307.470 kb on - strand, within Xcc-8004.4503.1at 4307.471 kb on + strand, within Xcc-8004.4503.1at 4307.472 kb on - strand, within Xcc-8004.4503.1at 4307.573 kb on + strand, within Xcc-8004.4503.1at 4307.574 kb on - strand, within Xcc-8004.4503.1at 4307.574 kb on - strand, within Xcc-8004.4503.1at 4307.574 kb on - strand, within Xcc-8004.4503.1at 4307.605 kb on + strand, within Xcc-8004.4503.1at 4307.686 kb on + strandat 4307.686 kb on + strandat 4307.687 kb on - strandat 4307.801 kb on + strandat 4307.802 kb on - strandat 4307.808 kb on + strandat 4307.808 kb on + strandat 4307.808 kb on + strandat 4307.809 kb on - strandat 4307.941 kb on + strand, within Xcc-8004.4505.1at 4307.942 kb on - strand, within Xcc-8004.4505.1at 4308.015 kb on - strand, within Xcc-8004.4505.1at 4308.117 kb on + strand, within Xcc-8004.4505.1at 4308.136 kb on - strand, within Xcc-8004.4505.1at 4308.146 kb on + strand, within Xcc-8004.4505.1at 4308.167 kb on + strand, within Xcc-8004.4505.1at 4308.221 kb on + strand, within Xcc-8004.4505.1at 4308.236 kb on + strand, within Xcc-8004.4505.1at 4308.236 kb on + strand, within Xcc-8004.4505.1at 4308.237 kb on - strand, within Xcc-8004.4505.1at 4308.237 kb on - strand, within Xcc-8004.4505.1at 4308.366 kb on + strand, within Xcc-8004.4505.1at 4308.366 kb on + strand, within Xcc-8004.4505.1at 4308.366 kb on + strand, within Xcc-8004.4505.1at 4308.367 kb on - strand, within Xcc-8004.4505.1at 4308.398 kb on + strand, within Xcc-8004.4505.1at 4308.498 kb on + strandat 4308.498 kb on + strandat 4308.498 kb on + strandat 4308.518 kb on + strandat 4308.519 kb on - strandat 4308.629 kb on + strandat 4308.629 kb on + strandat 4308.630 kb on - strandat 4308.631 kb on + strandat 4308.631 kb on + strandat 4308.631 kb on + strandat 4308.631 kb on + strandat 4308.632 kb on - strandat 4308.632 kb on - strandat 4308.663 kb on - strandat 4308.733 kb on + strand, within Xcc-8004.4506.1at 4308.733 kb on + strand, within Xcc-8004.4506.1at 4308.733 kb on + strand, within Xcc-8004.4506.1at 4308.733 kb on + strand, within Xcc-8004.4506.1at 4308.733 kb on + strand, within Xcc-8004.4506.1at 4308.733 kb on + strand, within Xcc-8004.4506.1at 4308.734 kb on - strand, within Xcc-8004.4506.1at 4308.734 kb on - strand, within Xcc-8004.4506.1at 4308.734 kb on - strand, within Xcc-8004.4506.1at 4308.734 kb on - strand, within Xcc-8004.4506.1at 4308.735 kb on + strand, within Xcc-8004.4506.1at 4308.735 kb on + strand, within Xcc-8004.4506.1at 4308.735 kb on + strand, within Xcc-8004.4506.1at 4308.735 kb on + strand, within Xcc-8004.4506.1at 4308.735 kb on + strand, within Xcc-8004.4506.1at 4308.736 kb on - strand, within Xcc-8004.4506.1at 4308.736 kb on - strand, within Xcc-8004.4506.1at 4308.736 kb on - strand, within Xcc-8004.4506.1at 4308.736 kb on - strand, within Xcc-8004.4506.1at 4308.737 kb on + strand, within Xcc-8004.4506.1at 4308.737 kb on + strand, within Xcc-8004.4506.1at 4308.738 kb on - strand, within Xcc-8004.4506.1at 4308.738 kb on - strand, within Xcc-8004.4506.1at 4308.752 kb on + strand, within Xcc-8004.4506.1at 4308.752 kb on + strand, within Xcc-8004.4506.1at 4308.753 kb on - strand, within Xcc-8004.4506.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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4,305,865 + +1.8
4,305,865 + -0.8
4,305,866 - -0.6
4,306,237 - Xcc-8004.4501.1 0.44 +0.5
4,306,237 - Xcc-8004.4501.1 0.44 +1.4
4,306,293 + Xcc-8004.4501.1 0.50 -2.4
4,306,293 + Xcc-8004.4501.1 0.50 +2.1
4,306,293 + Xcc-8004.4501.1 0.50 +0.8
4,306,320 + Xcc-8004.4501.1 0.53 -0.5
4,306,380 + Xcc-8004.4501.1 0.59 +1.0
4,306,536 + Xcc-8004.4501.1 0.76 -0.4
4,306,536 + Xcc-8004.4501.1 0.76 -0.9
4,306,536 + Xcc-8004.4501.1 0.76 -0.6
4,306,536 + Xcc-8004.4501.1 0.76 -1.4
4,306,537 - Xcc-8004.4501.1 0.76 +0.4
4,306,591 - Xcc-8004.4501.1 0.82 -2.6
4,306,692 + +0.0
4,306,692 + -0.4
4,306,692 + +1.9
4,306,692 + +0.1
4,306,693 - -2.0
4,306,693 - +0.2
4,306,693 - +0.0
4,306,693 - -0.5
4,306,803 + +0.8
4,306,804 - +0.2
4,306,804 - -0.9
4,306,842 - +0.1
4,306,910 + Xcc-8004.4503.1 0.16 -0.9
4,306,910 + Xcc-8004.4503.1 0.16 -0.6
4,306,911 - Xcc-8004.4503.1 0.16 -1.3
4,307,101 + Xcc-8004.4503.1 0.34 -0.2
4,307,169 + Xcc-8004.4503.1 0.41 -0.4
4,307,169 + Xcc-8004.4503.1 0.41 +2.4
4,307,169 + Xcc-8004.4503.1 0.41 +1.4
4,307,169 + Xcc-8004.4503.1 0.41 +0.8
4,307,170 - Xcc-8004.4503.1 0.41 +0.4
4,307,423 + Xcc-8004.4503.1 0.65 +1.4
4,307,469 + Xcc-8004.4503.1 0.70 +2.4
4,307,469 + Xcc-8004.4503.1 0.70 -0.2
4,307,470 - Xcc-8004.4503.1 0.70 -2.5
4,307,470 - Xcc-8004.4503.1 0.70 +0.4
4,307,470 - Xcc-8004.4503.1 0.70 -0.8
4,307,471 + Xcc-8004.4503.1 0.70 -2.3
4,307,472 - Xcc-8004.4503.1 0.70 -0.8
4,307,573 + Xcc-8004.4503.1 0.80 +2.4
4,307,574 - Xcc-8004.4503.1 0.80 -0.3
4,307,574 - Xcc-8004.4503.1 0.80 -1.8
4,307,574 - Xcc-8004.4503.1 0.80 -0.4
4,307,605 + Xcc-8004.4503.1 0.83 +1.4
4,307,686 + -0.8
4,307,686 + -2.0
4,307,687 - -1.4
4,307,801 + -1.0
4,307,802 - +0.2
4,307,808 + +0.5
4,307,808 + +0.9
4,307,808 + -0.8
4,307,809 - +0.3
4,307,941 + Xcc-8004.4505.1 0.12 +1.6
4,307,942 - Xcc-8004.4505.1 0.13 -1.2
4,308,015 - Xcc-8004.4505.1 0.24 +1.4
4,308,117 + Xcc-8004.4505.1 0.40 -0.8
4,308,136 - Xcc-8004.4505.1 0.43 +1.5
4,308,146 + Xcc-8004.4505.1 0.45 +0.7
4,308,167 + Xcc-8004.4505.1 0.48 +2.9
4,308,221 + Xcc-8004.4505.1 0.56 -1.8
4,308,236 + Xcc-8004.4505.1 0.59 +0.6
4,308,236 + Xcc-8004.4505.1 0.59 -2.1
4,308,237 - Xcc-8004.4505.1 0.59 +2.0
4,308,237 - Xcc-8004.4505.1 0.59 +0.2
4,308,366 + Xcc-8004.4505.1 0.79 -2.5
4,308,366 + Xcc-8004.4505.1 0.79 +0.8
4,308,366 + Xcc-8004.4505.1 0.79 -2.2
4,308,367 - Xcc-8004.4505.1 0.79 -0.0
4,308,398 + Xcc-8004.4505.1 0.84 +1.2
4,308,498 + -1.0
4,308,498 + +0.1
4,308,498 + +1.4
4,308,518 + +2.1
4,308,519 - -0.3
4,308,629 + +0.6
4,308,629 + +2.8
4,308,630 - -3.1
4,308,631 + +1.6
4,308,631 + +0.6
4,308,631 + +1.5
4,308,631 + -0.9
4,308,632 - +1.7
4,308,632 - -0.6
4,308,663 - +0.2
4,308,733 + Xcc-8004.4506.1 0.13 +1.7
4,308,733 + Xcc-8004.4506.1 0.13 -0.3
4,308,733 + Xcc-8004.4506.1 0.13 +3.3
4,308,733 + Xcc-8004.4506.1 0.13 +0.1
4,308,733 + Xcc-8004.4506.1 0.13 -1.2
4,308,733 + Xcc-8004.4506.1 0.13 -1.7
4,308,734 - Xcc-8004.4506.1 0.13 +2.7
4,308,734 - Xcc-8004.4506.1 0.13 +0.8
4,308,734 - Xcc-8004.4506.1 0.13 -2.5
4,308,734 - Xcc-8004.4506.1 0.13 +0.3
4,308,735 + Xcc-8004.4506.1 0.13 +0.3
4,308,735 + Xcc-8004.4506.1 0.13 -1.2
4,308,735 + Xcc-8004.4506.1 0.13 +1.2
4,308,735 + Xcc-8004.4506.1 0.13 +0.4
4,308,735 + Xcc-8004.4506.1 0.13 -2.6
4,308,736 - Xcc-8004.4506.1 0.14 -1.4
4,308,736 - Xcc-8004.4506.1 0.14 -1.0
4,308,736 - Xcc-8004.4506.1 0.14 -1.4
4,308,736 - Xcc-8004.4506.1 0.14 -1.3
4,308,737 + Xcc-8004.4506.1 0.14 +2.6
4,308,737 + Xcc-8004.4506.1 0.14 +0.5
4,308,738 - Xcc-8004.4506.1 0.14 -2.1
4,308,738 - Xcc-8004.4506.1 0.14 +0.4
4,308,752 + Xcc-8004.4506.1 0.14 -0.6
4,308,752 + Xcc-8004.4506.1 0.14 +0.9
4,308,753 - Xcc-8004.4506.1 0.14 +0.4

Or see this region's nucleotide sequence